Wall clock time and date at job start Tue Mar 31 2020 05:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.49214 * 2 1 4 4 O 1.42900 * 109.48139 * 120.03355 * 2 1 3 5 5 C 1.42901 * 114.09876 * 181.13979 * 4 2 1 6 6 C 1.53090 * 109.41276 * 298.83750 * 5 4 2 7 7 C 1.53177 * 109.16478 * 57.61305 * 6 5 4 8 8 C 1.53095 * 109.47666 * 239.97270 * 2 1 3 9 9 H 1.09002 * 109.52170 * 62.50388 * 8 2 1 10 10 C 1.50699 * 109.52202 * 302.37562 * 8 2 1 11 11 O 1.21281 * 120.00281 * 0.13107 * 10 8 2 12 12 N 1.34781 * 119.99894 * 180.12406 * 10 8 2 13 13 C 1.46499 * 120.00286 * 180.02562 * 12 10 8 14 14 H 1.09001 * 112.84730 * 23.81107 * 13 12 10 15 15 C 1.53781 * 113.61672 * 155.00211 * 13 12 10 16 16 C 1.53774 * 87.08068 * 139.98419 * 15 13 12 17 17 H 1.09005 * 113.61207 * 219.93806 * 16 15 13 18 18 N 1.46495 * 113.61661 * 89.11833 * 16 15 13 19 19 C 1.36936 * 120.00281 * 154.99509 * 18 16 15 20 20 H 1.08003 * 119.99847 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99970 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99563 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00115 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46975 * 89.99981 * 23 21 19 25 25 H 1.48501 * 109.47176 * 209.99584 * 23 21 19 26 26 H 1.48494 * 109.46996 * 329.99788 * 23 21 19 27 27 C 1.53780 * 113.61553 * 252.50213 * 13 12 10 28 28 H 1.09000 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46982 * 300.02403 * 1 2 3 30 30 H 1.08999 * 109.47152 * 60.02389 * 1 2 3 31 31 H 1.09000 * 109.48210 * 58.82276 * 5 4 2 32 32 H 1.08998 * 109.47982 * 178.85989 * 5 4 2 33 33 H 1.09006 * 109.51905 * 177.51337 * 6 5 4 34 34 H 1.08995 * 109.52864 * 297.69959 * 6 5 4 35 35 H 1.08991 * 109.54667 * 183.15091 * 7 6 5 36 36 H 1.08999 * 109.54635 * 62.87780 * 7 6 5 37 37 H 0.97001 * 119.99631 * 0.02562 * 12 10 8 38 38 H 1.09003 * 113.61706 * 254.53601 * 15 13 12 39 39 H 1.09003 * 113.61407 * 25.43271 * 15 13 12 40 40 H 0.97000 * 119.99949 * 334.99963 * 18 16 15 41 41 H 0.97006 * 119.99433 * 180.02562 * 22 21 19 42 42 H 1.08997 * 113.61744 * 334.56318 * 27 13 12 43 43 H 1.08994 * 113.61446 * 105.47068 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 8 2.0066 -0.6743 1.1663 5 6 3.4307 -0.7094 1.2790 6 6 4.0175 -1.4602 0.0808 7 6 3.5711 -0.7709 -1.2123 8 6 2.0405 -0.7223 -1.2496 9 1 1.7147 -0.1843 -2.1399 10 6 1.4913 -2.1253 -1.2800 11 8 0.7612 -2.5101 -0.3913 12 7 1.8115 -2.9525 -2.2948 13 6 1.2773 -4.3163 -2.3246 14 1 0.3550 -4.4221 -1.7534 15 6 1.1985 -4.9163 -3.7384 16 6 1.6745 -6.2403 -3.1178 17 1 2.3918 -6.7795 -3.7367 18 7 0.5817 -7.0912 -2.6408 19 6 0.7594 -8.4458 -2.5473 20 1 1.7054 -8.8867 -2.8248 21 6 -0.2760 -9.2520 -2.0948 22 7 -0.1050 -10.5540 -2.0044 23 14 -1.9121 -8.4893 -1.6141 24 1 -2.8024 -8.4385 -2.8015 25 1 -2.5485 -9.3107 -0.5532 26 1 -1.6859 -7.1126 -1.1056 27 6 2.3263 -5.3959 -2.0101 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 3.8193 0.3088 1.2957 32 1 3.7099 -1.2205 2.2003 33 1 5.1058 -1.4499 0.1420 34 1 3.6613 -2.4903 0.0862 35 1 3.9391 -1.3327 -2.0707 36 1 3.9689 0.2435 -1.2409 37 1 2.3957 -2.6448 -3.0054 38 1 0.1854 -4.9607 -4.1381 39 1 1.9118 -4.4805 -4.4380 40 1 -0.2679 -6.6952 -2.3913 41 1 -0.8287 -11.1175 -1.6886 42 1 3.3479 -5.0913 -2.2372 43 1 2.2236 -5.8275 -1.0145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020104057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:58 Heat of formation + Delta-G solvation = -76.045949 kcal Electronic energy + Delta-G solvation = -23182.092736 eV Core-core repulsion = 19841.127926 eV Total energy + Delta-G solvation = -3340.964809 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.73456 -40.23938 -38.73274 -35.83987 -34.97857 -33.91755 -33.53925 -32.24487 -28.95409 -26.55645 -26.44974 -25.52819 -24.35152 -23.14628 -22.60149 -20.84436 -20.32879 -19.53230 -17.93618 -17.63173 -17.02356 -16.75572 -16.58997 -16.20234 -16.09359 -15.64678 -15.12180 -14.77791 -14.72459 -14.59546 -13.94407 -13.81493 -13.64054 -13.42546 -13.31335 -13.23718 -12.94752 -12.90427 -12.67638 -12.43230 -12.24288 -11.98586 -11.85603 -11.77725 -11.61107 -11.37684 -11.30182 -10.95638 -10.54149 -10.22429 -9.88304 -9.33552 -8.06971 -5.39913 1.33778 1.36728 1.42702 1.75405 2.27010 2.43451 2.95319 3.23273 3.47263 3.58500 3.67946 3.74748 3.83122 3.86506 4.01366 4.09352 4.22316 4.25362 4.38840 4.42173 4.46581 4.66886 4.74130 4.76866 4.80151 4.82012 4.84244 4.96213 4.97894 5.09846 5.10849 5.14277 5.20283 5.27093 5.28365 5.49167 5.71056 5.77461 6.18965 6.44969 6.70528 7.03388 7.44948 7.80768 7.96786 9.14409 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.004035 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.302506 B = 6938.326259 C = 7269.340569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 H 0.090 0.910 4 O -0.400 6.400 5 C 0.052 3.948 6 C -0.161 4.161 7 C -0.107 4.107 8 C -0.137 4.137 9 H 0.136 0.864 10 C 0.511 3.489 11 O -0.569 6.569 12 N -0.705 5.705 13 C 0.131 3.869 14 H 0.071 0.929 15 C -0.136 4.136 16 C 0.151 3.849 17 H 0.076 0.924 18 N -0.738 5.738 19 C -0.232 4.232 20 H 0.065 0.935 21 C -0.058 4.058 22 N -0.980 5.980 23 Si 0.947 3.053 24 H -0.271 1.271 25 H -0.295 1.295 26 H -0.265 1.265 27 C -0.171 4.171 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.036 0.964 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.415 0.585 38 H 0.069 0.931 39 H 0.128 0.872 40 H 0.363 0.637 41 H 0.258 0.742 42 H 0.104 0.896 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.528 29.269 -2.351 30.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.108 0.892 4 O -0.319 6.319 5 C -0.024 4.024 6 C -0.198 4.198 7 C -0.144 4.144 8 C -0.158 4.158 9 H 0.154 0.846 10 C 0.299 3.701 11 O -0.448 6.448 12 N -0.357 5.357 13 C 0.025 3.975 14 H 0.089 0.911 15 C -0.175 4.175 16 C 0.041 3.959 17 H 0.095 0.905 18 N -0.379 5.379 19 C -0.363 4.363 20 H 0.083 0.917 21 C -0.250 4.250 22 N -0.631 5.631 23 Si 0.775 3.225 24 H -0.197 1.197 25 H -0.222 1.222 26 H -0.191 1.191 27 C -0.213 4.213 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.253 0.747 38 H 0.088 0.912 39 H 0.146 0.854 40 H 0.196 0.804 41 H 0.067 0.933 42 H 0.122 0.878 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.975 28.694 -1.611 30.108 hybrid contribution -0.830 -0.427 0.386 1.010 sum 8.145 28.268 -1.226 29.443 Atomic orbital electron populations 1.22086 0.93957 1.03633 1.02472 1.22013 0.95066 0.94793 0.83611 0.89220 1.88053 1.21875 1.78593 1.43405 1.22716 0.80627 1.00546 0.98546 1.22217 1.02343 0.99086 0.96178 1.21655 0.91080 1.03596 0.98118 1.22187 0.98709 0.92401 1.02513 0.84581 1.21119 0.79849 0.88272 0.80886 1.90671 1.38399 1.77507 1.38202 1.45896 1.51113 1.12443 1.26253 1.22160 0.96691 0.80535 0.98084 0.91082 1.23740 1.03212 0.95104 0.95469 1.21219 0.90215 0.89991 0.94441 0.90543 1.42559 1.12960 1.03280 1.79078 1.19108 0.98835 0.82874 1.35490 0.91745 1.25399 1.01679 0.95613 1.02285 1.69863 1.33876 1.04407 1.54918 0.85531 0.80898 0.78014 0.78074 1.19703 1.22179 1.19074 1.24147 0.99700 0.97621 0.99838 0.92163 0.92534 0.89601 0.90771 0.89794 0.88456 0.94477 0.89188 0.87637 0.74709 0.91237 0.85411 0.80403 0.93260 0.87764 0.94877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 9.21 71.98 0.66 -2.94 16 2 C 0.10 1.97 2.84 30.63 0.09 2.05 16 3 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 4 O -0.40 -10.36 9.47 -133.10 -1.26 -11.62 16 5 C 0.05 0.95 6.84 72.01 0.49 1.44 16 6 C -0.16 -2.59 5.88 30.68 0.18 -2.41 16 7 C -0.11 -1.14 5.46 30.72 0.17 -0.98 16 8 C -0.14 -2.13 2.59 -11.45 -0.03 -2.16 16 9 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 10 C 0.51 12.98 5.64 87.66 0.49 13.47 16 11 O -0.57 -21.01 12.49 12.85 0.16 -20.84 16 12 N -0.70 -15.27 5.23 -440.04 -2.30 -17.58 16 13 C 0.13 3.89 4.12 45.52 0.19 4.08 16 14 H 0.07 2.72 7.46 -2.39 -0.02 2.70 16 15 C -0.14 -3.57 7.58 31.12 0.24 -3.33 16 16 C 0.15 5.51 4.56 45.52 0.21 5.72 16 17 H 0.08 2.77 8.10 -2.38 -0.02 2.75 16 18 N -0.74 -35.20 5.11 -320.46 -1.64 -36.84 16 19 C -0.23 -13.45 10.45 84.03 0.88 -12.57 16 20 H 0.06 4.02 8.06 -2.91 -0.02 3.99 16 21 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 22 N -0.98 -63.88 13.97 21.65 0.30 -63.58 16 23 Si 0.95 47.66 27.74 68.60 1.90 49.57 16 24 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 26 H -0.27 -12.75 6.52 99.48 0.65 -12.11 16 27 C -0.17 -5.63 7.68 31.12 0.24 -5.39 16 28 H 0.06 1.84 5.31 -2.39 -0.01 1.83 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.04 0.88 7.39 -2.39 -0.02 0.87 16 35 H 0.09 0.69 7.51 -2.39 -0.02 0.67 16 36 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.42 5.45 8.13 -92.71 -0.75 4.70 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.13 2.24 8.12 -2.39 -0.02 2.22 16 40 H 0.36 17.19 5.76 -92.71 -0.53 16.66 16 41 H 0.26 16.06 8.31 -92.70 -0.77 15.29 16 42 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -80.22 336.81 1.10 -79.13 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.34 Total: 27.82 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 4.27 Total: -6.07 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -3.64 Total: -117.99 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.10 Total: -32.46 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.90 Total: 49.57 kcal Total: -80.22 1.10 -79.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020104057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.079 kcal (2) G-P(sol) polarization free energy of solvation -80.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds