Wall clock time and date at job start Tue Mar 31 2020 05:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.48527 * 2 1 4 4 O 1.42898 * 109.48146 * 239.97237 * 2 1 3 5 5 C 1.42907 * 114.09830 * 178.85780 * 4 2 1 6 6 C 1.53090 * 109.41387 * 61.15547 * 5 4 2 7 7 C 1.53309 * 109.19859 * 302.39173 * 6 5 4 8 8 C 1.53093 * 109.48319 * 120.02499 * 2 1 3 9 9 H 1.09005 * 109.52324 * 297.56299 * 8 2 1 10 10 C 1.50700 * 109.51940 * 57.68529 * 8 2 1 11 11 O 1.21279 * 120.00168 * 359.88280 * 10 8 2 12 12 N 1.34771 * 120.00035 * 179.87185 * 10 8 2 13 13 C 1.46503 * 120.00396 * 180.02562 * 12 10 8 14 14 H 1.08994 * 112.84686 * 23.80023 * 13 12 10 15 15 C 1.53780 * 113.61674 * 155.00354 * 13 12 10 16 16 C 1.53785 * 87.08174 * 89.20081 * 15 13 12 17 17 H 1.09003 * 113.60971 * 270.79629 * 16 15 13 18 18 N 1.46496 * 113.61187 * 139.98177 * 16 15 13 19 19 C 1.36945 * 119.99718 * 156.52742 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.53781 * 87.17378 * 25.38679 * 16 15 13 28 28 H 1.09002 * 109.47308 * 299.96892 * 1 2 3 29 29 H 1.08998 * 109.47045 * 59.97587 * 1 2 3 30 30 H 1.09004 * 109.46756 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.48004 * 181.14056 * 5 4 2 32 32 H 1.08997 * 109.48037 * 301.16313 * 5 4 2 33 33 H 1.08995 * 109.52330 * 62.30258 * 6 5 4 34 34 H 1.09005 * 109.52401 * 182.42664 * 6 5 4 35 35 H 1.08999 * 109.53233 * 297.13136 * 7 6 5 36 36 H 1.08994 * 109.63408 * 176.81731 * 7 6 5 37 37 H 0.97008 * 120.00326 * 0.02562 * 12 10 8 38 38 H 1.08995 * 113.61248 * 334.64713 * 15 13 12 39 39 H 1.08999 * 113.60760 * 203.74798 * 15 13 12 40 40 H 0.96996 * 120.00499 * 336.52472 * 18 16 15 41 41 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 42 42 H 1.09001 * 113.61154 * 89.15968 * 27 16 15 43 43 H 1.08996 * 113.61315 * 220.06045 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 8 2.0066 -0.6741 -1.1664 5 6 3.4307 -0.7092 -1.2790 6 6 4.0176 -1.4599 -0.0808 7 6 3.5712 -0.7707 1.2138 8 6 2.0406 -0.7222 1.2496 9 1 1.7139 -0.1848 2.1399 10 6 1.4927 -2.1257 1.2792 11 8 0.7635 -2.5110 0.3900 12 7 1.8133 -2.9530 2.2937 13 6 1.2811 -4.3177 2.3223 14 1 1.0049 -4.6850 1.3340 15 6 2.1498 -5.3010 3.1244 16 6 1.3259 -4.8991 4.3592 17 1 1.7342 -4.0433 4.8968 18 7 1.0034 -6.0238 5.2408 19 6 0.7201 -5.7990 6.5616 20 1 0.7349 -4.7927 6.9534 21 6 0.4140 -6.8645 7.3969 22 7 0.3965 -8.0910 6.9195 23 14 0.0284 -6.5580 9.1988 24 1 -0.2641 -7.8503 9.8692 25 1 1.1959 -5.9138 9.8522 26 1 -1.1540 -5.6661 9.3071 27 6 0.1912 -4.5323 3.3882 28 1 -0.3634 0.5134 0.8903 29 1 -0.3633 0.5142 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 3.7100 -1.2202 -2.2005 32 1 3.8192 0.3090 -1.2960 33 1 3.6614 -2.4900 -0.0864 34 1 5.1059 -1.4505 -0.1426 35 1 3.9689 0.2437 1.2424 36 1 3.9383 -1.3321 2.0729 37 1 2.3963 -2.6449 3.0051 38 1 3.1980 -5.0085 3.1848 39 1 2.0160 -6.3419 2.8301 40 1 0.9904 -6.9276 4.8890 41 1 0.1829 -8.8357 7.5033 42 1 -0.4790 -5.3628 3.1663 43 1 -0.3394 -3.6202 3.6614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020104056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:57 Heat of formation + Delta-G solvation = -55.933790 kcal Electronic energy + Delta-G solvation = -22929.602838 eV Core-core repulsion = 19589.510157 eV Total energy + Delta-G solvation = -3340.092681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80002 -38.99556 -37.48047 -34.32418 -33.78369 -32.77551 -32.32245 -29.88099 -28.05790 -25.18170 -25.12129 -24.39463 -22.78149 -22.24165 -21.68938 -19.72416 -18.91544 -17.23491 -16.99334 -16.40916 -16.06184 -15.74804 -15.19348 -15.06064 -14.72149 -14.17206 -14.01330 -13.62257 -13.61073 -12.96634 -12.77636 -12.61767 -12.48267 -12.21813 -12.06805 -11.84843 -11.80480 -11.57869 -11.25313 -10.94311 -10.86769 -10.76936 -10.58965 -10.29916 -10.25099 -9.91577 -9.69738 -9.55029 -9.30942 -8.90841 -8.70175 -6.99152 -5.80868 -3.10025 2.75160 3.22322 3.41220 3.45815 3.46899 3.68940 4.36389 4.44851 4.50724 4.56531 4.67712 4.84440 5.02944 5.08594 5.15788 5.19208 5.23418 5.35511 5.40865 5.44925 5.46601 5.50837 5.56427 5.63142 5.82263 5.86557 5.88595 5.91588 5.96266 6.15552 6.24924 6.32671 6.40013 6.57763 6.65390 6.72337 7.10508 7.16923 7.65338 7.67239 8.37601 8.41009 9.48672 10.06309 10.40647 11.41434 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034132 B = 0.003257 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.159123 B = 8593.877323 C = 8698.858810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 H 0.059 0.941 4 O -0.361 6.361 5 C 0.059 3.941 6 C -0.160 4.160 7 C -0.113 4.113 8 C -0.145 4.145 9 H 0.104 0.896 10 C 0.522 3.478 11 O -0.520 6.520 12 N -0.709 5.709 13 C 0.117 3.883 14 H 0.095 0.905 15 C -0.159 4.159 16 C 0.167 3.833 17 H 0.071 0.929 18 N -0.713 5.713 19 C -0.246 4.246 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.291 1.291 25 H -0.286 1.286 26 H -0.285 1.285 27 C -0.175 4.175 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.397 0.603 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.085 0.915 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.518 17.258 -13.938 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.054 3.946 3 H 0.077 0.923 4 O -0.280 6.280 5 C -0.018 4.018 6 C -0.197 4.197 7 C -0.151 4.151 8 C -0.167 4.167 9 H 0.122 0.878 10 C 0.308 3.692 11 O -0.396 6.396 12 N -0.360 5.360 13 C 0.011 3.989 14 H 0.113 0.887 15 C -0.198 4.198 16 C 0.055 3.945 17 H 0.089 0.911 18 N -0.351 5.351 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.218 4.218 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.231 0.769 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.826 16.910 -14.509 23.303 hybrid contribution 0.310 0.083 1.599 1.630 sum 7.136 16.993 -12.910 22.502 Atomic orbital electron populations 1.22111 0.92629 1.05948 1.01436 1.21795 0.95834 0.93346 0.83656 0.92304 1.88079 1.19951 1.77843 1.42110 1.22542 0.81913 0.99024 0.98276 1.22243 1.01168 1.01079 0.95260 1.21617 0.92912 1.01855 0.98728 1.22129 0.97372 0.95344 1.01813 0.87786 1.20217 0.80728 0.86736 0.81517 1.90631 1.36185 1.76082 1.36707 1.45750 1.51181 1.13391 1.25669 1.21822 0.96409 0.81177 0.99443 0.88737 1.23826 0.98565 0.99376 0.98064 1.21609 0.92538 0.91891 0.88488 0.91065 1.42397 1.81674 1.04265 1.06753 1.19241 1.39669 0.93094 0.85710 0.91202 1.24766 1.02430 0.95283 0.98324 1.69650 1.55267 0.97926 1.35159 0.86264 0.78178 0.76714 0.85000 1.21649 1.21233 1.21216 1.24319 0.98472 1.01338 0.97634 0.91916 0.92305 0.88273 0.89011 0.93497 0.90779 0.90614 0.90724 0.90716 0.76862 0.91887 0.89125 0.78013 0.93357 0.89677 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.21 37.16 0.34 -1.50 16 2 C 0.11 1.18 2.84 -26.68 -0.08 1.11 16 3 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 4 O -0.36 -4.53 9.47 -51.89 -0.49 -5.02 16 5 C 0.06 0.55 6.84 37.20 0.25 0.80 16 6 C -0.16 -1.39 5.88 -26.52 -0.16 -1.55 16 7 C -0.11 -0.89 5.47 -26.48 -0.14 -1.03 16 8 C -0.14 -1.42 2.59 -91.63 -0.24 -1.66 16 9 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 10 C 0.52 6.92 5.63 -10.99 -0.06 6.86 16 11 O -0.52 -8.80 12.50 -11.10 -0.14 -8.93 16 12 N -0.71 -9.01 5.14 -52.93 -0.27 -9.28 16 13 C 0.12 1.77 4.33 -67.02 -0.29 1.48 16 14 H 0.09 1.54 7.46 -51.93 -0.39 1.15 16 15 C -0.16 -2.50 7.58 -25.92 -0.20 -2.70 16 16 C 0.17 3.19 4.35 -67.12 -0.29 2.89 16 17 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 18 N -0.71 -17.61 5.41 -52.64 -0.28 -17.89 16 19 C -0.25 -6.75 9.97 -15.06 -0.15 -6.90 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 23 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 C -0.18 -3.10 7.69 -25.83 -0.20 -3.30 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 1.42 5.32 -51.93 -0.28 1.15 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.83 7.39 -51.93 -0.38 0.44 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.53 7.50 -51.93 -0.39 0.14 16 37 H 0.40 4.22 8.10 -40.82 -0.33 3.89 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 40 H 0.39 10.13 7.91 -40.82 -0.32 9.81 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -32.30 339.93 -8.79 -41.09 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -7.13 Total: 10.97 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.30 Total: -5.93 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.17 Total: -54.42 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.63 Total: -13.96 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.30 -8.79 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020104056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.842 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds