Wall clock time and date at job start Tue Mar 31 2020 05:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.32779 * 2 1 4 4 O 1.44415 * 110.37805 * 237.62781 * 2 1 3 5 5 C 1.44642 * 105.37338 * 200.73667 * 4 2 1 6 6 C 1.54477 * 104.69773 * 40.34325 * 5 4 2 7 7 C 1.54478 * 110.37213 * 122.24458 * 2 1 3 8 8 C 1.53005 * 110.51234 * 24.17068 * 7 2 1 9 9 C 1.50705 * 110.63103 * 261.51662 * 7 2 1 10 10 O 1.21274 * 119.99544 * 3.83307 * 9 7 2 11 11 N 1.34774 * 120.00223 * 183.83468 * 9 7 2 12 12 C 1.46495 * 120.00241 * 179.97438 * 11 9 7 13 13 H 1.09005 * 112.85075 * 334.67180 * 12 11 9 14 14 C 1.53782 * 113.61394 * 105.86339 * 12 11 9 15 15 C 1.54051 * 86.98537 * 89.16461 * 14 12 11 16 16 H 1.09001 * 113.68929 * 270.87803 * 15 14 12 17 17 N 1.46501 * 113.62130 * 139.97687 * 15 14 12 18 18 C 1.36942 * 119.99867 * 107.50586 * 17 15 14 19 19 H 1.07997 * 119.99753 * 359.97438 * 18 17 15 20 20 C 1.38803 * 119.99880 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99981 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47100 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47265 * 119.99855 * 22 20 18 25 25 H 1.48507 * 109.47160 * 240.00105 * 22 20 18 26 26 C 1.53779 * 113.61714 * 203.47093 * 12 11 9 27 27 H 1.09000 * 109.47342 * 297.74836 * 1 2 3 28 28 H 1.09003 * 109.47259 * 57.75736 * 1 2 3 29 29 H 1.09006 * 109.46692 * 177.75301 * 1 2 3 30 30 H 1.09006 * 110.33613 * 281.58701 * 5 4 2 31 31 H 1.09000 * 110.51087 * 159.18466 * 5 4 2 32 32 H 1.09002 * 110.51371 * 217.47805 * 6 5 4 33 33 H 1.08994 * 110.51108 * 94.90453 * 6 5 4 34 34 H 1.08996 * 109.47255 * 176.09948 * 8 7 2 35 35 H 1.09005 * 109.46950 * 296.09248 * 8 7 2 36 36 H 1.08995 * 109.46944 * 56.08929 * 8 7 2 37 37 H 0.97008 * 120.00046 * 359.97438 * 11 9 7 38 38 H 1.08996 * 113.61216 * 203.66561 * 14 12 11 39 39 H 1.08996 * 113.61462 * 334.57217 * 14 12 11 40 40 H 0.96993 * 120.00157 * 287.50541 * 17 15 14 41 41 H 0.96998 * 120.00145 * 179.97438 * 21 20 18 42 42 H 1.09004 * 113.61152 * 25.43583 * 26 12 11 43 43 H 1.09001 * 113.61422 * 156.33302 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 8 2.0328 -0.7248 -1.1434 5 6 3.3890 -1.0912 -0.7990 6 6 3.3178 -1.5049 0.6877 7 6 2.0677 -0.7726 1.2248 8 6 1.0287 -1.7799 1.7218 9 6 2.4476 0.1802 2.3288 10 8 2.2450 1.3690 2.2002 11 7 3.0125 -0.2886 3.4591 12 6 3.3823 0.6377 4.5320 13 1 3.5717 1.6489 4.1717 14 6 2.4394 0.5827 5.7456 15 6 3.3585 -0.5186 6.3072 16 1 3.0779 -1.5246 5.9951 17 7 3.5863 -0.4135 7.7506 18 6 2.9990 -1.3097 8.6035 19 1 2.3677 -2.0936 8.2120 20 6 3.2144 -1.2098 9.9710 21 7 3.9834 -0.2541 10.4481 22 14 2.4127 -2.4318 11.1345 23 1 1.6021 -3.4003 10.3534 24 1 3.4642 -3.1603 11.8886 25 1 1.5340 -1.7057 12.0864 26 6 4.4838 0.0979 5.4596 27 1 -0.3634 0.4785 0.9095 28 1 -0.3634 0.5483 -0.8692 29 1 -0.3633 -1.0270 -0.0403 30 1 4.0554 -0.2376 -0.9239 31 1 3.7253 -1.9287 -1.4102 32 1 4.2109 -1.1758 1.2189 33 1 3.1966 -2.5842 0.7783 34 1 1.4504 -2.3627 2.5407 35 1 0.1449 -1.2470 2.0726 36 1 0.7506 -2.4473 0.9062 37 1 3.1743 -1.2396 3.5621 38 1 2.4391 1.4963 6.3400 39 1 1.4356 0.2340 5.5031 40 1 4.1530 0.2907 8.1022 41 1 4.1336 -0.1841 11.4039 42 1 5.1294 -0.6419 4.9863 43 1 5.0414 0.8793 5.9760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020424958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:39 Heat of formation + Delta-G solvation = -55.409687 kcal Electronic energy + Delta-G solvation = -22827.098707 eV Core-core repulsion = 19487.028753 eV Total energy + Delta-G solvation = -3340.069954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.03001 -39.21422 -37.70951 -34.34127 -33.89787 -32.57821 -31.63792 -29.86904 -28.04752 -25.85867 -25.17169 -24.59792 -22.89773 -22.42112 -21.67494 -19.49595 -19.01778 -17.56738 -17.08786 -16.32022 -15.93563 -15.65854 -15.22733 -15.01510 -14.63533 -14.50646 -14.05158 -13.80886 -13.51362 -12.90712 -12.85277 -12.71273 -12.47916 -12.14804 -12.06065 -11.89876 -11.81157 -11.69544 -11.50476 -11.08501 -10.97165 -10.94767 -10.80764 -10.36543 -10.22833 -10.01442 -9.94767 -9.67529 -9.59582 -8.95901 -8.83039 -7.02273 -5.83798 -3.13076 2.55443 3.07460 3.38839 3.44506 3.46828 3.60913 4.14911 4.34194 4.46021 4.54150 4.69744 4.87297 4.88187 4.99645 5.16829 5.17017 5.24515 5.29967 5.33200 5.39924 5.44732 5.46720 5.52751 5.61089 5.69409 5.80174 5.82381 5.84523 5.89491 6.02447 6.09423 6.20220 6.27773 6.45618 6.56942 6.59438 6.65058 7.03068 7.52461 7.63991 8.19788 8.34504 9.45911 10.02943 10.37232 11.38546 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031409 B = 0.003295 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.242356 B = 8496.734682 C = 8706.022659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.090 3.910 3 H 0.087 0.913 4 O -0.371 6.371 5 C 0.047 3.953 6 C -0.147 4.147 7 C -0.112 4.112 8 C -0.136 4.136 9 C 0.529 3.471 10 O -0.539 6.539 11 N -0.702 5.702 12 C 0.114 3.886 13 H 0.095 0.905 14 C -0.175 4.175 15 C 0.167 3.833 16 H 0.073 0.927 17 N -0.712 5.712 18 C -0.246 4.246 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.159 4.159 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.400 0.600 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 -2.791 -21.650 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.105 0.895 4 O -0.290 6.290 5 C -0.030 4.030 6 C -0.185 4.185 7 C -0.116 4.116 8 C -0.193 4.193 9 C 0.314 3.686 10 O -0.416 6.416 11 N -0.352 5.352 12 C 0.009 3.991 13 H 0.113 0.887 14 C -0.218 4.218 15 C 0.055 3.945 16 H 0.091 0.909 17 N -0.350 5.350 18 C -0.377 4.377 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.199 4.199 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.235 0.765 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.405 -2.133 -21.792 22.028 hybrid contribution 0.035 -0.794 1.191 1.432 sum -2.370 -2.927 -20.601 20.942 Atomic orbital electron populations 1.21871 0.92832 1.02881 1.02722 1.22898 0.95659 0.95752 0.82454 0.89505 1.89153 1.26936 1.74733 1.38203 1.23394 0.85007 1.00092 0.94505 1.23095 0.97022 1.01567 0.96793 1.22166 0.97544 0.96429 0.95448 1.21903 0.98048 0.97785 1.01594 1.20158 0.76936 0.88800 0.82706 1.90685 1.54014 1.16614 1.80322 1.45697 1.62067 1.10995 1.16427 1.21845 0.97588 0.93497 0.86163 0.88735 1.24341 0.98751 1.02752 0.95934 1.21660 0.92304 0.95414 0.85126 0.90899 1.42411 1.57552 1.35564 0.99479 1.19330 1.23084 1.07243 0.88016 0.91067 1.24772 1.00270 0.98826 0.96952 1.69667 1.41668 1.33969 1.12602 0.86121 0.78528 0.80406 0.81137 1.20522 1.21802 1.21792 1.23852 0.97344 1.01170 0.97494 0.90801 0.91854 0.91446 0.92102 0.88741 0.89923 0.89368 0.91744 0.91323 0.90854 0.76527 0.89591 0.92435 0.78000 0.93438 0.91793 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.40 37.16 0.31 -1.10 16 2 C 0.09 0.99 3.17 -25.96 -0.08 0.91 16 3 H 0.09 1.11 6.97 -51.93 -0.36 0.75 16 4 O -0.37 -4.10 11.35 -35.23 -0.40 -4.50 16 5 C 0.05 0.40 7.65 37.93 0.29 0.69 16 6 C -0.15 -1.19 6.30 -25.16 -0.16 -1.35 16 7 C -0.11 -1.13 0.80 -154.09 -0.12 -1.25 16 8 C -0.14 -1.17 7.00 37.16 0.26 -0.91 16 9 C 0.53 6.88 6.34 -10.98 -0.07 6.81 16 10 O -0.54 -8.99 15.11 5.56 0.08 -8.90 16 11 N -0.70 -8.64 5.08 -53.02 -0.27 -8.91 16 12 C 0.11 1.68 4.29 -67.12 -0.29 1.39 16 13 H 0.09 1.47 7.50 -51.93 -0.39 1.08 16 14 C -0.18 -3.03 7.70 -25.78 -0.20 -3.23 16 15 C 0.17 3.12 4.37 -66.98 -0.29 2.83 16 16 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 17 N -0.71 -17.32 5.40 -52.50 -0.28 -17.60 16 18 C -0.25 -6.66 9.97 -15.06 -0.15 -6.81 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 26 C -0.16 -2.43 7.57 -25.92 -0.20 -2.62 16 27 H 0.07 0.74 7.76 -51.93 -0.40 0.33 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.58 6.61 -51.93 -0.34 0.24 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.66 7.68 -51.93 -0.40 0.26 16 33 H 0.09 0.58 7.73 -51.93 -0.40 0.18 16 34 H 0.06 0.51 7.76 -51.93 -0.40 0.10 16 35 H 0.07 0.63 6.96 -51.93 -0.36 0.26 16 36 H 0.07 0.56 7.53 -51.93 -0.39 0.17 16 37 H 0.40 4.12 8.28 -40.82 -0.34 3.78 16 38 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.39 9.99 7.92 -40.82 -0.32 9.66 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.45 8.12 -51.93 -0.42 1.03 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -31.71 343.86 -7.82 -39.52 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -7.04 Total: 10.31 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -0.79 Total: -5.07 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.17 Total: -53.49 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.32 Total: -13.41 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.71 -7.82 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020424958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.886 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds