Wall clock time and date at job start Tue Mar 31 2020 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.48299 * 2 1 4 4 O 1.42904 * 109.49082 * 120.03510 * 2 1 3 5 5 C 1.42905 * 114.09872 * 181.14819 * 4 2 1 6 6 C 1.53095 * 109.41338 * 298.84089 * 5 4 2 7 7 C 1.53190 * 109.21470 * 57.57430 * 6 5 4 8 8 C 1.53098 * 109.48114 * 239.98301 * 2 1 3 9 9 H 1.08999 * 109.51836 * 302.36146 * 8 2 1 10 10 C 1.50694 * 109.52231 * 62.49023 * 8 2 1 11 11 O 1.21283 * 120.00363 * 359.87461 * 10 8 2 12 12 N 1.34784 * 119.99988 * 179.87580 * 10 8 2 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 8 14 14 H 1.09002 * 112.85200 * 336.19079 * 13 12 10 15 15 C 1.53786 * 113.61753 * 107.50245 * 13 12 10 16 16 C 1.53781 * 87.07959 * 89.11345 * 15 13 12 17 17 H 1.09004 * 113.68812 * 270.87369 * 16 15 13 18 18 N 1.46499 * 113.61496 * 139.98397 * 16 15 13 19 19 C 1.36933 * 120.00111 * 107.49590 * 18 16 15 20 20 H 1.07997 * 120.00249 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00290 * 180.02562 * 19 18 16 22 22 N 1.31628 * 119.99614 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00325 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47206 * 90.00214 * 23 21 19 25 25 H 1.48503 * 109.46909 * 209.99954 * 23 21 19 26 26 H 1.48496 * 109.47184 * 330.00053 * 23 21 19 27 27 C 1.53779 * 87.08411 * 25.43382 * 16 15 13 28 28 H 1.09001 * 109.46910 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47253 * 300.02117 * 1 2 3 30 30 H 1.09005 * 109.47103 * 60.01970 * 1 2 3 31 31 H 1.09005 * 109.48150 * 58.81902 * 5 4 2 32 32 H 1.08994 * 109.47908 * 178.84437 * 5 4 2 33 33 H 1.08998 * 109.52221 * 177.51361 * 6 5 4 34 34 H 1.09000 * 109.51890 * 297.64205 * 6 5 4 35 35 H 1.08999 * 109.59628 * 183.21649 * 7 6 5 36 36 H 1.08998 * 109.49058 * 62.94884 * 7 6 5 37 37 H 0.97000 * 119.99339 * 0.02562 * 12 10 8 38 38 H 1.09001 * 113.61511 * 203.66141 * 15 13 12 39 39 H 1.08999 * 113.61048 * 334.56152 * 15 13 12 40 40 H 0.97006 * 119.99718 * 287.50531 * 18 16 15 41 41 H 0.97003 * 119.99843 * 180.02562 * 22 21 19 42 42 H 1.09003 * 113.61795 * 220.01939 * 27 16 15 43 43 H 1.08997 * 113.61636 * 89.11348 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0068 -0.6743 1.1662 5 6 3.4310 -0.7092 1.2788 6 6 4.0179 -1.4597 0.0804 7 6 3.5711 -0.7717 -1.2133 8 6 2.0406 -0.7220 -1.2498 9 1 1.6436 -1.7369 -1.2717 10 6 1.5900 0.0218 -2.4805 11 8 0.9238 1.0292 -2.3703 12 7 1.9274 -0.4326 -3.7037 13 6 1.4844 0.2872 -4.9003 14 1 0.5926 0.8893 -4.7261 15 6 2.6137 1.0479 -5.6151 16 6 2.8660 -0.2393 -6.4178 17 1 3.5734 -0.9196 -5.9435 18 7 3.1674 0.0001 -7.8313 19 6 4.4422 -0.1763 -8.2990 20 1 5.2255 -0.4923 -7.6259 21 6 4.7280 0.0510 -9.6382 22 7 3.7735 0.4367 -10.4585 23 14 6.4669 -0.1903 -10.2763 24 1 6.6357 -1.5926 -10.7350 25 1 6.7101 0.7347 -11.4124 26 1 7.4372 0.0951 -9.1891 27 6 1.3943 -0.5988 -6.1540 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5141 0.8898 30 1 -0.3633 0.5136 -0.8902 31 1 3.8194 0.3092 1.2956 32 1 3.7103 -1.2200 2.2002 33 1 5.1061 -1.4492 0.1415 34 1 3.6626 -2.4901 0.0865 35 1 3.9382 -1.3340 -2.0719 36 1 3.9696 0.2423 -1.2424 37 1 2.4599 -1.2385 -3.7918 38 1 2.2618 1.8805 -6.2243 39 1 3.4393 1.3220 -4.9584 40 1 2.4638 0.2837 -8.4359 41 1 3.9730 0.5952 -11.3944 42 1 1.2355 -1.6542 -5.9324 43 1 0.7090 -0.2164 -6.9105 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020104059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:03 Heat of formation + Delta-G solvation = -84.390028 kcal Electronic energy + Delta-G solvation = -22611.091047 eV Core-core repulsion = 19269.764412 eV Total energy + Delta-G solvation = -3341.326636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69412 -40.25323 -38.98225 -35.80602 -34.96261 -33.83094 -33.56440 -31.77194 -28.96371 -26.63530 -26.46496 -25.78003 -24.07470 -23.24452 -22.23001 -21.05019 -20.37650 -19.17238 -18.46106 -17.38396 -17.14711 -16.63731 -16.32268 -16.16756 -15.86149 -15.76450 -15.40125 -15.28379 -14.62368 -14.38510 -13.92679 -13.66119 -13.53054 -13.36042 -13.33125 -13.21118 -12.95470 -12.79688 -12.58887 -12.36744 -12.16617 -11.99056 -11.96017 -11.83562 -11.72927 -11.34377 -11.19450 -10.84476 -10.76364 -10.41179 -10.00736 -8.99160 -7.94961 -5.23542 1.48200 1.49411 1.56386 1.57743 2.07385 2.56631 2.85469 3.36724 3.52494 3.66249 3.69837 3.73506 3.86290 3.96004 3.99512 4.14346 4.17850 4.32139 4.33011 4.38485 4.48269 4.59686 4.72701 4.78160 4.82567 4.88440 4.91107 4.91812 4.96326 5.07286 5.09329 5.13225 5.20632 5.23851 5.30204 5.38436 5.50992 5.71749 6.24670 6.27128 6.54418 7.22977 7.33335 8.10053 8.32184 9.28409 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027602 B = 0.003314 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.176144 B = 8446.961847 C = 9217.894628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.110 3.890 3 H 0.049 0.951 4 O -0.391 6.391 5 C 0.049 3.951 6 C -0.148 4.148 7 C -0.116 4.116 8 C -0.129 4.129 9 H 0.122 0.878 10 C 0.522 3.478 11 O -0.573 6.573 12 N -0.695 5.695 13 C 0.135 3.865 14 H 0.090 0.910 15 C -0.172 4.172 16 C 0.153 3.847 17 H 0.084 0.916 18 N -0.728 5.728 19 C -0.244 4.244 20 H 0.079 0.921 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.972 3.028 24 H -0.286 1.286 25 H -0.299 1.299 26 H -0.269 1.269 27 C -0.143 4.143 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.413 0.587 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.086 0.914 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 -5.975 23.505 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.067 0.933 4 O -0.310 6.310 5 C -0.027 4.027 6 C -0.185 4.185 7 C -0.154 4.154 8 C -0.151 4.151 9 H 0.140 0.860 10 C 0.310 3.690 11 O -0.453 6.453 12 N -0.346 5.346 13 C 0.028 3.972 14 H 0.108 0.892 15 C -0.214 4.214 16 C 0.043 3.957 17 H 0.102 0.898 18 N -0.365 5.365 19 C -0.375 4.375 20 H 0.097 0.903 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.213 1.213 25 H -0.226 1.226 26 H -0.194 1.194 27 C -0.183 4.183 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.131 0.869 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.250 0.750 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.105 0.895 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.530 -5.398 23.698 24.436 hybrid contribution 0.957 0.201 -1.357 1.673 sum -1.573 -5.197 22.341 22.991 Atomic orbital electron populations 1.21914 0.92610 1.02894 1.03268 1.21704 0.95625 0.94075 0.83444 0.93266 1.87941 1.22552 1.78027 1.42503 1.22835 0.79959 1.00245 0.99707 1.22172 1.02432 1.00513 0.93412 1.21656 0.91475 1.01995 1.00279 1.21980 0.98993 1.01903 0.92187 0.86004 1.20811 0.78582 0.84539 0.85060 1.90650 1.40529 1.27060 1.87044 1.45610 1.54773 1.29786 1.04407 1.21494 0.97257 0.94523 0.83919 0.89170 1.24138 0.98385 0.99793 0.99065 1.21968 0.94862 0.94756 0.84076 0.89806 1.42613 1.08049 1.80302 1.05584 1.19710 0.88119 1.36741 0.92979 0.90290 1.25578 1.01366 1.03126 0.96834 1.69820 1.33328 1.54811 1.04170 0.85162 0.80040 0.77066 0.77634 1.21261 1.22567 1.19356 1.23675 0.98054 1.00524 0.96028 0.91598 0.91868 0.90406 0.93195 0.86902 0.88666 0.89961 0.89233 0.92158 0.74984 0.91375 0.92625 0.79421 0.94062 0.89498 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.28 71.98 0.67 -2.47 16 2 C 0.11 2.28 2.41 30.63 0.07 2.35 16 3 H 0.05 1.17 8.04 -2.38 -0.02 1.15 16 4 O -0.39 -7.67 10.41 -148.98 -1.55 -9.22 16 5 C 0.05 0.67 6.84 72.01 0.49 1.16 16 6 C -0.15 -1.67 6.13 30.69 0.19 -1.48 16 7 C -0.12 -1.70 5.19 30.72 0.16 -1.54 16 8 C -0.13 -2.32 2.23 -11.45 -0.03 -2.35 16 9 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 10 C 0.52 12.57 6.87 87.65 0.60 13.17 16 11 O -0.57 -18.07 13.42 -3.04 -0.04 -18.11 16 12 N -0.69 -15.58 5.17 -440.03 -2.27 -17.85 16 13 C 0.13 3.75 4.32 45.52 0.20 3.95 16 14 H 0.09 2.72 7.47 -2.39 -0.02 2.70 16 15 C -0.17 -5.82 7.68 31.12 0.24 -5.58 16 16 C 0.15 5.56 4.36 45.52 0.20 5.76 16 17 H 0.08 2.85 8.10 -2.38 -0.02 2.83 16 18 N -0.73 -35.49 5.40 -320.45 -1.73 -37.22 16 19 C -0.24 -13.13 9.97 84.03 0.84 -12.29 16 20 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 22 N -0.97 -58.84 13.06 21.65 0.28 -58.56 16 23 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C -0.14 -4.18 7.58 31.12 0.24 -3.95 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.92 5.73 -2.38 -0.01 1.91 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 1.09 7.68 -2.39 -0.02 1.07 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.41 7.18 8.20 -92.71 -0.76 6.42 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 40 H 0.37 19.74 7.92 -92.70 -0.73 19.01 16 41 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.09 2.65 8.12 -2.39 -0.02 2.64 16 Total: -1.00 -67.33 343.64 0.56 -66.78 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: -0.49 Total: 34.08 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 4.33 Total: -7.15 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -3.72 Total: -113.63 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -1.59 Total: -27.33 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -67.33 0.56 -66.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020104059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.615 kcal (2) G-P(sol) polarization free energy of solvation -67.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds