Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42908 * 109.47208 * 2 1 4 4 C 1.42897 * 113.99804 * 179.97438 * 3 2 1 5 5 C 1.53786 * 113.61258 * 150.00086 * 4 3 2 6 6 C 1.53779 * 87.08418 * 89.11662 * 5 4 3 7 7 C 1.50698 * 113.61695 * 139.98098 * 6 5 4 8 8 O 1.21284 * 119.99746 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99756 * 180.02562 * 7 6 5 10 10 C 1.47422 * 125.65440 * 359.97111 * 9 7 6 11 11 C 1.54904 * 104.83588 * 155.91779 * 10 9 7 12 12 C 1.55163 * 101.58089 * 37.01349 * 11 10 9 13 13 H 1.09002 * 110.71868 * 83.03475 * 12 11 10 14 14 N 1.46490 * 110.71993 * 206.13410 * 12 11 10 15 15 C 1.36935 * 120.00121 * 273.54103 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.47030 * 125.64654 * 180.02562 * 9 7 6 24 24 C 1.53781 * 113.61488 * 247.49387 * 4 3 2 25 25 H 1.09006 * 109.47519 * 300.00281 * 1 2 3 26 26 H 1.08999 * 109.47052 * 59.99827 * 1 2 3 27 27 H 1.08992 * 109.47574 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47679 * 239.99777 * 2 1 3 29 29 H 1.09003 * 109.46966 * 119.99664 * 2 1 3 30 30 H 1.09002 * 112.91351 * 18.74894 * 4 3 2 31 31 H 1.08998 * 113.61158 * 334.56161 * 5 4 3 32 32 H 1.09007 * 113.68979 * 203.67920 * 5 4 3 33 33 H 1.08998 * 113.61337 * 270.80286 * 6 5 4 34 34 H 1.09000 * 110.36241 * 37.08131 * 10 9 7 35 35 H 1.08998 * 110.46123 * 274.81125 * 10 9 7 36 36 H 1.08994 * 111.00996 * 278.93912 * 11 10 9 37 37 H 1.09000 * 111.03777 * 155.09902 * 11 10 9 38 38 H 0.97000 * 120.00577 * 93.54703 * 14 12 11 39 39 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 40 40 H 1.08999 * 109.88565 * 61.58837 * 23 9 7 41 41 H 1.08999 * 109.87582 * 300.42591 * 23 9 7 42 42 H 1.09000 * 113.61689 * 156.33919 * 24 4 3 43 43 H 1.09003 * 113.61367 * 25.43488 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.9489 2.7251 -0.7039 6 6 3.8391 3.4328 0.6569 7 6 4.9834 4.3705 0.9438 8 8 5.8742 4.5063 0.1320 9 7 5.0169 5.0581 2.1025 10 6 4.0048 4.9891 3.1721 11 6 4.7561 5.4174 4.4573 12 6 5.6985 6.5235 3.9132 13 1 5.1758 7.4778 3.8480 14 7 6.8933 6.6452 4.7520 15 6 6.8734 7.4506 5.8593 16 1 5.9767 7.9958 6.1144 17 6 8.0057 7.5664 6.6539 18 7 9.0987 6.9023 6.3427 19 14 7.9782 8.6646 8.1647 20 1 9.3018 8.6156 8.8364 21 1 7.6824 10.0613 7.7560 22 1 6.9290 8.1903 9.1024 23 6 6.0684 6.0021 2.5086 24 6 4.0018 2.0466 1.3025 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.9290 0.5458 -0.3218 31 1 3.2646 3.1170 -1.4564 32 1 4.9723 2.6355 -1.0682 33 1 2.8646 3.8873 0.8353 34 1 3.6292 3.9710 3.2738 35 1 3.1844 5.6764 2.9654 36 1 5.3272 4.5865 4.8713 37 1 4.0659 5.8217 5.1977 38 1 7.6986 6.1553 4.5231 39 1 9.1128 6.3318 5.5583 40 1 6.1127 6.8330 1.8045 41 1 7.0309 5.4919 2.5441 42 1 5.0398 1.7703 1.4875 43 1 3.3602 1.8908 2.1698 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968564407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = -67.873376 kcal Electronic energy + Delta-G solvation = -22283.821863 eV Core-core repulsion = 18943.211443 eV Total energy + Delta-G solvation = -3340.610420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66452 -40.03369 -38.70915 -36.82378 -36.26618 -33.35144 -31.79455 -30.97498 -29.62075 -27.05114 -26.76247 -25.37058 -24.12420 -23.69714 -21.90493 -21.23132 -20.01659 -19.53899 -18.58503 -17.45412 -17.31445 -16.86738 -16.64963 -16.49087 -16.01817 -15.66614 -15.42836 -14.90259 -14.51966 -14.16866 -14.05720 -13.94377 -13.58366 -13.42417 -13.35959 -13.24862 -12.76835 -12.65397 -12.48605 -12.44151 -12.40178 -12.22189 -11.88706 -11.83577 -11.62630 -11.44612 -11.30990 -10.94387 -10.83405 -10.42163 -9.77520 -9.17751 -8.40655 -5.36722 1.49088 1.59762 1.69887 1.85396 1.87867 2.58298 2.71938 3.31473 3.39555 3.47419 3.57734 3.60303 3.70408 3.79854 3.92736 4.13742 4.19622 4.23114 4.26703 4.29395 4.38893 4.41871 4.54612 4.56591 4.69751 4.72126 4.76870 4.85419 4.89549 4.94910 5.02109 5.07234 5.08546 5.14259 5.24706 5.31743 5.34040 5.59412 6.30360 6.45086 6.47324 7.02526 7.05269 7.92627 8.05666 9.10675 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033434 B = 0.002986 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.276196 B = 9374.137520 C = 9803.053301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.382 6.382 4 C 0.076 3.924 5 C -0.119 4.119 6 C -0.120 4.120 7 C 0.529 3.471 8 O -0.589 6.589 9 N -0.612 5.612 10 C 0.108 3.892 11 C -0.143 4.143 12 C 0.170 3.830 13 H 0.067 0.933 14 N -0.744 5.744 15 C -0.328 4.328 16 H 0.075 0.925 17 C -0.106 4.106 18 N -0.977 5.977 19 Si 1.130 2.870 20 H -0.297 1.297 21 H -0.277 1.277 22 H -0.273 1.273 23 C 0.109 3.891 24 C -0.136 4.136 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.358 0.642 39 H 0.242 0.758 40 H 0.060 0.940 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.702 -13.953 -11.716 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.301 6.301 4 C 0.018 3.982 5 C -0.157 4.157 6 C -0.141 4.141 7 C 0.320 3.680 8 O -0.470 6.470 9 N -0.345 5.345 10 C -0.014 4.014 11 C -0.184 4.184 12 C 0.060 3.940 13 H 0.085 0.915 14 N -0.385 5.385 15 C -0.459 4.459 16 H 0.093 0.907 17 C -0.297 4.297 18 N -0.625 5.625 19 Si 0.954 3.046 20 H -0.223 1.223 21 H -0.203 1.203 22 H -0.199 1.199 23 C -0.016 4.016 24 C -0.174 4.174 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.148 0.852 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.190 0.810 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.689 -13.062 -10.873 25.261 hybrid contribution 0.174 -0.658 -1.367 1.527 sum -18.515 -13.720 -12.240 26.094 Atomic orbital electron populations 1.21767 0.92973 1.03321 1.02722 1.22753 0.96214 0.82748 1.01054 1.87872 1.19560 1.28111 1.94557 1.22869 0.81764 0.98212 0.95337 1.23102 1.02269 0.94855 0.95430 1.22749 0.96868 0.94185 1.00248 1.20991 0.87833 0.79984 0.79231 1.90655 1.41424 1.67250 1.47707 1.48594 1.24782 1.42641 1.18440 1.22509 0.90645 1.03557 0.84688 1.23331 0.98901 0.99151 0.96992 1.21317 0.88104 0.96963 0.87569 0.91500 1.42567 1.11286 1.55313 1.29356 1.20370 1.00135 1.21960 1.03472 0.90724 1.27272 0.92062 1.03789 1.06565 1.71001 1.29718 1.32811 1.28949 0.82611 0.75526 0.74216 0.72257 1.22306 1.20327 1.19932 1.21961 0.91025 0.92152 0.96440 1.23372 1.02228 0.92577 0.99201 0.92270 0.92295 0.89325 0.92314 0.92431 0.88653 0.89762 0.88865 0.85170 0.88281 0.88956 0.92611 0.89293 0.80981 0.94727 0.92180 0.93873 0.89535 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16 2 C 0.05 0.57 6.50 71.98 0.47 1.03 16 3 O -0.38 -6.45 10.27 -148.98 -1.53 -7.98 16 4 C 0.08 1.25 4.37 31.12 0.14 1.38 16 5 C -0.12 -2.40 7.24 31.12 0.23 -2.17 16 6 C -0.12 -2.59 3.07 -11.01 -0.03 -2.62 16 7 C 0.53 16.33 7.37 87.66 0.65 16.97 16 8 O -0.59 -23.08 16.23 -3.04 -0.05 -23.13 16 9 N -0.61 -18.74 3.33 -811.81 -2.70 -21.44 16 10 C 0.11 2.58 6.66 86.85 0.58 3.16 16 11 C -0.14 -4.50 6.77 31.99 0.22 -4.28 16 12 C 0.17 6.60 3.59 46.18 0.17 6.77 16 13 H 0.07 2.58 8.12 -2.39 -0.02 2.56 16 14 N -0.74 -37.24 5.25 -317.34 -1.67 -38.91 16 15 C -0.33 -18.01 9.98 84.03 0.84 -17.18 16 16 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 17 C -0.11 -6.11 5.50 84.86 0.47 -5.64 16 18 N -0.98 -61.59 13.70 21.65 0.30 -61.30 16 19 Si 1.13 51.19 29.92 68.60 2.05 53.25 16 20 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 C 0.11 4.02 6.62 86.73 0.57 4.59 16 24 C -0.14 -2.44 7.04 31.12 0.22 -2.22 16 25 H 0.06 0.63 8.14 -2.38 -0.02 0.62 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 1.24 7.87 -2.39 -0.02 1.23 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 2.15 7.43 -2.38 -0.02 2.13 16 33 H 0.13 2.44 8.09 -2.39 -0.02 2.42 16 34 H 0.10 1.88 7.22 -2.39 -0.02 1.86 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.36 19.23 6.34 -92.71 -0.59 18.64 16 39 H 0.24 15.35 6.77 -92.71 -0.63 14.72 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.04 1.80 7.69 -2.39 -0.02 1.78 16 42 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 43 H 0.09 1.47 8.05 -2.39 -0.02 1.45 16 Total: -1.00 -72.08 349.92 2.18 -69.90 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: 0.54 Total: 30.55 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 5.24 Total: -0.93 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -4.07 Total: -121.65 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.58 Total: -31.11 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.25 kcal Total: -72.08 2.18 -69.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968564407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.023 kcal (2) G-P(sol) polarization free energy of solvation -72.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds