Wall clock time and date at job start Tue Mar 31 2020 05:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47888 * 2 1 4 4 O 1.42898 * 109.48612 * 239.96784 * 2 1 3 5 5 C 1.42897 * 114.10001 * 178.85940 * 4 2 1 6 6 C 1.53089 * 109.41656 * 61.16248 * 5 4 2 7 7 C 1.53176 * 109.16219 * 302.39053 * 6 5 4 8 8 C 1.53094 * 109.48029 * 120.02556 * 2 1 3 9 9 H 1.09004 * 109.51815 * 57.68592 * 8 2 1 10 10 C 1.50703 * 109.52264 * 297.50128 * 8 2 1 11 11 O 1.21280 * 119.99735 * 0.31270 * 10 8 2 12 12 N 1.34780 * 119.99645 * 180.31066 * 10 8 2 13 13 C 1.46507 * 119.99338 * 179.97438 * 12 10 8 14 14 H 1.09004 * 112.85029 * 25.33773 * 13 12 10 15 15 C 1.53786 * 113.60810 * 156.53017 * 13 12 10 16 16 C 1.53784 * 87.07649 * 139.98031 * 15 13 12 17 17 H 1.09004 * 113.61345 * 220.01395 * 16 15 13 18 18 N 1.46501 * 113.61394 * 89.19905 * 16 15 13 19 19 C 1.36942 * 120.00190 * 154.99638 * 18 16 15 20 20 H 1.07998 * 119.99375 * 0.02562 * 19 18 16 21 21 C 1.38805 * 120.00410 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99873 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47338 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47127 * 120.00204 * 23 21 19 26 26 H 1.48506 * 109.46987 * 239.99483 * 23 21 19 27 27 C 1.53776 * 113.61410 * 254.13639 * 13 12 10 28 28 H 1.09001 * 109.46790 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47290 * 300.02911 * 1 2 3 30 30 H 1.08997 * 109.46818 * 60.03238 * 1 2 3 31 31 H 1.09002 * 109.48425 * 301.17758 * 5 4 2 32 32 H 1.09001 * 109.49443 * 181.15303 * 5 4 2 33 33 H 1.08997 * 109.52675 * 182.48845 * 6 5 4 34 34 H 1.08995 * 109.52428 * 62.29514 * 6 5 4 35 35 H 1.08997 * 109.55040 * 176.84788 * 7 6 5 36 36 H 1.09004 * 109.54565 * 297.11436 * 7 6 5 37 37 H 0.96988 * 120.00177 * 359.97438 * 12 10 8 38 38 H 1.08995 * 113.61434 * 254.52704 * 15 13 12 39 39 H 1.08995 * 113.61892 * 25.35026 * 15 13 12 40 40 H 0.97005 * 120.00186 * 334.99859 * 18 16 15 41 41 H 0.97000 * 120.00331 * 179.97438 * 22 21 19 42 42 H 1.09005 * 113.61348 * 334.56950 * 27 13 12 43 43 H 1.08998 * 113.61408 * 105.47483 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0067 -0.6742 -1.1663 5 6 3.4308 -0.7093 -1.2789 6 6 4.0176 -1.4601 -0.0807 7 6 3.5711 -0.7709 1.2123 8 6 2.0405 -0.7222 1.2496 9 1 1.6442 -1.7374 1.2710 10 6 1.5901 0.0216 2.4805 11 8 0.9212 1.0272 2.3704 12 7 1.9307 -0.4309 3.7035 13 6 1.4933 0.2926 4.9001 14 1 0.5871 0.8753 4.7347 15 6 1.4413 -0.5820 6.1639 16 6 2.0161 0.6235 6.9264 17 1 2.7636 0.3524 7.6720 18 7 0.9910 1.5288 7.4515 19 6 1.2652 2.3180 8.5365 20 1 2.2374 2.2733 9.0048 21 6 0.2938 3.1754 9.0344 22 7 -0.8908 3.2303 8.4633 23 14 0.6681 4.2525 10.5139 24 1 2.0605 4.0049 10.9669 25 1 0.5160 5.6809 10.1376 26 1 -0.2750 3.9274 11.6141 27 6 2.6184 1.0846 5.5867 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5143 0.8897 30 1 -0.3633 0.5133 -0.8903 31 1 3.8194 0.3090 -1.2956 32 1 3.7103 -1.2201 -2.2003 33 1 5.1059 -1.4497 -0.1418 34 1 3.6614 -2.4901 -0.0862 35 1 3.9390 -1.3326 2.0709 36 1 3.9689 0.2436 1.2410 37 1 2.4654 -1.2353 3.7915 38 1 0.4295 -0.8493 6.4687 39 1 2.1134 -1.4395 6.1296 40 1 0.1180 1.5692 7.0306 41 1 -1.5698 3.8292 8.8114 42 1 3.6140 0.6844 5.3948 43 1 2.5555 2.1609 5.4261 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020104058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:01 Heat of formation + Delta-G solvation = -85.759353 kcal Electronic energy + Delta-G solvation = -22623.387599 eV Core-core repulsion = 19282.001585 eV Total energy + Delta-G solvation = -3341.386014 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65085 -40.23181 -39.03745 -35.78709 -34.96961 -33.96110 -33.57554 -31.66000 -29.01386 -26.56142 -26.44876 -25.74232 -24.44292 -23.21803 -22.05390 -21.06776 -20.21814 -19.36069 -18.34901 -17.61136 -17.06316 -16.66276 -16.38528 -16.17609 -15.86670 -15.75681 -15.43784 -15.09962 -14.64866 -14.34835 -14.06059 -13.66408 -13.49147 -13.40826 -13.27967 -13.19884 -12.96795 -12.83146 -12.58728 -12.37819 -12.12761 -11.99449 -11.96153 -11.80097 -11.70581 -11.36153 -11.31496 -10.91496 -10.70179 -10.39143 -9.95683 -9.03783 -7.96794 -5.26619 1.46729 1.47979 1.58047 1.59400 2.14541 2.54499 2.85474 3.35432 3.51751 3.63360 3.69765 3.71709 3.85252 3.90920 4.00375 4.13568 4.17190 4.30077 4.35477 4.38015 4.46777 4.59715 4.76335 4.80225 4.82005 4.82932 4.88504 4.94515 5.00166 5.06474 5.08324 5.15943 5.23151 5.29070 5.31107 5.38561 5.51191 5.70215 6.23825 6.25914 6.59895 7.30127 7.30363 8.06786 8.27700 9.26954 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034296 B = 0.003166 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.217583 B = 8841.289522 C = 9197.989873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.110 3.890 3 H 0.046 0.954 4 O -0.391 6.391 5 C 0.046 3.954 6 C -0.146 4.146 7 C -0.113 4.113 8 C -0.128 4.128 9 H 0.123 0.877 10 C 0.513 3.487 11 O -0.582 6.582 12 N -0.698 5.698 13 C 0.132 3.868 14 H 0.068 0.932 15 C -0.138 4.138 16 C 0.150 3.850 17 H 0.078 0.922 18 N -0.724 5.724 19 C -0.242 4.242 20 H 0.083 0.917 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.976 3.024 24 H -0.261 1.261 25 H -0.297 1.297 26 H -0.293 1.293 27 C -0.170 4.170 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.127 0.873 40 H 0.371 0.629 41 H 0.251 0.749 42 H 0.106 0.894 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.608 -15.009 -17.763 26.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.052 3.948 3 H 0.064 0.936 4 O -0.311 6.311 5 C -0.030 4.030 6 C -0.184 4.184 7 C -0.151 4.151 8 C -0.149 4.149 9 H 0.141 0.859 10 C 0.301 3.699 11 O -0.462 6.462 12 N -0.349 5.349 13 C 0.027 3.973 14 H 0.087 0.913 15 C -0.177 4.177 16 C 0.039 3.961 17 H 0.096 0.904 18 N -0.362 5.362 19 C -0.374 4.374 20 H 0.100 0.900 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.224 1.224 26 H -0.220 1.220 27 C -0.212 4.212 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.079 0.921 39 H 0.145 0.855 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.124 0.876 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 12.115 -14.315 -17.802 25.857 hybrid contribution -0.369 1.022 0.849 1.379 sum 11.745 -13.293 -16.954 24.537 Atomic orbital electron populations 1.21909 0.93076 1.02849 1.02997 1.21661 0.95334 0.94051 0.83796 0.93629 1.87938 1.22758 1.77939 1.42426 1.22872 0.79866 1.00269 1.00018 1.22168 1.02542 1.00455 0.93191 1.21659 0.90899 1.02022 1.00544 1.21977 0.99472 1.01672 0.91794 0.85903 1.20996 0.78698 0.84555 0.85660 1.90691 1.40600 1.27714 1.87189 1.45869 1.54622 1.29946 1.04478 1.22175 0.97352 0.94625 0.83197 0.91341 1.23730 1.02428 0.98099 0.93454 1.21293 0.91543 0.90351 0.92924 0.90374 1.42417 1.13004 1.46360 1.34385 1.19752 0.98045 1.14636 1.04940 0.89955 1.25642 0.96086 1.02400 1.03013 1.69846 1.05310 1.42588 1.44509 0.85036 0.77885 0.77835 0.78779 1.18547 1.22445 1.21968 1.24193 0.99040 0.98962 0.98992 0.91443 0.91021 0.91969 0.93374 0.86832 0.88263 0.89809 0.88429 0.92297 0.74509 0.92121 0.85534 0.79702 0.94059 0.87582 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.28 71.98 0.67 -3.06 16 2 C 0.11 2.53 2.40 30.63 0.07 2.61 16 3 H 0.05 1.22 8.04 -2.39 -0.02 1.20 16 4 O -0.39 -8.15 10.41 -148.98 -1.55 -9.70 16 5 C 0.05 0.63 6.84 72.01 0.49 1.12 16 6 C -0.15 -1.46 6.14 30.68 0.19 -1.28 16 7 C -0.11 -1.52 5.18 30.71 0.16 -1.37 16 8 C -0.13 -2.43 2.23 -11.45 -0.03 -2.46 16 9 H 0.12 1.90 8.14 -2.38 -0.02 1.89 16 10 C 0.51 13.84 6.88 87.66 0.60 14.44 16 11 O -0.58 -21.84 13.43 -3.03 -0.04 -21.88 16 12 N -0.70 -16.20 5.27 -440.01 -2.32 -18.52 16 13 C 0.13 4.18 4.09 45.52 0.19 4.37 16 14 H 0.07 2.84 7.50 -2.39 -0.02 2.82 16 15 C -0.14 -3.95 7.58 31.12 0.24 -3.72 16 16 C 0.15 5.60 4.57 45.58 0.21 5.81 16 17 H 0.08 2.77 8.10 -2.38 -0.02 2.75 16 18 N -0.72 -36.81 5.31 -320.16 -1.70 -38.51 16 19 C -0.24 -13.48 9.97 84.03 0.84 -12.64 16 20 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 21 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 22 N -0.97 -61.01 13.06 21.65 0.28 -60.73 16 23 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 27 C -0.17 -5.70 7.69 31.18 0.24 -5.46 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 2.16 5.73 -2.39 -0.01 2.14 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.87 7.67 -2.39 -0.02 0.86 16 36 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.42 6.07 8.20 -92.72 -0.76 5.31 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 39 H 0.13 2.45 8.11 -2.39 -0.02 2.43 16 40 H 0.37 20.72 7.90 -92.70 -0.73 19.99 16 41 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 43 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -73.68 343.64 0.55 -73.13 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.49 Total: 33.40 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 4.33 Total: -5.79 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -3.74 Total: -117.75 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.59 Total: -31.59 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.68 0.55 -73.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020104058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.627 kcal (2) G-P(sol) polarization free energy of solvation -73.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds