Wall clock time and date at job start Tue Mar 31 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00301 * 2 1 4 4 H 1.08999 * 109.46579 * 30.00042 * 3 2 1 5 5 C 1.53001 * 109.47136 * 270.00144 * 3 2 1 6 6 C 1.50699 * 109.47168 * 150.00063 * 3 2 1 7 7 O 1.21276 * 120.00236 * 5.00344 * 6 3 2 8 8 N 1.34776 * 119.99894 * 185.00427 * 6 3 2 9 9 C 1.47670 * 134.45503 * 180.02562 * 8 6 3 10 10 C 1.53445 * 85.97550 * 155.70814 * 9 8 6 11 11 C 1.47674 * 134.45181 * 359.97438 * 8 6 3 12 12 C 1.52633 * 113.71483 * 268.85605 * 10 9 8 13 13 C 1.53183 * 109.35298 * 171.27226 * 12 10 9 14 14 C 1.52669 * 109.42857 * 58.92887 * 13 12 10 15 15 N 1.46902 * 109.34308 * 303.76841 * 14 13 12 16 16 C 1.36944 * 120.68830 * 235.31177 * 15 14 13 17 17 H 1.08001 * 119.99828 * 151.86347 * 16 15 14 18 18 C 1.38803 * 119.99932 * 331.86393 * 16 15 14 19 19 N 1.31619 * 120.00435 * 335.05172 * 18 16 15 20 20 Si 1.86799 * 120.00223 * 155.05291 * 18 16 15 21 21 H 1.48500 * 109.47410 * 89.99697 * 20 18 16 22 22 H 1.48495 * 109.47627 * 209.99922 * 20 18 16 23 23 H 1.48507 * 109.46931 * 329.99818 * 20 18 16 24 24 C 1.47119 * 118.62047 * 55.03887 * 15 14 13 25 25 H 1.08999 * 109.47060 * 59.99851 * 1 2 3 26 26 H 1.09001 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46660 * 299.99826 * 1 2 3 28 28 H 1.08998 * 109.47318 * 300.00010 * 5 3 2 29 29 H 1.09007 * 109.47188 * 59.99622 * 5 3 2 30 30 H 1.08999 * 109.46767 * 179.97438 * 5 3 2 31 31 H 1.09001 * 113.78847 * 41.44829 * 9 8 6 32 32 H 1.09000 * 113.90159 * 269.98839 * 9 8 6 33 33 H 1.09000 * 113.79087 * 90.02906 * 11 8 6 34 34 H 1.09000 * 113.79445 * 318.55302 * 11 8 6 35 35 H 1.09008 * 109.48858 * 291.23484 * 12 10 9 36 36 H 1.08998 * 109.49590 * 51.30343 * 12 10 9 37 37 H 1.08999 * 109.49054 * 179.01805 * 13 12 10 38 38 H 1.08997 * 109.49040 * 299.09174 * 13 12 10 39 39 H 1.08998 * 109.44336 * 183.78885 * 14 13 12 40 40 H 1.08998 * 109.37503 * 63.70665 * 14 13 12 41 41 H 0.97001 * 119.99673 * 354.26202 * 19 18 16 42 42 H 1.09000 * 109.63362 * 68.58036 * 24 15 14 43 43 H 1.09001 * 109.63332 * 189.19041 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7898 0.2045 1.0913 8 7 4.0255 2.4039 0.9224 9 6 5.3155 2.7303 1.5627 10 6 5.3145 3.9837 0.6774 11 6 3.7899 3.8271 0.6067 12 6 6.0132 3.7873 -0.6653 13 6 5.7674 5.0138 -1.5495 14 6 6.3012 6.2605 -0.8484 15 7 5.6722 6.3822 0.4735 16 6 5.0070 7.5254 0.8284 17 1 4.1975 7.4797 1.5419 18 6 5.3730 8.7428 0.2711 19 7 6.5959 8.9176 -0.1833 20 14 4.1301 10.1333 0.1658 21 1 4.2039 10.9577 1.3987 22 1 4.4340 10.9807 -1.0152 23 1 2.7640 9.5669 0.0302 24 6 5.7667 5.2482 1.4060 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.8829 1.0775 -1.9564 29 1 1.2569 1.8014 -1.9564 30 1 2.6607 2.7673 -1.4424 31 1 6.1138 2.0264 1.3273 32 1 5.2378 2.9447 2.6286 33 1 3.2556 4.3682 1.3876 34 1 3.3765 3.9943 -0.3880 35 1 7.0842 3.6644 -0.5035 36 1 5.6150 2.8993 -1.1562 37 1 6.2800 4.8836 -2.5027 38 1 4.6976 5.1278 -1.7241 39 1 6.0667 7.1413 -1.4461 40 1 7.3815 6.1750 -0.7315 41 1 7.2645 8.2268 -0.0541 42 1 6.7986 5.1311 1.7370 43 1 5.1210 5.4264 2.2659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981653018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:43 Heat of formation + Delta-G solvation = -44.244532 kcal Electronic energy + Delta-G solvation = -23543.767711 eV Core-core repulsion = 20204.181915 eV Total energy + Delta-G solvation = -3339.585797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00113 -40.13007 -38.48597 -37.59535 -34.58547 -33.09945 -32.29526 -31.01573 -27.78608 -27.41636 -27.31467 -27.05195 -24.54045 -23.98264 -22.30402 -20.49296 -19.33291 -19.23460 -18.33123 -17.84558 -17.10319 -16.67751 -16.29873 -16.22798 -15.85068 -15.40424 -15.27894 -15.12080 -14.78270 -14.55415 -14.05705 -13.94288 -13.75826 -13.52157 -13.33094 -13.21720 -12.86671 -12.79007 -12.63141 -12.47598 -12.15355 -11.92513 -11.86967 -11.74072 -11.61965 -11.32337 -11.05314 -11.03417 -10.58578 -10.36038 -9.77960 -8.84051 -8.16179 -5.31991 1.45048 1.54996 1.64454 1.71100 1.87667 2.70394 2.78776 3.19381 3.31590 3.39291 3.68375 3.76590 3.83571 3.93222 3.97956 4.20912 4.29067 4.33600 4.40123 4.44323 4.48474 4.50546 4.59145 4.64077 4.69990 4.75572 4.77680 4.81458 4.88990 4.89989 5.03166 5.05293 5.15628 5.22308 5.27327 5.37529 5.52509 5.92625 6.03772 6.47119 6.59279 7.02401 7.12464 7.85008 8.30370 9.08929 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.004485 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.841621 B = 6241.988453 C = 6739.139709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.078 3.922 4 H 0.106 0.894 5 C -0.165 4.165 6 C 0.529 3.471 7 O -0.580 6.580 8 N -0.635 5.635 9 C 0.118 3.882 10 C -0.096 4.096 11 C 0.123 3.877 12 C -0.077 4.077 13 C -0.123 4.123 14 C 0.154 3.846 15 N -0.611 5.611 16 C -0.346 4.346 17 H 0.057 0.943 18 C -0.075 4.075 19 N -0.947 5.947 20 Si 1.111 2.889 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.271 1.271 24 C 0.164 3.836 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.000 1.000 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.615 -12.188 -1.609 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.017 3.983 4 H 0.123 0.877 5 C -0.223 4.223 6 C 0.319 3.681 7 O -0.459 6.459 8 N -0.370 5.370 9 C -0.004 4.004 10 C -0.099 4.099 11 C 0.002 3.998 12 C -0.115 4.115 13 C -0.162 4.162 14 C 0.029 3.971 15 N -0.335 5.335 16 C -0.476 4.476 17 H 0.074 0.926 18 C -0.271 4.271 19 N -0.589 5.589 20 Si 0.936 3.064 21 H -0.215 1.215 22 H -0.222 1.222 23 H -0.196 1.196 24 C 0.038 3.962 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.018 0.982 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.667 -11.561 -1.988 15.855 hybrid contribution 0.568 -1.165 0.821 1.534 sum -10.098 -12.726 -1.167 16.288 Atomic orbital electron populations 1.23111 0.78517 1.04343 1.01431 1.87993 1.22063 1.26114 1.95183 1.21911 0.91884 0.86781 0.97745 0.87656 1.22241 1.04351 1.02125 0.93566 1.20678 0.86322 0.82145 0.78954 1.90665 1.70584 1.30881 1.53804 1.50090 1.22674 1.06439 1.57794 1.23267 0.84916 0.94027 0.98241 1.22387 0.95855 0.94690 0.96923 1.23378 0.96540 0.77423 1.02463 1.21068 0.99815 0.97375 0.93220 1.21827 1.01323 0.94874 0.98140 1.20698 0.93290 0.96569 0.86592 1.44300 1.64472 1.13523 1.11192 1.20203 1.11947 0.86960 1.28445 0.92558 1.27014 0.99741 1.00618 0.99769 1.70872 1.02135 1.35710 1.50222 0.82922 0.73839 0.73363 0.76260 1.21530 1.22192 1.19648 1.20853 0.97726 0.85767 0.91849 0.91904 0.88185 0.92971 0.92440 0.88985 0.90092 0.90163 0.88416 0.88815 0.88825 0.91954 0.91484 0.91078 0.92088 0.93716 0.98214 0.93561 0.96481 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.39 -10.19 9.89 -129.99 -1.29 -11.47 16 3 C 0.08 1.81 2.92 29.85 0.09 1.89 16 4 H 0.11 1.95 7.79 -2.39 -0.02 1.93 16 5 C -0.17 -3.15 9.44 71.98 0.68 -2.47 16 6 C 0.53 16.12 7.41 87.66 0.65 16.77 16 7 O -0.58 -22.89 17.23 15.97 0.28 -22.62 16 8 N -0.63 -17.15 3.43 -843.27 -2.89 -20.04 16 9 C 0.12 3.11 7.97 86.30 0.69 3.80 16 10 C -0.10 -2.75 0.87 -52.05 -0.05 -2.80 16 11 C 0.12 3.15 7.25 86.29 0.63 3.78 16 12 C -0.08 -2.20 5.02 30.53 0.15 -2.05 16 13 C -0.12 -3.98 5.99 30.55 0.18 -3.80 16 14 C 0.15 6.67 4.62 86.19 0.40 7.07 16 15 N -0.61 -27.48 2.86 -700.46 -2.00 -29.48 16 16 C -0.35 -17.68 9.50 84.03 0.80 -16.88 16 17 H 0.06 2.83 7.94 -2.91 -0.02 2.81 16 18 C -0.08 -4.03 4.69 84.86 0.40 -3.63 16 19 N -0.95 -55.44 12.38 21.65 0.27 -55.17 16 20 Si 1.11 48.16 29.99 68.60 2.06 50.22 16 21 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.30 -13.16 7.11 99.48 0.71 -12.46 16 23 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 24 C 0.16 5.92 5.71 86.19 0.49 6.41 16 25 H 0.06 0.73 7.87 -2.39 -0.02 0.71 16 26 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 0.71 8.08 -2.39 -0.02 0.69 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 1.32 7.87 -2.38 -0.02 1.30 16 30 H 0.08 1.49 5.59 -2.39 -0.01 1.47 16 31 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 32 H 0.10 2.35 8.09 -2.39 -0.02 2.33 16 33 H 0.09 2.35 7.98 -2.39 -0.02 2.33 16 34 H 0.09 2.23 5.22 -2.39 -0.01 2.22 16 35 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.07 1.76 8.02 -2.39 -0.02 1.74 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.95 7.36 -2.39 -0.02 1.93 16 39 H 0.04 2.25 6.23 -2.39 -0.01 2.23 16 40 H 0.00 -0.01 7.94 -2.39 -0.02 -0.03 16 41 H 0.25 15.20 6.77 -92.71 -0.63 14.58 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 2.17 7.78 -2.39 -0.02 2.15 16 Total: -1.00 -69.17 338.63 3.88 -65.30 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.12 Total: 13.60 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 6.33 Total: 9.66 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -4.63 Total: -104.69 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.01 Total: -34.09 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.06 Total: 50.22 kcal Total: -69.17 3.88 -65.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981653018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.053 kcal (2) G-P(sol) polarization free energy of solvation -69.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds