Wall clock time and date at job start Tue Mar 31 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42898 * 109.47057 * 2 1 4 4 C 1.42906 * 114.00239 * 180.02562 * 3 2 1 5 5 C 1.53777 * 113.61553 * 149.99949 * 4 3 2 6 6 C 1.53771 * 87.08277 * 89.11653 * 5 4 3 7 7 C 1.50704 * 113.61695 * 139.98062 * 6 5 4 8 8 O 1.21280 * 119.99851 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99862 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99434 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.64376 * 325.70163 * 10 9 7 12 12 C 1.55164 * 110.86896 * 202.45271 * 10 9 7 13 13 C 1.54904 * 101.58098 * 277.06824 * 12 10 9 14 14 N 1.47435 * 104.83391 * 322.99259 * 13 12 10 15 15 C 1.36934 * 125.64724 * 204.16628 * 14 13 12 16 16 H 1.07999 * 119.99710 * 179.97438 * 15 14 13 17 17 C 1.38814 * 120.00319 * 359.95195 * 15 14 13 18 18 N 1.31618 * 119.99668 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00304 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47245 * 120.00239 * 19 17 15 22 22 H 1.48500 * 109.47390 * 240.00500 * 19 17 15 23 23 C 1.47022 * 108.70089 * 24.12919 * 14 13 12 24 24 C 1.53774 * 113.61295 * 247.49751 * 4 3 2 25 25 H 1.09003 * 109.47304 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47458 * 299.99997 * 1 2 3 27 27 H 1.09005 * 109.47190 * 60.00319 * 1 2 3 28 28 H 1.09003 * 109.47458 * 240.00003 * 2 1 3 29 29 H 1.08999 * 109.47020 * 120.00085 * 2 1 3 30 30 H 1.08998 * 112.90484 * 18.74689 * 4 3 2 31 31 H 1.08999 * 113.61672 * 334.56239 * 5 4 3 32 32 H 1.09004 * 113.61453 * 203.66790 * 5 4 3 33 33 H 1.09003 * 113.61632 * 270.79805 * 6 5 4 34 34 H 0.96999 * 120.00054 * 359.97438 * 9 7 6 35 35 H 1.08995 * 111.00581 * 35.14242 * 12 10 9 36 36 H 1.09001 * 111.00047 * 158.99707 * 12 10 9 37 37 H 1.08997 * 110.37110 * 204.15638 * 13 12 10 38 38 H 1.09005 * 110.37140 * 81.82538 * 13 12 10 39 39 H 0.97000 * 119.99871 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.87665 * 239.52284 * 23 14 13 41 41 H 1.08996 * 110.00949 * 118.43459 * 23 14 13 42 42 H 1.09001 * 113.61513 * 156.33218 * 24 4 3 43 43 H 1.08997 * 113.62037 * 25.43017 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9483 2.7254 -0.7051 6 6 3.8395 3.4326 0.6559 7 6 4.9841 4.3703 0.9422 8 8 5.8747 4.5057 0.1302 9 7 5.0185 5.0576 2.1011 10 6 6.1315 5.9686 2.3796 11 1 7.0587 5.5836 1.9550 12 6 6.2832 6.2058 3.9054 13 6 5.2299 7.3140 4.1541 14 7 5.2957 8.1727 2.9574 15 6 4.9229 9.4890 2.8982 16 1 5.0103 10.0337 1.9697 17 6 4.4323 10.1232 4.0313 18 7 4.3259 9.4593 5.1629 19 14 3.9245 11.9190 3.9507 20 1 4.1410 12.4333 2.5744 21 1 2.4877 12.0435 4.3049 22 1 4.7406 12.7077 4.9084 23 6 5.8287 7.3818 1.8385 24 6 4.0028 2.0462 1.3010 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9287 0.5459 -0.3236 31 1 3.2634 3.1175 -1.4570 32 1 4.9715 2.6346 -1.0696 33 1 2.8651 3.8871 0.8353 34 1 4.3064 4.9490 2.7507 35 1 6.0410 5.3036 4.4670 36 1 7.2857 6.5580 4.1483 37 1 5.4847 7.8864 5.0460 38 1 4.2360 6.8776 4.2535 39 1 3.9834 9.9026 5.9548 40 1 6.7444 7.8395 1.4642 41 1 5.0904 7.3223 1.0388 42 1 5.0410 1.7698 1.4851 43 1 3.3621 1.8902 2.1688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010812877.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:30 Heat of formation + Delta-G solvation = -58.621237 kcal Electronic energy + Delta-G solvation = -22389.463962 eV Core-core repulsion = 19049.254745 eV Total energy + Delta-G solvation = -3340.209217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.50527 -39.95384 -38.72798 -36.77846 -35.47139 -33.59494 -31.78708 -31.02024 -29.17873 -27.17421 -26.69338 -26.16576 -23.68714 -22.49669 -22.05397 -21.28624 -20.45578 -19.03445 -18.49020 -17.49878 -17.16179 -16.73919 -16.51627 -16.43962 -15.90111 -15.55461 -15.22383 -14.97345 -14.36962 -14.23240 -13.90229 -13.80200 -13.44735 -13.40745 -13.33506 -13.00515 -12.83156 -12.64415 -12.42919 -12.34950 -12.20687 -12.11435 -12.00120 -11.85203 -11.59220 -11.44772 -11.39557 -10.77291 -10.70266 -10.38063 -10.05721 -8.90899 -7.79730 -5.23561 1.46028 1.46349 1.57008 1.62333 2.25366 2.48143 2.63782 3.30300 3.46832 3.59530 3.66472 3.74765 3.79070 3.92329 4.06876 4.24030 4.28213 4.30538 4.32136 4.44254 4.55292 4.63586 4.73249 4.76165 4.80736 4.88604 4.90378 4.99900 5.01350 5.03947 5.07444 5.10602 5.24297 5.31775 5.42874 5.58678 5.63233 5.79358 6.30208 6.35407 6.60273 7.10091 7.26885 7.75581 8.38948 9.21916 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.003310 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.894438 B = 8456.094112 C = 8952.855504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.388 6.388 4 C 0.073 3.927 5 C -0.119 4.119 6 C -0.132 4.132 7 C 0.521 3.479 8 O -0.583 6.583 9 N -0.705 5.705 10 C 0.144 3.856 11 H 0.097 0.903 12 C -0.132 4.132 13 C 0.154 3.846 14 N -0.622 5.622 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.062 4.062 18 N -0.944 5.944 19 Si 0.980 3.020 20 H -0.272 1.272 21 H -0.290 1.290 22 H -0.288 1.288 23 C 0.125 3.875 24 C -0.129 4.129 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.408 0.592 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.076 0.924 38 H -0.004 1.004 39 H 0.249 0.751 40 H 0.026 0.974 41 H 0.008 0.992 42 H 0.100 0.900 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -21.800 -6.685 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.308 6.308 4 C 0.015 3.985 5 C -0.157 4.157 6 C -0.153 4.153 7 C 0.310 3.690 8 O -0.463 6.463 9 N -0.355 5.355 10 C 0.038 3.962 11 H 0.114 0.886 12 C -0.170 4.170 13 C 0.029 3.971 14 N -0.349 5.349 15 C -0.371 4.371 16 H 0.090 0.910 17 C -0.255 4.255 18 N -0.593 5.593 19 Si 0.808 3.192 20 H -0.197 1.197 21 H -0.217 1.217 22 H -0.215 1.215 23 C -0.001 4.001 24 C -0.167 4.167 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.244 0.756 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.014 0.986 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.026 0.974 42 H 0.118 0.882 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.906 -21.383 -7.141 22.731 hybrid contribution -0.571 1.280 0.297 1.432 sum -3.477 -20.104 -6.844 21.520 Atomic orbital electron populations 1.21782 0.93319 1.03319 1.02524 1.22744 0.95999 0.82743 1.01180 1.87892 1.20055 1.28206 1.94603 1.22934 0.81531 0.98239 0.95758 1.23103 1.02375 0.94926 0.95261 1.22764 0.96965 0.94949 1.00639 1.21046 0.87432 0.80054 0.80515 1.90636 1.40848 1.67412 1.47412 1.45979 1.26046 1.43086 1.20371 1.21729 0.90071 0.87705 0.96691 0.88553 1.23166 1.00806 0.99799 0.93275 1.21775 0.93780 0.89868 0.91640 1.44790 1.75128 1.07836 1.07128 1.19423 1.35233 0.86349 0.96088 0.90991 1.25570 1.01970 1.02471 0.95472 1.70020 1.52660 1.36043 1.00620 0.84994 0.77154 0.79564 0.77490 1.19719 1.21695 1.21455 1.21782 0.95790 0.91880 0.90676 1.23352 1.02728 0.91897 0.98744 0.89119 0.92538 0.92548 0.92162 0.92157 0.88222 0.90726 0.88160 0.86655 0.75593 0.88299 0.90018 0.90593 0.98557 0.94161 0.95651 0.97375 0.88177 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.05 0.65 6.50 71.98 0.47 1.12 16 3 O -0.39 -7.46 10.27 -148.98 -1.53 -8.99 16 4 C 0.07 1.26 4.37 31.12 0.14 1.39 16 5 C -0.12 -2.58 7.24 31.12 0.23 -2.36 16 6 C -0.13 -3.12 4.08 -11.02 -0.04 -3.17 16 7 C 0.52 16.17 7.35 87.66 0.64 16.82 16 8 O -0.58 -22.03 15.58 -3.03 -0.05 -22.08 16 9 N -0.70 -22.06 5.11 -436.89 -2.23 -24.29 16 10 C 0.14 5.15 3.28 46.18 0.15 5.30 16 11 H 0.10 3.35 7.62 -2.39 -0.02 3.33 16 12 C -0.13 -4.62 6.66 31.99 0.21 -4.40 16 13 C 0.15 7.32 5.87 86.85 0.51 7.83 16 14 N -0.62 -32.72 3.39 -691.98 -2.35 -35.07 16 15 C -0.24 -13.95 10.27 84.03 0.86 -13.08 16 16 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 17 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 18 N -0.94 -55.45 10.09 21.65 0.22 -55.24 16 19 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 C 0.13 5.65 6.98 86.73 0.61 6.26 16 24 C -0.13 -2.28 7.46 31.12 0.23 -2.05 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 1.27 7.87 -2.39 -0.02 1.25 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.10 2.31 7.43 -2.39 -0.02 2.29 16 33 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.41 11.58 8.64 -92.71 -0.80 10.78 16 35 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.08 4.13 5.87 -2.39 -0.01 4.12 16 38 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 39 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.01 0.40 8.04 -2.39 -0.02 0.38 16 42 H 0.10 1.66 8.09 -2.39 -0.02 1.64 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -69.71 348.59 1.48 -68.23 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.19 Total: 19.73 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.21 Total: 9.51 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -4.36 Total: -114.59 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.58 Total: -31.06 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -69.71 1.48 -68.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010812877.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.610 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds