Wall clock time and date at job start Tue Mar 31 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00301 * 2 1 4 4 H 1.08999 * 109.46579 * 30.00042 * 3 2 1 5 5 C 1.53001 * 109.47136 * 270.00144 * 3 2 1 6 6 C 1.50699 * 109.47168 * 150.00063 * 3 2 1 7 7 O 1.21276 * 120.00236 * 5.00344 * 6 3 2 8 8 N 1.34776 * 119.99894 * 185.00427 * 6 3 2 9 9 C 1.47670 * 134.45503 * 180.02562 * 8 6 3 10 10 C 1.53445 * 85.97550 * 155.70814 * 9 8 6 11 11 C 1.47674 * 134.45181 * 359.97438 * 8 6 3 12 12 C 1.52633 * 113.71483 * 268.85605 * 10 9 8 13 13 C 1.53183 * 109.35298 * 171.27226 * 12 10 9 14 14 C 1.52669 * 109.42857 * 58.92887 * 13 12 10 15 15 N 1.46902 * 109.34308 * 303.76841 * 14 13 12 16 16 C 1.36944 * 120.68830 * 235.31177 * 15 14 13 17 17 H 1.08001 * 119.99828 * 151.86347 * 16 15 14 18 18 C 1.38803 * 119.99932 * 331.86393 * 16 15 14 19 19 N 1.31619 * 120.00435 * 335.05172 * 18 16 15 20 20 Si 1.86799 * 120.00223 * 155.05291 * 18 16 15 21 21 H 1.48500 * 109.47410 * 89.99697 * 20 18 16 22 22 H 1.48495 * 109.47627 * 209.99922 * 20 18 16 23 23 H 1.48507 * 109.46931 * 329.99818 * 20 18 16 24 24 C 1.47119 * 118.62047 * 55.03887 * 15 14 13 25 25 H 1.08999 * 109.47060 * 59.99851 * 1 2 3 26 26 H 1.09001 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46660 * 299.99826 * 1 2 3 28 28 H 1.08998 * 109.47318 * 300.00010 * 5 3 2 29 29 H 1.09007 * 109.47188 * 59.99622 * 5 3 2 30 30 H 1.08999 * 109.46767 * 179.97438 * 5 3 2 31 31 H 1.09001 * 113.78847 * 41.44829 * 9 8 6 32 32 H 1.09000 * 113.90159 * 269.98839 * 9 8 6 33 33 H 1.09000 * 113.79087 * 90.02906 * 11 8 6 34 34 H 1.09000 * 113.79445 * 318.55302 * 11 8 6 35 35 H 1.09008 * 109.48858 * 291.23484 * 12 10 9 36 36 H 1.08998 * 109.49590 * 51.30343 * 12 10 9 37 37 H 1.08999 * 109.49054 * 179.01805 * 13 12 10 38 38 H 1.08997 * 109.49040 * 299.09174 * 13 12 10 39 39 H 1.08998 * 109.44336 * 183.78885 * 14 13 12 40 40 H 1.08998 * 109.37503 * 63.70665 * 14 13 12 41 41 H 0.97001 * 119.99673 * 354.26202 * 19 18 16 42 42 H 1.09000 * 109.63362 * 68.58036 * 24 15 14 43 43 H 1.09001 * 109.63332 * 189.19041 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7898 0.2045 1.0913 8 7 4.0255 2.4039 0.9224 9 6 5.3155 2.7303 1.5627 10 6 5.3145 3.9837 0.6774 11 6 3.7899 3.8271 0.6067 12 6 6.0132 3.7873 -0.6653 13 6 5.7674 5.0138 -1.5495 14 6 6.3012 6.2605 -0.8484 15 7 5.6722 6.3822 0.4735 16 6 5.0070 7.5254 0.8284 17 1 4.1975 7.4797 1.5419 18 6 5.3730 8.7428 0.2711 19 7 6.5959 8.9176 -0.1833 20 14 4.1301 10.1333 0.1658 21 1 4.2039 10.9577 1.3987 22 1 4.4340 10.9807 -1.0152 23 1 2.7640 9.5669 0.0302 24 6 5.7667 5.2482 1.4060 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.8829 1.0775 -1.9564 29 1 1.2569 1.8014 -1.9564 30 1 2.6607 2.7673 -1.4424 31 1 6.1138 2.0264 1.3273 32 1 5.2378 2.9447 2.6286 33 1 3.2556 4.3682 1.3876 34 1 3.3765 3.9943 -0.3880 35 1 7.0842 3.6644 -0.5035 36 1 5.6150 2.8993 -1.1562 37 1 6.2800 4.8836 -2.5027 38 1 4.6976 5.1278 -1.7241 39 1 6.0667 7.1413 -1.4461 40 1 7.3815 6.1750 -0.7315 41 1 7.2645 8.2268 -0.0541 42 1 6.7986 5.1311 1.7370 43 1 5.1210 5.4264 2.2659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981653018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:44 Heat of formation + Delta-G solvation = -24.939109 kcal Electronic energy + Delta-G solvation = -23542.930565 eV Core-core repulsion = 20204.181915 eV Total energy + Delta-G solvation = -3338.748651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76723 -38.96638 -37.33979 -36.03088 -32.93682 -32.03237 -30.65681 -29.61739 -27.02197 -26.16499 -26.12213 -25.25019 -23.49517 -22.38909 -20.75479 -19.26471 -18.00920 -17.40875 -17.23670 -16.80611 -15.97807 -15.47416 -15.35620 -14.57052 -14.24989 -14.10557 -13.95490 -13.66751 -13.44146 -13.18344 -12.96538 -12.74582 -12.64510 -12.35675 -12.04194 -11.89230 -11.80248 -11.40037 -11.30613 -11.04888 -10.75410 -10.48178 -10.29951 -10.13114 -10.06841 -10.05009 -9.84860 -9.43633 -9.30411 -8.58049 -8.40611 -6.93597 -6.12508 -3.29698 2.61318 2.67874 3.45616 3.48938 3.63939 3.71462 4.34151 4.47270 4.62055 4.72422 4.82593 5.00512 5.07232 5.12794 5.15689 5.25365 5.32211 5.42426 5.43629 5.45241 5.54996 5.58464 5.67534 5.71000 5.73979 5.87379 5.91410 6.00852 6.12427 6.25913 6.37513 6.42720 6.54079 6.61770 6.67175 6.86027 7.02158 7.15356 7.77616 7.93024 8.22641 8.51883 9.04589 9.78102 10.22738 11.16038 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.004485 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.841621 B = 6241.988453 C = 6739.139709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.076 3.924 4 H 0.084 0.916 5 C -0.172 4.172 6 C 0.535 3.465 7 O -0.532 6.532 8 N -0.640 5.640 9 C 0.117 3.883 10 C -0.101 4.101 11 C 0.117 3.883 12 C -0.084 4.084 13 C -0.136 4.136 14 C 0.148 3.852 15 N -0.596 5.596 16 C -0.350 4.350 17 H 0.056 0.944 18 C -0.022 4.022 19 N -0.915 5.915 20 Si 1.064 2.936 21 H -0.294 1.294 22 H -0.286 1.286 23 H -0.293 1.293 24 C 0.163 3.837 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.016 0.984 41 H 0.270 0.730 42 H 0.023 0.977 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.545 -11.516 -1.338 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.014 3.986 4 H 0.102 0.898 5 C -0.229 4.229 6 C 0.323 3.677 7 O -0.408 6.408 8 N -0.377 5.377 9 C -0.005 4.005 10 C -0.104 4.104 11 C -0.005 4.005 12 C -0.121 4.121 13 C -0.175 4.175 14 C 0.022 3.978 15 N -0.319 5.319 16 C -0.479 4.479 17 H 0.074 0.926 18 C -0.224 4.224 19 N -0.554 5.554 20 Si 0.894 3.106 21 H -0.222 1.222 22 H -0.212 1.212 23 H -0.219 1.219 24 C 0.036 3.964 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.034 0.966 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.578 -10.873 -1.726 13.956 hybrid contribution -0.102 -1.335 0.675 1.499 sum -8.679 -12.208 -1.051 15.015 Atomic orbital electron populations 1.22870 0.80755 1.03079 1.00066 1.88032 1.19550 1.25448 1.94968 1.21846 0.93400 0.86391 0.96934 0.89836 1.22277 1.03269 1.02621 0.94780 1.19996 0.85384 0.82808 0.79515 1.90692 1.69177 1.29253 1.51687 1.50111 1.22800 1.06409 1.58366 1.23232 0.84741 0.94882 0.97694 1.22574 0.94819 0.95978 0.97003 1.23368 0.97630 0.77960 1.01574 1.21124 0.99583 0.97858 0.93581 1.21991 1.01304 0.96580 0.97598 1.20844 0.94095 0.95856 0.86968 1.44096 1.64581 1.13262 1.09960 1.19931 1.12493 0.86008 1.29510 0.92639 1.25803 0.99133 0.98058 0.99421 1.70751 1.01308 1.35783 1.47594 0.83560 0.74777 0.75675 0.76624 1.22182 1.21199 1.21912 1.20780 0.97856 0.85679 0.92047 0.93812 0.89224 0.93888 0.91189 0.91336 0.90356 0.90329 0.89705 0.89389 0.89938 0.92008 0.92998 0.92829 0.92407 0.90159 0.96600 0.91902 0.95921 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.36 16 2 O -0.36 -5.01 9.89 -55.09 -0.54 -5.55 16 3 C 0.08 0.97 2.92 -27.88 -0.08 0.89 16 4 H 0.08 0.91 7.79 -51.93 -0.40 0.51 16 5 C -0.17 -1.89 9.44 37.16 0.35 -1.54 16 6 C 0.53 8.60 7.41 -10.99 -0.08 8.52 16 7 O -0.53 -10.66 17.23 -14.30 -0.25 -10.91 16 8 N -0.64 -9.37 3.43 -180.47 -0.62 -9.99 16 9 C 0.12 1.66 7.97 -3.18 -0.03 1.63 16 10 C -0.10 -1.55 0.87 -154.45 -0.13 -1.68 16 11 C 0.12 1.65 7.25 -3.18 -0.02 1.63 16 12 C -0.08 -1.28 5.02 -26.82 -0.13 -1.42 16 13 C -0.14 -2.31 5.99 -26.81 -0.16 -2.47 16 14 C 0.15 3.18 4.62 -3.99 -0.02 3.17 16 15 N -0.60 -13.48 2.86 -172.75 -0.49 -13.97 16 16 C -0.35 -9.02 9.50 -15.06 -0.14 -9.16 16 17 H 0.06 1.43 7.94 -52.49 -0.42 1.01 16 18 C -0.02 -0.58 4.69 -17.43 -0.08 -0.66 16 19 N -0.91 -26.14 12.38 55.49 0.69 -25.45 16 20 Si 1.06 23.97 29.99 -169.99 -5.10 18.87 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.16 3.03 5.71 -3.81 -0.02 3.01 16 25 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.62 7.87 -51.92 -0.41 0.21 16 30 H 0.08 0.85 5.59 -51.93 -0.29 0.56 16 31 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 32 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 33 H 0.09 1.23 7.98 -51.93 -0.41 0.82 16 34 H 0.08 1.13 5.22 -51.93 -0.27 0.85 16 35 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.05 0.76 8.02 -51.93 -0.42 0.34 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.99 7.36 -51.93 -0.38 0.61 16 39 H 0.08 1.97 6.23 -51.93 -0.32 1.65 16 40 H 0.02 0.35 7.94 -51.93 -0.41 -0.06 16 41 H 0.27 7.77 6.77 -40.82 -0.28 7.50 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.09 7.78 -51.93 -0.40 0.69 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -31.58 338.63 -7.67 -39.25 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.00 Total: -0.60 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 0.54 Total: 3.26 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.43 Total: -49.41 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.79 Total: -16.46 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.10 Total: 18.87 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.58 -7.67 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981653018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.309 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds