Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.47032 * 2 1 4 4 C 1.42895 * 113.99696 * 180.02562 * 3 2 1 5 5 C 1.53786 * 113.61068 * 209.99759 * 4 3 2 6 6 C 1.53784 * 87.08265 * 219.93379 * 5 4 3 7 7 C 1.50700 * 113.61320 * 139.98046 * 6 5 4 8 8 O 1.21283 * 119.99803 * 1.53073 * 7 6 5 9 9 N 1.34777 * 119.99675 * 181.80948 * 7 6 5 10 10 C 1.47419 * 125.65146 * 359.74383 * 9 7 6 11 11 C 1.54911 * 104.83630 * 204.09512 * 10 9 7 12 12 C 1.55156 * 101.57846 * 322.99597 * 11 10 9 13 13 H 1.09001 * 110.71751 * 277.13125 * 12 11 10 14 14 N 1.46501 * 110.71849 * 154.04308 * 12 11 10 15 15 C 1.36933 * 120.00074 * 86.45140 * 14 12 11 16 16 H 1.08001 * 120.00006 * 359.97438 * 15 14 12 17 17 C 1.38818 * 119.99795 * 179.97438 * 15 14 12 18 18 N 1.31618 * 120.00155 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99884 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47168 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47058 * 120.00108 * 19 17 15 22 22 H 1.48499 * 109.47214 * 240.00583 * 19 17 15 23 23 C 1.47028 * 125.64354 * 179.44686 * 9 7 6 24 24 C 1.53780 * 87.16967 * 25.39152 * 6 5 4 25 25 H 1.08997 * 109.47221 * 59.99733 * 1 2 3 26 26 H 1.09000 * 109.46826 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46728 * 299.99803 * 1 2 3 28 28 H 1.08998 * 109.46728 * 240.00197 * 2 1 3 29 29 H 1.08997 * 109.47221 * 120.00267 * 2 1 3 30 30 H 1.09003 * 112.85447 * 341.19193 * 4 3 2 31 31 H 1.09001 * 113.61159 * 105.38710 * 5 4 3 32 32 H 1.08996 * 113.61426 * 334.48641 * 5 4 3 33 33 H 1.08998 * 113.61442 * 270.80429 * 6 5 4 34 34 H 1.08998 * 110.36747 * 322.93640 * 10 9 7 35 35 H 1.09003 * 110.36475 * 85.25954 * 10 9 7 36 36 H 1.09001 * 110.99900 * 81.06373 * 11 10 9 37 37 H 1.08997 * 111.00782 * 204.88088 * 11 10 9 38 38 H 0.97004 * 119.99911 * 266.44366 * 14 12 11 39 39 H 0.97001 * 120.00001 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.87760 * 298.38550 * 23 9 7 41 41 H 1.08992 * 109.88468 * 59.55598 * 23 9 7 42 42 H 1.08998 * 113.61710 * 89.15660 * 24 6 5 43 43 H 1.08997 * 113.61389 * 220.06034 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9488 2.7252 0.7039 6 6 4.9911 2.8303 -0.4220 7 6 5.2301 4.2415 -0.8936 8 8 4.6427 5.1638 -0.3689 9 7 6.0922 4.4780 -1.9021 10 6 6.8689 3.4554 -2.6262 11 6 8.0929 4.2159 -3.1949 12 6 7.4622 5.5819 -3.5739 13 1 6.9829 5.5274 -4.5514 14 7 8.4722 6.6428 -3.5525 15 6 9.2355 6.8841 -4.6635 16 1 9.0931 6.2920 -5.5555 17 6 10.1922 7.8898 -4.6434 18 7 10.3660 8.6111 -3.5562 19 14 11.2338 8.2184 -6.1587 20 1 10.8460 7.2769 -7.2397 21 1 11.0152 9.6141 -6.6165 22 1 12.6679 8.0258 -5.8249 23 6 6.4093 5.7982 -2.4665 24 6 4.0059 2.0447 -1.3036 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9281 0.5456 0.3229 31 1 4.3836 2.5318 1.6846 32 1 3.2309 3.5453 0.7123 33 1 5.9153 2.2915 -0.2131 34 1 7.1937 2.6711 -1.9425 35 1 6.2756 3.0318 -3.4365 36 1 8.8640 4.3392 -2.4344 37 1 8.4920 3.7115 -4.0749 38 1 8.6003 7.1745 -2.7513 39 1 11.0347 9.3135 -3.5420 40 1 5.5101 6.2461 -2.8895 41 1 6.8181 6.4447 -1.6901 42 1 3.3036 2.6784 -1.8451 43 1 4.4865 1.3028 -1.9412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018803061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = -48.456042 kcal Electronic energy + Delta-G solvation = -22099.626565 eV Core-core repulsion = 18759.858144 eV Total energy + Delta-G solvation = -3339.768421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.50118 -38.87541 -37.34192 -36.06412 -34.12031 -31.57538 -31.22773 -29.52340 -28.18330 -25.92900 -25.81697 -23.57169 -23.11386 -22.68980 -20.52279 -19.95440 -18.89106 -17.64173 -17.36304 -16.47003 -16.02275 -15.94939 -15.46135 -15.18195 -14.60172 -14.00866 -13.77388 -13.50274 -13.26757 -13.23561 -12.90484 -12.68318 -12.59759 -12.45141 -11.93450 -11.75646 -11.70285 -11.62227 -11.31770 -11.17334 -11.05059 -10.87160 -10.85080 -10.71449 -10.33644 -10.06739 -9.79085 -9.71836 -9.51731 -8.98729 -8.38453 -7.05706 -5.83445 -3.14160 2.76572 3.09695 3.39635 3.44952 3.47624 3.51273 4.23680 4.34235 4.52211 4.53285 4.56894 4.73140 4.75959 4.89883 5.02302 5.03677 5.10521 5.26679 5.34742 5.39399 5.47182 5.54632 5.56943 5.58531 5.60442 5.74013 5.77273 5.78163 5.86776 5.96238 6.07865 6.14276 6.25988 6.37383 6.57913 6.60305 6.89749 7.02100 7.64239 7.75839 8.33315 8.36228 9.45366 9.99930 10.34582 11.38828 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.048432 B = 0.002739 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.989807 B =10219.551002 C =10460.864290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.063 3.937 5 C -0.113 4.113 6 C -0.132 4.132 7 C 0.537 3.463 8 O -0.544 6.544 9 N -0.610 5.610 10 C 0.100 3.900 11 C -0.155 4.155 12 C 0.172 3.828 13 H 0.063 0.937 14 N -0.716 5.716 15 C -0.244 4.244 16 H 0.073 0.927 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.909 3.091 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.100 3.900 24 C -0.136 4.136 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.108 -19.965 6.295 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.005 3.995 5 C -0.150 4.150 6 C -0.153 4.153 7 C 0.325 3.675 8 O -0.421 6.421 9 N -0.344 5.344 10 C -0.023 4.023 11 C -0.196 4.196 12 C 0.060 3.940 13 H 0.081 0.919 14 N -0.357 5.357 15 C -0.375 4.375 16 H 0.091 0.909 17 C -0.208 4.208 18 N -0.577 5.577 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.023 4.023 24 C -0.174 4.174 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.509 -19.278 6.458 24.977 hybrid contribution 1.040 0.094 -0.600 1.204 sum -13.469 -19.184 5.857 24.160 Atomic orbital electron populations 1.21752 0.93846 1.02142 1.03245 1.22515 0.95644 0.84117 0.99913 1.87999 1.20498 1.26088 1.94513 1.23685 0.81210 0.98023 0.96551 1.23117 0.97021 0.97958 0.96952 1.22431 0.99409 0.94167 0.99331 1.19901 0.78338 0.90541 0.78753 1.90694 1.48955 1.45832 1.56636 1.48477 1.42325 1.09458 1.34145 1.22382 0.93171 0.91255 0.95499 1.23561 0.96145 0.98700 1.01205 1.21172 0.88948 0.88631 0.95252 0.91906 1.42370 1.40044 1.37816 1.15472 1.19250 1.12315 1.13717 0.92169 0.90903 1.24789 0.99917 0.98575 0.97506 1.69677 1.36968 1.24045 1.27029 0.86094 0.80077 0.77732 0.82099 1.20483 1.21793 1.21820 1.22282 0.98904 0.84091 0.97017 1.23438 0.97521 0.99301 0.97120 0.91796 0.91218 0.91836 0.93400 0.93437 0.89281 0.90486 0.87678 0.86860 0.91408 0.91687 0.90636 0.90563 0.77950 0.93394 0.91687 0.91142 0.88747 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.05 0.41 6.50 37.16 0.24 0.65 16 3 O -0.37 -3.94 10.36 -35.23 -0.36 -4.31 16 4 C 0.06 0.58 4.31 -25.82 -0.11 0.47 16 5 C -0.11 -1.23 7.23 -25.91 -0.19 -1.42 16 6 C -0.13 -1.47 3.28 -90.96 -0.30 -1.77 16 7 C 0.54 8.44 7.37 -10.98 -0.08 8.36 16 8 O -0.54 -10.68 16.24 5.55 0.09 -10.59 16 9 N -0.61 -9.50 3.33 -170.51 -0.57 -10.06 16 10 C 0.10 1.28 6.69 -2.53 -0.02 1.26 16 11 C -0.15 -2.48 6.77 -24.58 -0.17 -2.64 16 12 C 0.17 3.28 3.57 -66.09 -0.24 3.05 16 13 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 14 N -0.72 -17.50 5.25 -51.65 -0.27 -17.77 16 15 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 19 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 C 0.10 1.81 6.63 -3.06 -0.02 1.79 16 24 C -0.14 -1.32 7.48 -25.83 -0.19 -1.51 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.61 7.87 -51.93 -0.41 0.21 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.42 7.45 -51.93 -0.39 1.03 16 33 H 0.11 1.02 7.55 -51.93 -0.39 0.63 16 34 H 0.07 0.71 7.29 -51.93 -0.38 0.33 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.39 10.18 7.53 -40.82 -0.31 9.88 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 40 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 41 H 0.07 1.41 7.70 -51.93 -0.40 1.01 16 42 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -32.21 352.00 -8.35 -40.57 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.31 Total: 6.47 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.93 Total: 0.51 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.11 Total: -54.87 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.27 Total: -14.90 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.21 -8.35 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018803061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.890 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds