Wall clock time and date at job start Tue Mar 31 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00355 * 2 1 4 4 H 1.09000 * 109.47032 * 330.00126 * 3 2 1 5 5 C 1.53000 * 109.46833 * 89.99909 * 3 2 1 6 6 C 1.50699 * 109.47159 * 209.99919 * 3 2 1 7 7 O 1.21276 * 120.00236 * 0.02562 * 6 3 2 8 8 N 1.34776 * 119.99894 * 180.02562 * 6 3 2 9 9 C 1.47670 * 134.45503 * 180.02562 * 8 6 3 10 10 C 1.53445 * 85.97550 * 155.70814 * 9 8 6 11 11 C 1.47674 * 134.45181 * 359.97438 * 8 6 3 12 12 C 1.52633 * 113.71483 * 268.85605 * 10 9 8 13 13 C 1.53183 * 109.35298 * 171.27226 * 12 10 9 14 14 C 1.52669 * 109.42857 * 58.92887 * 13 12 10 15 15 N 1.46902 * 109.34308 * 303.76841 * 14 13 12 16 16 C 1.36944 * 120.68830 * 235.31177 * 15 14 13 17 17 H 1.08001 * 119.99828 * 151.86347 * 16 15 14 18 18 C 1.38803 * 119.99932 * 331.86393 * 16 15 14 19 19 N 1.31619 * 120.00435 * 335.05172 * 18 16 15 20 20 Si 1.86799 * 120.00223 * 155.05291 * 18 16 15 21 21 H 1.48500 * 109.47410 * 89.99697 * 20 18 16 22 22 H 1.48495 * 109.47627 * 209.99922 * 20 18 16 23 23 H 1.48507 * 109.46931 * 329.99818 * 20 18 16 24 24 C 1.47119 * 118.62047 * 55.03887 * 15 14 13 25 25 H 1.08997 * 109.47300 * 300.00527 * 1 2 3 26 26 H 1.09004 * 109.46895 * 59.99887 * 1 2 3 27 27 H 1.08997 * 109.47336 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47639 * 60.00333 * 5 3 2 29 29 H 1.09008 * 109.47122 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.47111 * 299.99817 * 5 3 2 31 31 H 1.09001 * 113.78847 * 41.44829 * 9 8 6 32 32 H 1.08993 * 113.79524 * 269.97669 * 9 8 6 33 33 H 1.09000 * 113.79087 * 90.02906 * 11 8 6 34 34 H 1.09000 * 113.79445 * 318.55302 * 11 8 6 35 35 H 1.09008 * 109.48858 * 291.23484 * 12 10 9 36 36 H 1.08998 * 109.49590 * 51.30343 * 12 10 9 37 37 H 1.08999 * 109.49054 * 179.01805 * 13 12 10 38 38 H 1.08997 * 109.49040 * 299.09174 * 13 12 10 39 39 H 1.08998 * 109.44336 * 183.78885 * 14 13 12 40 40 H 1.08998 * 109.37503 * 63.70665 * 14 13 12 41 41 H 0.97001 * 119.99673 * 354.26202 * 19 18 16 42 42 H 1.09000 * 109.63362 * 68.58036 * 24 15 14 43 43 H 1.09001 * 109.63332 * 189.19041 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.7472 0.2192 -1.1717 8 7 4.0728 2.3874 -0.8330 9 6 5.3773 2.7087 -1.4459 10 6 4.8497 4.1454 -1.5562 11 6 3.8944 3.7907 -0.4092 12 6 4.1403 4.4394 -2.8753 13 6 3.4690 5.8140 -2.7953 14 6 4.5250 6.8789 -2.5094 15 7 5.2466 6.5304 -1.2782 16 6 5.3201 7.4163 -0.2366 17 1 5.4233 7.0529 0.7752 18 6 5.2619 8.7814 -0.4811 19 7 5.6239 9.2559 -1.6543 20 14 4.6700 9.9453 0.8547 21 1 5.8276 10.3924 1.6704 22 1 4.0191 11.1251 0.2307 23 1 3.6926 9.2435 1.7252 24 6 5.8835 5.2075 -1.1852 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.8829 1.0774 1.9564 29 1 2.6607 2.7673 1.4426 30 1 1.2569 1.8014 1.9563 31 1 5.5415 2.2256 -2.4091 32 1 6.2215 2.6013 -0.7650 33 1 4.2969 4.0056 0.5807 34 1 2.8809 4.1669 -0.5490 35 1 4.8671 4.4362 -3.6877 36 1 3.3847 3.6758 -3.0599 37 1 2.9764 6.0337 -3.7425 38 1 2.7313 5.8123 -1.9930 39 1 4.0397 7.8470 -2.3858 40 1 5.2265 6.9253 -3.3423 41 1 6.0093 8.6638 -2.3189 42 1 6.7250 5.1567 -1.8761 43 1 6.2318 5.0395 -0.1661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981653019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:45 Heat of formation + Delta-G solvation = -45.446509 kcal Electronic energy + Delta-G solvation = -23499.806690 eV Core-core repulsion = 20160.168772 eV Total energy + Delta-G solvation = -3339.637918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.99369 -40.13550 -38.48220 -37.59772 -34.60471 -33.08925 -32.31590 -30.96792 -27.78440 -27.43137 -27.31791 -27.03688 -24.54208 -24.00464 -22.29273 -20.46811 -19.34299 -19.23832 -18.34167 -17.85135 -17.14336 -16.65908 -16.26072 -16.17775 -15.85517 -15.41385 -15.31079 -15.05976 -14.79769 -14.56690 -14.08983 -13.94524 -13.71141 -13.44022 -13.34121 -13.18980 -12.92578 -12.81545 -12.68537 -12.47077 -12.14214 -11.95944 -11.86935 -11.75394 -11.61534 -11.33461 -11.05896 -11.03487 -10.57231 -10.35752 -9.78877 -8.84155 -8.16198 -5.31991 1.41458 1.60003 1.64600 1.71159 1.87713 2.70406 2.77597 3.18595 3.32263 3.40686 3.67721 3.75341 3.84540 3.93947 3.96441 4.20956 4.28528 4.37291 4.42645 4.47831 4.50454 4.53907 4.58323 4.59276 4.66276 4.73539 4.79051 4.81462 4.88769 4.89479 5.02577 5.05164 5.11000 5.21490 5.26901 5.36875 5.52008 5.92744 6.03657 6.47107 6.59496 7.02561 7.12403 7.84962 8.30330 9.08949 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.004485 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.248234 B = 6241.087001 C = 6754.280674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.077 3.923 4 H 0.105 0.895 5 C -0.164 4.164 6 C 0.529 3.471 7 O -0.580 6.580 8 N -0.634 5.634 9 C 0.118 3.882 10 C -0.097 4.097 11 C 0.127 3.873 12 C -0.077 4.077 13 C -0.123 4.123 14 C 0.154 3.846 15 N -0.611 5.611 16 C -0.346 4.346 17 H 0.057 0.943 18 C -0.075 4.075 19 N -0.947 5.947 20 Si 1.111 2.889 21 H -0.288 1.288 22 H -0.296 1.296 23 H -0.271 1.271 24 C 0.164 3.836 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.000 1.000 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.606 -12.530 3.488 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.313 6.313 3 C 0.016 3.984 4 H 0.123 0.877 5 C -0.222 4.222 6 C 0.319 3.681 7 O -0.460 6.460 8 N -0.370 5.370 9 C -0.004 4.004 10 C -0.100 4.100 11 C 0.006 3.994 12 C -0.115 4.115 13 C -0.162 4.162 14 C 0.028 3.972 15 N -0.335 5.335 16 C -0.475 4.475 17 H 0.075 0.925 18 C -0.272 4.272 19 N -0.590 5.590 20 Si 0.936 3.064 21 H -0.215 1.215 22 H -0.222 1.222 23 H -0.196 1.196 24 C 0.038 3.962 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.018 0.982 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.779 -11.860 3.640 15.797 hybrid contribution 0.678 -1.207 -0.598 1.508 sum -9.101 -13.066 3.042 16.212 Atomic orbital electron populations 1.23106 0.78523 1.04335 1.01408 1.87985 1.22067 1.26120 1.95178 1.21907 0.91972 0.86792 0.97701 0.87699 1.22220 1.04374 1.02110 0.93494 1.20679 0.86811 0.81570 0.79063 1.90665 1.73416 1.31135 1.50762 1.50104 1.21360 1.08551 1.56963 1.23268 0.86372 0.92037 0.98745 1.22400 0.97226 0.93765 0.96580 1.23293 1.01211 0.76453 0.98477 1.21065 0.98946 0.96531 0.94912 1.21829 0.98092 0.95059 1.01215 1.20698 0.92416 0.96954 0.87093 1.44300 1.59825 1.13794 1.15565 1.20206 1.50305 0.89261 0.87764 0.92520 1.27014 0.99598 0.97683 1.02859 1.70873 1.41464 1.37899 1.08722 0.82924 0.76475 0.74091 0.72904 1.21527 1.22210 1.19627 1.20851 0.92204 0.84116 0.99006 0.91873 0.93052 0.88184 0.92417 0.90070 0.89011 0.90135 0.88457 0.88701 0.89122 0.91917 0.91557 0.91087 0.92143 0.93719 0.98188 0.93565 0.96485 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.57 16 2 O -0.39 -10.20 9.88 -129.94 -1.28 -11.48 16 3 C 0.08 1.80 2.97 29.85 0.09 1.88 16 4 H 0.11 1.98 7.79 -2.39 -0.02 1.96 16 5 C -0.16 -3.07 9.40 71.98 0.68 -2.39 16 6 C 0.53 16.10 7.46 87.66 0.65 16.75 16 7 O -0.58 -22.90 17.23 16.02 0.28 -22.62 16 8 N -0.63 -17.10 3.41 -843.28 -2.88 -19.98 16 9 C 0.12 3.11 7.97 86.30 0.69 3.80 16 10 C -0.10 -2.78 0.87 -52.05 -0.05 -2.82 16 11 C 0.13 3.23 5.86 86.29 0.51 3.74 16 12 C -0.08 -2.19 5.02 30.53 0.15 -2.04 16 13 C -0.12 -4.00 5.99 30.55 0.18 -3.81 16 14 C 0.15 6.67 4.62 86.19 0.40 7.07 16 15 N -0.61 -27.46 2.86 -700.46 -2.00 -29.47 16 16 C -0.35 -17.65 9.50 84.03 0.80 -16.86 16 17 H 0.06 2.85 7.94 -2.91 -0.02 2.82 16 18 C -0.08 -4.03 4.69 84.86 0.40 -3.63 16 19 N -0.95 -55.44 12.38 21.65 0.27 -55.18 16 20 Si 1.11 48.16 29.99 68.60 2.06 50.21 16 21 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.30 -13.17 7.11 99.48 0.71 -12.47 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 24 C 0.16 5.92 5.71 86.19 0.49 6.41 16 25 H 0.06 0.74 7.87 -2.39 -0.02 0.72 16 26 H 0.05 0.72 8.09 -2.38 -0.02 0.70 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.44 6.12 -2.38 -0.01 1.42 16 30 H 0.09 1.29 7.87 -2.39 -0.02 1.27 16 31 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 32 H 0.10 2.34 8.09 -2.39 -0.02 2.32 16 33 H 0.09 2.36 7.79 -2.39 -0.02 2.34 16 34 H 0.09 2.15 7.36 -2.39 -0.02 2.14 16 35 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.07 1.74 8.02 -2.39 -0.02 1.72 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 1.95 7.36 -2.39 -0.02 1.93 16 39 H 0.04 2.25 6.23 -2.39 -0.01 2.23 16 40 H 0.00 0.01 7.94 -2.39 -0.02 -0.01 16 41 H 0.25 15.20 6.77 -92.71 -0.63 14.57 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 2.18 7.78 -2.39 -0.02 2.16 16 Total: -1.00 -69.16 339.77 3.77 -65.38 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.12 Total: 13.46 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 6.22 Total: 9.67 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -4.61 Total: -104.62 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.01 Total: -34.11 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.06 Total: 50.21 kcal Total: -69.16 3.77 -65.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981653019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.935 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds