Wall clock time and date at job start Tue Mar 31 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42898 * 109.47057 * 2 1 4 4 C 1.42906 * 114.00239 * 180.02562 * 3 2 1 5 5 C 1.53777 * 113.61553 * 149.99949 * 4 3 2 6 6 C 1.53771 * 87.08277 * 89.11653 * 5 4 3 7 7 C 1.50704 * 113.61695 * 139.98062 * 6 5 4 8 8 O 1.21280 * 119.99851 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99862 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99434 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.64376 * 325.70163 * 10 9 7 12 12 C 1.55164 * 110.86896 * 202.45271 * 10 9 7 13 13 C 1.54904 * 101.58098 * 277.06824 * 12 10 9 14 14 N 1.47435 * 104.83391 * 322.99259 * 13 12 10 15 15 C 1.36934 * 125.64724 * 204.16628 * 14 13 12 16 16 H 1.07999 * 119.99710 * 179.97438 * 15 14 13 17 17 C 1.38814 * 120.00319 * 359.95195 * 15 14 13 18 18 N 1.31618 * 119.99668 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00304 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47245 * 120.00239 * 19 17 15 22 22 H 1.48500 * 109.47390 * 240.00500 * 19 17 15 23 23 C 1.47022 * 108.70089 * 24.12919 * 14 13 12 24 24 C 1.53774 * 113.61295 * 247.49751 * 4 3 2 25 25 H 1.09003 * 109.47304 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47458 * 299.99997 * 1 2 3 27 27 H 1.09005 * 109.47190 * 60.00319 * 1 2 3 28 28 H 1.09003 * 109.47458 * 240.00003 * 2 1 3 29 29 H 1.08999 * 109.47020 * 120.00085 * 2 1 3 30 30 H 1.08998 * 112.90484 * 18.74689 * 4 3 2 31 31 H 1.08999 * 113.61672 * 334.56239 * 5 4 3 32 32 H 1.09004 * 113.61453 * 203.66790 * 5 4 3 33 33 H 1.09003 * 113.61632 * 270.79805 * 6 5 4 34 34 H 0.96999 * 120.00054 * 359.97438 * 9 7 6 35 35 H 1.08995 * 111.00581 * 35.14242 * 12 10 9 36 36 H 1.09001 * 111.00047 * 158.99707 * 12 10 9 37 37 H 1.08997 * 110.37110 * 204.15638 * 13 12 10 38 38 H 1.09005 * 110.37140 * 81.82538 * 13 12 10 39 39 H 0.97000 * 119.99871 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.87665 * 239.52284 * 23 14 13 41 41 H 1.08996 * 110.00949 * 118.43459 * 23 14 13 42 42 H 1.09001 * 113.61513 * 156.33218 * 24 4 3 43 43 H 1.08997 * 113.62037 * 25.43017 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9483 2.7254 -0.7051 6 6 3.8395 3.4326 0.6559 7 6 4.9841 4.3703 0.9422 8 8 5.8747 4.5057 0.1302 9 7 5.0185 5.0576 2.1011 10 6 6.1315 5.9686 2.3796 11 1 7.0587 5.5836 1.9550 12 6 6.2832 6.2058 3.9054 13 6 5.2299 7.3140 4.1541 14 7 5.2957 8.1727 2.9574 15 6 4.9229 9.4890 2.8982 16 1 5.0103 10.0337 1.9697 17 6 4.4323 10.1232 4.0313 18 7 4.3259 9.4593 5.1629 19 14 3.9245 11.9190 3.9507 20 1 4.1410 12.4333 2.5744 21 1 2.4877 12.0435 4.3049 22 1 4.7406 12.7077 4.9084 23 6 5.8287 7.3818 1.8385 24 6 4.0028 2.0462 1.3010 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9287 0.5459 -0.3236 31 1 3.2634 3.1175 -1.4570 32 1 4.9715 2.6346 -1.0696 33 1 2.8651 3.8871 0.8353 34 1 4.3064 4.9490 2.7507 35 1 6.0410 5.3036 4.4670 36 1 7.2857 6.5580 4.1483 37 1 5.4847 7.8864 5.0460 38 1 4.2360 6.8776 4.2535 39 1 3.9834 9.9026 5.9548 40 1 6.7444 7.8395 1.4642 41 1 5.0904 7.3223 1.0388 42 1 5.0410 1.7698 1.4851 43 1 3.3621 1.8902 2.1688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010812877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:30 Heat of formation + Delta-G solvation = -37.470374 kcal Electronic energy + Delta-G solvation = -22388.546792 eV Core-core repulsion = 19049.254745 eV Total energy + Delta-G solvation = -3339.292047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.40107 -38.78875 -37.23819 -35.86748 -33.76035 -31.77001 -31.15633 -29.19300 -27.51829 -25.89257 -25.81784 -24.34823 -23.12367 -21.28263 -20.17603 -19.75163 -19.48575 -17.59865 -16.82943 -16.40513 -16.05311 -15.77999 -15.43085 -14.69565 -14.55199 -14.04188 -13.75415 -13.70199 -13.24735 -12.98171 -12.85152 -12.59921 -12.37382 -12.01514 -11.85636 -11.64389 -11.60051 -11.52411 -11.05138 -10.89362 -10.78539 -10.74319 -10.54799 -10.36855 -10.08801 -9.87111 -9.73325 -9.58032 -9.34706 -8.70742 -8.56694 -6.82706 -5.65569 -3.06281 2.88781 3.29967 3.40376 3.46301 3.48745 3.55119 4.33862 4.45656 4.50401 4.61904 4.75070 4.78575 4.95843 5.06428 5.10580 5.23466 5.41547 5.44122 5.46275 5.52598 5.57237 5.60622 5.65259 5.78641 5.80553 5.87404 5.89021 5.95373 6.12026 6.29329 6.39933 6.50983 6.60267 6.75532 7.02099 7.09980 7.44283 7.63733 7.81881 7.90502 8.35235 8.55702 9.22800 9.83426 10.48063 11.38795 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.003310 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.894438 B = 8456.094112 C = 8952.855504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.366 6.366 4 C 0.064 3.936 5 C -0.116 4.116 6 C -0.130 4.130 7 C 0.521 3.479 8 O -0.550 6.550 9 N -0.708 5.708 10 C 0.130 3.870 11 H 0.087 0.913 12 C -0.153 4.153 13 C 0.152 3.848 14 N -0.603 5.603 15 C -0.218 4.218 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.924 5.924 19 Si 0.915 3.085 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.127 3.873 24 C -0.141 4.141 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.401 0.599 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.010 0.990 39 H 0.251 0.749 40 H 0.030 0.970 41 H 0.025 0.975 42 H 0.093 0.907 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 -20.094 -6.709 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.285 6.285 4 C 0.005 3.995 5 C -0.153 4.153 6 C -0.151 4.151 7 C 0.307 3.693 8 O -0.428 6.428 9 N -0.358 5.358 10 C 0.025 3.975 11 H 0.105 0.895 12 C -0.192 4.192 13 C 0.027 3.973 14 N -0.330 5.330 15 C -0.347 4.347 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.573 5.573 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.000 4.000 24 C -0.179 4.179 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.235 0.765 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.028 0.972 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.111 0.889 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.728 -19.649 -7.164 21.091 hybrid contribution -0.595 0.744 0.349 1.015 sum -3.323 -18.904 -6.815 20.368 Atomic orbital electron populations 1.21754 0.93705 1.02204 1.03319 1.22530 0.95604 0.83829 1.00031 1.87914 1.19733 1.26308 1.94551 1.23018 0.81530 0.98223 0.96688 1.23095 1.02637 0.93751 0.95843 1.22688 0.98716 0.94585 0.99100 1.20425 0.87100 0.80314 0.81428 1.90652 1.39282 1.66323 1.46528 1.46014 1.26326 1.43627 1.19811 1.21980 0.89006 0.89558 0.96982 0.89521 1.23332 1.02306 1.00449 0.93125 1.21947 0.92859 0.89064 0.93461 1.44527 1.75122 1.07943 1.05399 1.19145 1.34693 0.84830 0.96014 0.90479 1.24774 1.01768 0.98529 0.95755 1.69792 1.52399 1.34770 1.00347 0.85986 0.77844 0.84333 0.77288 1.20546 1.21796 1.21751 1.21683 0.96821 0.89701 0.91754 1.23365 1.02029 0.94229 0.98242 0.91159 0.91708 0.91806 0.93365 0.93328 0.90542 0.90189 0.87584 0.86640 0.76520 0.91783 0.90690 0.87422 0.97166 0.93839 0.95210 0.95683 0.88886 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.44 6.50 37.16 0.24 0.68 16 3 O -0.37 -3.88 10.27 -35.23 -0.36 -4.24 16 4 C 0.06 0.62 4.37 -25.92 -0.11 0.50 16 5 C -0.12 -1.32 7.24 -25.93 -0.19 -1.51 16 6 C -0.13 -1.61 4.08 -90.96 -0.37 -1.98 16 7 C 0.52 8.33 7.35 -10.98 -0.08 8.25 16 8 O -0.55 -10.54 15.58 5.56 0.09 -10.45 16 9 N -0.71 -11.50 5.11 -52.02 -0.27 -11.77 16 10 C 0.13 2.39 3.28 -66.09 -0.22 2.18 16 11 H 0.09 1.58 7.62 -51.93 -0.40 1.18 16 12 C -0.15 -2.81 6.66 -24.58 -0.16 -2.97 16 13 C 0.15 3.58 5.87 -2.53 -0.01 3.57 16 14 N -0.60 -15.63 3.39 -170.07 -0.58 -16.21 16 15 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 18 N -0.92 -26.78 10.09 55.49 0.56 -26.22 16 19 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C 0.13 2.85 6.98 -3.06 -0.02 2.83 16 24 C -0.14 -1.41 7.46 -25.92 -0.19 -1.61 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.11 1.27 7.43 -51.93 -0.39 0.88 16 33 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.40 5.97 8.64 -40.82 -0.35 5.61 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.03 0.59 8.04 -51.93 -0.42 0.18 16 42 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -32.15 348.59 -8.62 -40.77 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.31 Total: 3.13 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.99 Total: 2.46 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.28 Total: -54.20 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.28 Total: -14.69 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.15 -8.62 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010812877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.300 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds