Wall clock time and date at job start Tue Mar 31 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00355 * 2 1 4 4 H 1.09000 * 109.47032 * 330.00126 * 3 2 1 5 5 C 1.53000 * 109.46833 * 89.99909 * 3 2 1 6 6 C 1.50699 * 109.47159 * 209.99919 * 3 2 1 7 7 O 1.21276 * 120.00236 * 0.02562 * 6 3 2 8 8 N 1.34776 * 119.99894 * 180.02562 * 6 3 2 9 9 C 1.47670 * 134.45503 * 180.02562 * 8 6 3 10 10 C 1.53445 * 85.97550 * 155.70814 * 9 8 6 11 11 C 1.47674 * 134.45181 * 359.97438 * 8 6 3 12 12 C 1.52633 * 113.71483 * 268.85605 * 10 9 8 13 13 C 1.53183 * 109.35298 * 171.27226 * 12 10 9 14 14 C 1.52669 * 109.42857 * 58.92887 * 13 12 10 15 15 N 1.46902 * 109.34308 * 303.76841 * 14 13 12 16 16 C 1.36944 * 120.68830 * 235.31177 * 15 14 13 17 17 H 1.08001 * 119.99828 * 151.86347 * 16 15 14 18 18 C 1.38803 * 119.99932 * 331.86393 * 16 15 14 19 19 N 1.31619 * 120.00435 * 335.05172 * 18 16 15 20 20 Si 1.86799 * 120.00223 * 155.05291 * 18 16 15 21 21 H 1.48500 * 109.47410 * 89.99697 * 20 18 16 22 22 H 1.48495 * 109.47627 * 209.99922 * 20 18 16 23 23 H 1.48507 * 109.46931 * 329.99818 * 20 18 16 24 24 C 1.47119 * 118.62047 * 55.03887 * 15 14 13 25 25 H 1.08997 * 109.47300 * 300.00527 * 1 2 3 26 26 H 1.09004 * 109.46895 * 59.99887 * 1 2 3 27 27 H 1.08997 * 109.47336 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47639 * 60.00333 * 5 3 2 29 29 H 1.09008 * 109.47122 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.47111 * 299.99817 * 5 3 2 31 31 H 1.09001 * 113.78847 * 41.44829 * 9 8 6 32 32 H 1.08993 * 113.79524 * 269.97669 * 9 8 6 33 33 H 1.09000 * 113.79087 * 90.02906 * 11 8 6 34 34 H 1.09000 * 113.79445 * 318.55302 * 11 8 6 35 35 H 1.09008 * 109.48858 * 291.23484 * 12 10 9 36 36 H 1.08998 * 109.49590 * 51.30343 * 12 10 9 37 37 H 1.08999 * 109.49054 * 179.01805 * 13 12 10 38 38 H 1.08997 * 109.49040 * 299.09174 * 13 12 10 39 39 H 1.08998 * 109.44336 * 183.78885 * 14 13 12 40 40 H 1.08998 * 109.37503 * 63.70665 * 14 13 12 41 41 H 0.97001 * 119.99673 * 354.26202 * 19 18 16 42 42 H 1.09000 * 109.63362 * 68.58036 * 24 15 14 43 43 H 1.09001 * 109.63332 * 189.19041 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.7472 0.2192 -1.1717 8 7 4.0728 2.3874 -0.8330 9 6 5.3773 2.7087 -1.4459 10 6 4.8497 4.1454 -1.5562 11 6 3.8944 3.7907 -0.4092 12 6 4.1403 4.4394 -2.8753 13 6 3.4690 5.8140 -2.7953 14 6 4.5250 6.8789 -2.5094 15 7 5.2466 6.5304 -1.2782 16 6 5.3201 7.4163 -0.2366 17 1 5.4233 7.0529 0.7752 18 6 5.2619 8.7814 -0.4811 19 7 5.6239 9.2559 -1.6543 20 14 4.6700 9.9453 0.8547 21 1 5.8276 10.3924 1.6704 22 1 4.0191 11.1251 0.2307 23 1 3.6926 9.2435 1.7252 24 6 5.8835 5.2075 -1.1852 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.8829 1.0774 1.9564 29 1 2.6607 2.7673 1.4426 30 1 1.2569 1.8014 1.9563 31 1 5.5415 2.2256 -2.4091 32 1 6.2215 2.6013 -0.7650 33 1 4.2969 4.0056 0.5807 34 1 2.8809 4.1669 -0.5490 35 1 4.8671 4.4362 -3.6877 36 1 3.3847 3.6758 -3.0599 37 1 2.9764 6.0337 -3.7425 38 1 2.7313 5.8123 -1.9930 39 1 4.0397 7.8470 -2.3858 40 1 5.2265 6.9253 -3.3423 41 1 6.0093 8.6638 -2.3189 42 1 6.7250 5.1567 -1.8761 43 1 6.2318 5.0395 -0.1661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981653019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:46 Heat of formation + Delta-G solvation = -26.152502 kcal Electronic energy + Delta-G solvation = -23498.970039 eV Core-core repulsion = 20160.168772 eV Total energy + Delta-G solvation = -3338.801267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76109 -38.97288 -37.33610 -36.03525 -32.97167 -32.00992 -30.67483 -29.57631 -27.01720 -26.16636 -26.14519 -25.23579 -23.51351 -22.39770 -20.74426 -19.24782 -18.00722 -17.41074 -17.27715 -16.81242 -15.97074 -15.53591 -15.23172 -14.58010 -14.23364 -14.12528 -13.93022 -13.63774 -13.40791 -13.27463 -12.99612 -12.80823 -12.43351 -12.40230 -12.11272 -11.85497 -11.81332 -11.52415 -11.27112 -11.05823 -10.75997 -10.49283 -10.30341 -10.12953 -10.06979 -10.05519 -9.85273 -9.43101 -9.30443 -8.58664 -8.40791 -6.93759 -6.12587 -3.29775 2.56234 2.74420 3.45698 3.48968 3.63965 3.70049 4.33895 4.48118 4.61897 4.72153 4.81262 5.00340 5.07563 5.13857 5.15524 5.25361 5.37379 5.42241 5.44283 5.46591 5.54002 5.57229 5.65424 5.70234 5.74914 5.88247 5.91054 5.91492 6.10978 6.25293 6.36897 6.42319 6.53642 6.61533 6.66724 6.85940 7.01749 7.14974 7.77651 7.92989 8.22705 8.51792 9.04466 9.78013 10.22630 11.15972 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.004485 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.248234 B = 6241.087001 C = 6754.280674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.075 3.925 4 H 0.085 0.915 5 C -0.171 4.171 6 C 0.535 3.465 7 O -0.532 6.532 8 N -0.640 5.640 9 C 0.117 3.883 10 C -0.102 4.102 11 C 0.120 3.880 12 C -0.083 4.083 13 C -0.136 4.136 14 C 0.148 3.852 15 N -0.596 5.596 16 C -0.350 4.350 17 H 0.056 0.944 18 C -0.022 4.022 19 N -0.915 5.915 20 Si 1.064 2.936 21 H -0.294 1.294 22 H -0.286 1.286 23 H -0.292 1.292 24 C 0.163 3.837 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.016 0.984 41 H 0.270 0.730 42 H 0.023 0.977 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 -11.696 2.333 14.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.014 3.986 4 H 0.103 0.897 5 C -0.229 4.229 6 C 0.323 3.677 7 O -0.408 6.408 8 N -0.377 5.377 9 C -0.005 4.005 10 C -0.105 4.105 11 C -0.002 4.002 12 C -0.121 4.121 13 C -0.175 4.175 14 C 0.022 3.978 15 N -0.319 5.319 16 C -0.479 4.479 17 H 0.074 0.926 18 C -0.224 4.224 19 N -0.554 5.554 20 Si 0.894 3.106 21 H -0.222 1.222 22 H -0.212 1.212 23 H -0.219 1.219 24 C 0.037 3.963 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.034 0.966 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.181 -11.007 2.472 13.935 hybrid contribution 0.137 -1.420 -0.213 1.443 sum -8.044 -12.427 2.259 14.975 Atomic orbital electron populations 1.22868 0.80730 1.03078 1.00075 1.88024 1.19586 1.25435 1.94959 1.21838 0.93524 0.86446 0.96806 0.89734 1.22250 1.03289 1.02484 0.94833 1.19995 0.85795 0.82234 0.79688 1.90692 1.72089 1.29471 1.48593 1.50123 1.21448 1.08545 1.57560 1.23236 0.85907 0.93233 0.98154 1.22585 0.97598 0.94354 0.95926 1.23286 1.00958 0.77145 0.98821 1.21119 0.98691 0.97409 0.94892 1.21993 0.99522 0.95729 1.00252 1.20844 0.91925 0.97028 0.87965 1.44096 1.58943 1.12902 1.15955 1.19932 1.52385 0.88736 0.86883 0.92618 1.25805 0.99139 0.95624 1.01852 1.70752 1.38811 1.38097 1.07787 0.83560 0.76430 0.75892 0.74756 1.22174 1.21211 1.21901 1.20779 0.91535 0.85111 0.98922 0.93826 0.93864 0.89227 0.91258 0.90467 0.91311 0.90340 0.89683 0.89302 0.90234 0.91997 0.93117 0.92853 0.92400 0.90155 0.96593 0.91906 0.95920 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.36 -5.01 9.88 -55.14 -0.54 -5.56 16 3 C 0.08 0.97 2.97 -27.88 -0.08 0.88 16 4 H 0.08 0.94 7.79 -51.93 -0.40 0.54 16 5 C -0.17 -1.84 9.40 37.16 0.35 -1.49 16 6 C 0.53 8.59 7.46 -10.99 -0.08 8.51 16 7 O -0.53 -10.67 17.23 -14.35 -0.25 -10.91 16 8 N -0.64 -9.35 3.41 -180.47 -0.62 -9.97 16 9 C 0.12 1.66 7.97 -3.18 -0.03 1.63 16 10 C -0.10 -1.56 0.87 -154.45 -0.13 -1.70 16 11 C 0.12 1.69 5.86 -3.18 -0.02 1.67 16 12 C -0.08 -1.28 5.02 -26.82 -0.13 -1.42 16 13 C -0.14 -2.32 5.99 -26.81 -0.16 -2.48 16 14 C 0.15 3.19 4.62 -3.99 -0.02 3.17 16 15 N -0.60 -13.48 2.86 -172.75 -0.49 -13.97 16 16 C -0.35 -9.01 9.50 -15.06 -0.14 -9.16 16 17 H 0.06 1.43 7.94 -52.49 -0.42 1.01 16 18 C -0.02 -0.58 4.69 -17.43 -0.08 -0.67 16 19 N -0.91 -26.14 12.38 55.49 0.69 -25.45 16 20 Si 1.06 23.96 29.99 -169.99 -5.10 18.86 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 24 C 0.16 3.03 5.71 -3.81 -0.02 3.01 16 25 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 26 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.81 6.12 -51.92 -0.32 0.49 16 30 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 31 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 32 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 33 H 0.09 1.24 7.79 -51.93 -0.40 0.83 16 34 H 0.08 1.09 7.36 -51.93 -0.38 0.71 16 35 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.05 0.74 8.02 -51.93 -0.42 0.33 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.00 7.36 -51.93 -0.38 0.62 16 39 H 0.08 1.98 6.23 -51.93 -0.32 1.65 16 40 H 0.02 0.36 7.94 -51.93 -0.41 -0.06 16 41 H 0.27 7.77 6.77 -40.82 -0.28 7.50 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.10 7.78 -51.93 -0.40 0.69 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -31.58 339.77 -7.78 -39.36 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.13 Total: -0.81 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 0.54 Total: 3.33 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.42 Total: -49.40 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.79 Total: -16.47 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.10 Total: 18.86 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.58 -7.78 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981653019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.205 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds