Wall clock time and date at job start Tue Mar 31 2020 05:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.48527 * 2 1 4 4 O 1.42898 * 109.48146 * 239.97237 * 2 1 3 5 5 C 1.42907 * 114.09830 * 178.85780 * 4 2 1 6 6 C 1.53090 * 109.41387 * 61.15547 * 5 4 2 7 7 C 1.53309 * 109.19859 * 302.39173 * 6 5 4 8 8 C 1.53093 * 109.48319 * 120.02499 * 2 1 3 9 9 H 1.09005 * 109.52324 * 297.56299 * 8 2 1 10 10 C 1.50700 * 109.51940 * 57.68529 * 8 2 1 11 11 O 1.21279 * 120.00168 * 359.88280 * 10 8 2 12 12 N 1.34771 * 120.00035 * 179.87185 * 10 8 2 13 13 C 1.46503 * 120.00396 * 180.02562 * 12 10 8 14 14 H 1.08994 * 112.84686 * 23.80023 * 13 12 10 15 15 C 1.53780 * 113.61674 * 155.00354 * 13 12 10 16 16 C 1.53785 * 87.08174 * 89.20081 * 15 13 12 17 17 H 1.09003 * 113.60971 * 270.79629 * 16 15 13 18 18 N 1.46496 * 113.61187 * 139.98177 * 16 15 13 19 19 C 1.36945 * 119.99718 * 156.52742 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.53781 * 87.17378 * 25.38679 * 16 15 13 28 28 H 1.09002 * 109.47308 * 299.96892 * 1 2 3 29 29 H 1.08998 * 109.47045 * 59.97587 * 1 2 3 30 30 H 1.09004 * 109.46756 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.48004 * 181.14056 * 5 4 2 32 32 H 1.08997 * 109.48037 * 301.16313 * 5 4 2 33 33 H 1.08995 * 109.52330 * 62.30258 * 6 5 4 34 34 H 1.09005 * 109.52401 * 182.42664 * 6 5 4 35 35 H 1.08999 * 109.53233 * 297.13136 * 7 6 5 36 36 H 1.08994 * 109.63408 * 176.81731 * 7 6 5 37 37 H 0.97008 * 120.00326 * 0.02562 * 12 10 8 38 38 H 1.08995 * 113.61248 * 334.64713 * 15 13 12 39 39 H 1.08999 * 113.60760 * 203.74798 * 15 13 12 40 40 H 0.96996 * 120.00499 * 336.52472 * 18 16 15 41 41 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 42 42 H 1.09001 * 113.61154 * 89.15968 * 27 16 15 43 43 H 1.08996 * 113.61315 * 220.06045 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 8 2.0066 -0.6741 -1.1664 5 6 3.4307 -0.7092 -1.2790 6 6 4.0176 -1.4599 -0.0808 7 6 3.5712 -0.7707 1.2138 8 6 2.0406 -0.7222 1.2496 9 1 1.7139 -0.1848 2.1399 10 6 1.4927 -2.1257 1.2792 11 8 0.7635 -2.5110 0.3900 12 7 1.8133 -2.9530 2.2937 13 6 1.2811 -4.3177 2.3223 14 1 1.0049 -4.6850 1.3340 15 6 2.1498 -5.3010 3.1244 16 6 1.3259 -4.8991 4.3592 17 1 1.7342 -4.0433 4.8968 18 7 1.0034 -6.0238 5.2408 19 6 0.7201 -5.7990 6.5616 20 1 0.7349 -4.7927 6.9534 21 6 0.4140 -6.8645 7.3969 22 7 0.3965 -8.0910 6.9195 23 14 0.0284 -6.5580 9.1988 24 1 -0.2641 -7.8503 9.8692 25 1 1.1959 -5.9138 9.8522 26 1 -1.1540 -5.6661 9.3071 27 6 0.1912 -4.5323 3.3882 28 1 -0.3634 0.5134 0.8903 29 1 -0.3633 0.5142 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 3.7100 -1.2202 -2.2005 32 1 3.8192 0.3090 -1.2960 33 1 3.6614 -2.4900 -0.0864 34 1 5.1059 -1.4505 -0.1426 35 1 3.9689 0.2437 1.2424 36 1 3.9383 -1.3321 2.0729 37 1 2.3963 -2.6449 3.0051 38 1 3.1980 -5.0085 3.1848 39 1 2.0160 -6.3419 2.8301 40 1 0.9904 -6.9276 4.8890 41 1 0.1829 -8.8357 7.5033 42 1 -0.4790 -5.3628 3.1663 43 1 -0.3394 -3.6202 3.6614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020104056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:56 Heat of formation + Delta-G solvation = -77.854670 kcal Electronic energy + Delta-G solvation = -22930.553399 eV Core-core repulsion = 19589.510157 eV Total energy + Delta-G solvation = -3341.043241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.75320 -40.18203 -38.62887 -35.77991 -34.95430 -33.73584 -33.49671 -31.74099 -28.88402 -26.60901 -26.46938 -25.61649 -24.11498 -23.14772 -22.76885 -20.66975 -20.33588 -19.13020 -17.98416 -17.33563 -17.09744 -16.70136 -16.60861 -16.16833 -15.76783 -15.70273 -15.29442 -15.00143 -14.61207 -14.30791 -13.79347 -13.61232 -13.40027 -13.34851 -13.32466 -13.22429 -12.92002 -12.78051 -12.63378 -12.53680 -12.21167 -11.96486 -11.82321 -11.72504 -11.60096 -11.31403 -11.19130 -10.83615 -10.54866 -10.23437 -9.92186 -8.99087 -7.94608 -5.23481 1.48029 1.50891 1.56915 1.74103 2.19665 2.56920 2.96162 3.36859 3.58441 3.70710 3.75656 3.82663 3.87575 3.95987 4.03558 4.09486 4.32287 4.32881 4.39781 4.43528 4.48577 4.68715 4.72998 4.77854 4.80962 4.86514 4.90357 4.91741 4.98735 5.11117 5.13283 5.15746 5.21461 5.26740 5.29174 5.49544 5.53762 5.78095 6.27253 6.45385 6.66272 7.33319 7.40075 8.09983 8.32380 9.28611 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034132 B = 0.003257 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.159123 B = 8593.877323 C = 8698.858810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 H 0.088 0.912 4 O -0.396 6.396 5 C 0.053 3.947 6 C -0.159 4.159 7 C -0.110 4.110 8 C -0.140 4.140 9 H 0.129 0.871 10 C 0.518 3.482 11 O -0.561 6.561 12 N -0.701 5.701 13 C 0.137 3.863 14 H 0.083 0.917 15 C -0.142 4.142 16 C 0.155 3.845 17 H 0.083 0.917 18 N -0.728 5.728 19 C -0.246 4.246 20 H 0.079 0.921 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.973 3.027 24 H -0.298 1.298 25 H -0.274 1.274 26 H -0.279 1.279 27 C -0.172 4.172 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.411 0.589 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.065 0.935 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.189 20.029 -13.383 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.106 0.894 4 O -0.315 6.315 5 C -0.024 4.024 6 C -0.196 4.196 7 C -0.148 4.148 8 C -0.161 4.161 9 H 0.147 0.853 10 C 0.306 3.694 11 O -0.439 6.439 12 N -0.353 5.353 13 C 0.030 3.970 14 H 0.101 0.899 15 C -0.181 4.181 16 C 0.046 3.954 17 H 0.101 0.899 18 N -0.366 5.366 19 C -0.377 4.377 20 H 0.097 0.903 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.802 3.198 24 H -0.224 1.224 25 H -0.200 1.200 26 H -0.206 1.206 27 C -0.214 4.214 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.248 0.752 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.530 19.751 -13.965 25.649 hybrid contribution -0.225 -0.717 1.311 1.511 sum 8.305 19.034 -12.654 24.318 Atomic orbital electron populations 1.22085 0.93833 1.03826 1.02406 1.21961 0.95099 0.94680 0.83433 0.89414 1.88039 1.21887 1.78495 1.43125 1.22727 0.80557 1.00509 0.98578 1.22231 1.02371 0.99256 0.95777 1.21685 0.91092 1.03587 0.98403 1.22194 0.98799 0.92547 1.02551 0.85308 1.20962 0.79819 0.88039 0.80556 1.90638 1.37969 1.77116 1.38205 1.45650 1.51143 1.12242 1.26245 1.21443 0.94994 0.82613 0.97923 0.89914 1.23637 0.99557 0.99213 0.95726 1.21938 0.93856 0.90893 0.88761 0.89865 1.42606 1.82141 1.05113 1.06721 1.19681 1.37797 0.93351 0.86907 0.90301 1.25586 1.03551 0.95190 1.02543 1.69814 1.57340 0.98674 1.36339 0.85220 0.78294 0.76194 0.80111 1.22431 1.20015 1.20561 1.24167 0.98404 1.00527 0.98339 0.90101 0.92232 0.91799 0.89174 0.91076 0.93919 0.88467 0.87881 0.89675 0.75241 0.89525 0.89873 0.79464 0.94041 0.91630 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.21 71.98 0.66 -2.88 16 2 C 0.11 2.00 2.84 30.62 0.09 2.09 16 3 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 4 O -0.40 -9.51 9.47 -133.05 -1.26 -10.76 16 5 C 0.05 0.86 6.84 72.01 0.49 1.36 16 6 C -0.16 -2.37 5.88 30.73 0.18 -2.19 16 7 C -0.11 -1.29 5.47 30.76 0.17 -1.13 16 8 C -0.14 -2.32 2.59 -11.45 -0.03 -2.35 16 9 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 10 C 0.52 13.09 5.63 87.66 0.49 13.58 16 11 O -0.56 -19.18 12.50 12.90 0.16 -19.02 16 12 N -0.70 -16.57 5.14 -439.76 -2.26 -18.84 16 13 C 0.14 4.06 4.33 45.58 0.20 4.26 16 14 H 0.08 2.72 7.46 -2.39 -0.02 2.70 16 15 C -0.14 -4.32 7.58 31.12 0.24 -4.08 16 16 C 0.16 5.79 4.35 45.52 0.20 5.99 16 17 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 18 N -0.73 -36.11 5.41 -320.45 -1.73 -37.84 16 19 C -0.25 -13.40 9.97 84.03 0.84 -12.56 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 22 N -0.97 -59.36 13.06 21.65 0.28 -59.07 16 23 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 C -0.17 -6.09 7.69 31.18 0.24 -5.85 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.87 5.32 -2.38 -0.01 1.86 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.04 0.91 7.39 -2.39 -0.02 0.89 16 34 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.85 7.50 -2.39 -0.02 0.83 16 37 H 0.41 7.51 8.10 -92.70 -0.75 6.76 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.08 2.70 8.11 -2.39 -0.02 2.68 16 40 H 0.37 20.05 7.91 -92.71 -0.73 19.32 16 41 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -71.59 339.93 0.97 -70.61 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -0.48 Total: 35.01 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 4.23 Total: -7.66 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -3.71 Total: -115.75 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.10 Total: -29.78 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.59 0.97 -70.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020104056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.242 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds