Wall clock time and date at job start Tue Mar 31 2020 05:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.32779 * 2 1 4 4 O 1.44415 * 110.37805 * 237.62781 * 2 1 3 5 5 C 1.44642 * 105.37338 * 200.73667 * 4 2 1 6 6 C 1.54477 * 104.69773 * 40.34325 * 5 4 2 7 7 C 1.54478 * 110.37213 * 122.24458 * 2 1 3 8 8 C 1.53005 * 110.51234 * 24.17068 * 7 2 1 9 9 C 1.50705 * 110.63103 * 261.51662 * 7 2 1 10 10 O 1.21274 * 119.99544 * 3.83307 * 9 7 2 11 11 N 1.34774 * 120.00223 * 183.83468 * 9 7 2 12 12 C 1.46495 * 120.00241 * 179.97438 * 11 9 7 13 13 H 1.09005 * 112.85075 * 334.67180 * 12 11 9 14 14 C 1.53782 * 113.61394 * 105.86339 * 12 11 9 15 15 C 1.54051 * 86.98537 * 89.16461 * 14 12 11 16 16 H 1.09001 * 113.68929 * 270.87803 * 15 14 12 17 17 N 1.46501 * 113.62130 * 139.97687 * 15 14 12 18 18 C 1.36942 * 119.99867 * 107.50586 * 17 15 14 19 19 H 1.07997 * 119.99753 * 359.97438 * 18 17 15 20 20 C 1.38803 * 119.99880 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99981 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47100 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47265 * 119.99855 * 22 20 18 25 25 H 1.48507 * 109.47160 * 240.00105 * 22 20 18 26 26 C 1.53779 * 113.61714 * 203.47093 * 12 11 9 27 27 H 1.09000 * 109.47342 * 297.74836 * 1 2 3 28 28 H 1.09003 * 109.47259 * 57.75736 * 1 2 3 29 29 H 1.09006 * 109.46692 * 177.75301 * 1 2 3 30 30 H 1.09006 * 110.33613 * 281.58701 * 5 4 2 31 31 H 1.09000 * 110.51087 * 159.18466 * 5 4 2 32 32 H 1.09002 * 110.51371 * 217.47805 * 6 5 4 33 33 H 1.08994 * 110.51108 * 94.90453 * 6 5 4 34 34 H 1.08996 * 109.47255 * 176.09948 * 8 7 2 35 35 H 1.09005 * 109.46950 * 296.09248 * 8 7 2 36 36 H 1.08995 * 109.46944 * 56.08929 * 8 7 2 37 37 H 0.97008 * 120.00046 * 359.97438 * 11 9 7 38 38 H 1.08996 * 113.61216 * 203.66561 * 14 12 11 39 39 H 1.08996 * 113.61462 * 334.57217 * 14 12 11 40 40 H 0.96993 * 120.00157 * 287.50541 * 17 15 14 41 41 H 0.96998 * 120.00145 * 179.97438 * 21 20 18 42 42 H 1.09004 * 113.61152 * 25.43583 * 26 12 11 43 43 H 1.09001 * 113.61422 * 156.33302 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 8 2.0328 -0.7248 -1.1434 5 6 3.3890 -1.0912 -0.7990 6 6 3.3178 -1.5049 0.6877 7 6 2.0677 -0.7726 1.2248 8 6 1.0287 -1.7799 1.7218 9 6 2.4476 0.1802 2.3288 10 8 2.2450 1.3690 2.2002 11 7 3.0125 -0.2886 3.4591 12 6 3.3823 0.6377 4.5320 13 1 3.5717 1.6489 4.1717 14 6 2.4394 0.5827 5.7456 15 6 3.3585 -0.5186 6.3072 16 1 3.0779 -1.5246 5.9951 17 7 3.5863 -0.4135 7.7506 18 6 2.9990 -1.3097 8.6035 19 1 2.3677 -2.0936 8.2120 20 6 3.2144 -1.2098 9.9710 21 7 3.9834 -0.2541 10.4481 22 14 2.4127 -2.4318 11.1345 23 1 1.6021 -3.4003 10.3534 24 1 3.4642 -3.1603 11.8886 25 1 1.5340 -1.7057 12.0864 26 6 4.4838 0.0979 5.4596 27 1 -0.3634 0.4785 0.9095 28 1 -0.3634 0.5483 -0.8692 29 1 -0.3633 -1.0270 -0.0403 30 1 4.0554 -0.2376 -0.9239 31 1 3.7253 -1.9287 -1.4102 32 1 4.2109 -1.1758 1.2189 33 1 3.1966 -2.5842 0.7783 34 1 1.4504 -2.3627 2.5407 35 1 0.1449 -1.2470 2.0726 36 1 0.7506 -2.4473 0.9062 37 1 3.1743 -1.2396 3.5621 38 1 2.4391 1.4963 6.3400 39 1 1.4356 0.2340 5.5031 40 1 4.1530 0.2907 8.1022 41 1 4.1336 -0.1841 11.4039 42 1 5.1294 -0.6419 4.9863 43 1 5.0414 0.8793 5.9760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020424958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:39 Heat of formation + Delta-G solvation = -77.621881 kcal Electronic energy + Delta-G solvation = -22828.061900 eV Core-core repulsion = 19487.028753 eV Total energy + Delta-G solvation = -3341.033147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.97180 -40.35335 -38.90861 -35.80966 -35.05882 -33.88634 -32.49747 -31.65949 -28.77449 -26.83740 -26.53297 -26.20179 -24.22144 -23.34618 -22.77841 -20.44916 -20.40046 -19.15709 -18.34891 -17.46952 -16.77450 -16.74363 -16.45308 -16.19611 -15.91615 -15.50056 -15.40520 -15.24131 -14.69251 -14.24503 -13.77275 -13.63005 -13.48211 -13.36815 -13.32315 -13.18467 -12.85165 -12.80301 -12.60088 -12.59420 -12.19905 -12.10371 -11.84991 -11.82938 -11.74951 -11.65370 -11.21706 -10.90019 -10.85416 -10.62726 -10.05380 -8.99124 -7.94981 -5.23563 1.48361 1.49026 1.52229 1.58729 2.04126 2.56677 2.84653 3.36700 3.40583 3.57728 3.66512 3.69374 3.82992 3.92566 3.95636 4.15997 4.23875 4.31349 4.32312 4.38311 4.52399 4.64230 4.65056 4.70395 4.78806 4.88292 4.90434 4.90986 4.98901 5.02742 5.07162 5.11898 5.14555 5.19514 5.24841 5.30266 5.51278 5.68903 5.82350 6.27255 6.50929 7.17799 7.33529 8.09999 8.32039 9.28543 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031409 B = 0.003295 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.242356 B = 8496.734682 C = 8706.022659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.061 0.939 4 O -0.384 6.384 5 C 0.040 3.960 6 C -0.142 4.142 7 C -0.106 4.106 8 C -0.135 4.135 9 C 0.528 3.472 10 O -0.579 6.579 11 N -0.691 5.691 12 C 0.133 3.867 13 H 0.087 0.913 14 C -0.173 4.173 15 C 0.154 3.846 16 H 0.085 0.915 17 N -0.728 5.728 18 C -0.242 4.242 19 H 0.080 0.920 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.971 3.029 23 H -0.263 1.263 24 H -0.294 1.294 25 H -0.297 1.297 26 C -0.141 4.141 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.414 0.586 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.374 0.626 41 H 0.250 0.750 42 H 0.088 0.912 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 -5.017 -23.112 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.079 0.921 4 O -0.303 6.303 5 C -0.036 4.036 6 C -0.180 4.180 7 C -0.110 4.110 8 C -0.192 4.192 9 C 0.315 3.685 10 O -0.459 6.459 11 N -0.342 5.342 12 C 0.027 3.973 13 H 0.106 0.894 14 C -0.215 4.215 15 C 0.044 3.956 16 H 0.103 0.897 17 N -0.365 5.365 18 C -0.374 4.374 19 H 0.098 0.902 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.221 1.221 25 H -0.225 1.225 26 C -0.181 4.181 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.251 0.749 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.589 -4.404 -23.319 23.872 hybrid contribution 0.080 -0.058 1.528 1.532 sum -2.509 -4.462 -21.790 22.383 Atomic orbital electron populations 1.21855 0.92072 1.03714 1.02435 1.22829 0.96355 0.94746 0.83178 0.92116 1.89141 1.28245 1.74595 1.38343 1.23610 0.83838 1.00879 0.95317 1.23140 0.95919 1.02708 0.96184 1.22142 0.99017 0.96030 0.93785 1.21939 0.97265 0.97486 1.02532 1.20720 0.75897 0.88712 0.83136 1.90676 1.55531 1.18618 1.81077 1.45568 1.61691 1.11360 1.15600 1.21507 0.96074 0.93832 0.85884 0.89449 1.24192 0.98934 1.01346 0.97021 1.22009 0.94415 0.96480 0.82655 0.89742 1.42618 1.57411 1.34887 1.01592 1.19746 1.21978 1.07087 0.88590 0.90245 1.25566 1.01687 1.00915 0.98719 1.69819 1.43813 1.36101 1.12387 0.85107 0.77460 0.78452 0.78950 1.18757 1.22081 1.22467 1.23659 0.96824 1.01167 0.96444 0.91542 0.91706 0.90029 0.92496 0.86362 0.89614 0.86949 0.90516 0.92105 0.89344 0.74892 0.91386 0.92609 0.79419 0.94073 0.89301 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.40 71.98 0.60 -2.04 16 2 C 0.09 1.84 3.17 31.10 0.10 1.94 16 3 H 0.06 1.59 6.97 -2.38 -0.02 1.58 16 4 O -0.38 -7.84 11.35 -148.98 -1.69 -9.54 16 5 C 0.04 0.58 7.65 72.48 0.55 1.14 16 6 C -0.14 -1.85 6.30 31.61 0.20 -1.66 16 7 C -0.11 -1.92 0.80 -51.91 -0.04 -1.96 16 8 C -0.14 -1.94 7.00 71.98 0.50 -1.44 16 9 C 0.53 13.03 6.34 87.66 0.56 13.59 16 10 O -0.58 -19.25 15.11 -3.01 -0.05 -19.29 16 11 N -0.69 -15.52 5.08 -440.05 -2.24 -17.76 16 12 C 0.13 3.72 4.29 45.52 0.20 3.92 16 13 H 0.09 2.66 7.50 -2.38 -0.02 2.64 16 14 C -0.17 -5.86 7.70 31.21 0.24 -5.62 16 15 C 0.15 5.55 4.37 45.61 0.20 5.75 16 16 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 17 N -0.73 -35.25 5.40 -320.02 -1.73 -36.98 16 18 C -0.24 -12.99 9.97 84.03 0.84 -12.15 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 21 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 22 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 26 C -0.14 -4.07 7.57 31.12 0.24 -3.83 16 27 H 0.07 1.30 7.76 -2.39 -0.02 1.28 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.24 6.61 -2.38 -0.02 1.23 16 30 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.09 7.68 -2.39 -0.02 1.07 16 33 H 0.11 0.97 7.73 -2.39 -0.02 0.95 16 34 H 0.08 0.92 7.76 -2.39 -0.02 0.90 16 35 H 0.06 0.98 6.96 -2.38 -0.02 0.96 16 36 H 0.09 1.04 7.53 -2.39 -0.02 1.02 16 37 H 0.41 7.14 8.28 -92.70 -0.77 6.37 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.37 19.63 7.92 -92.71 -0.73 18.90 16 41 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.09 2.63 8.12 -2.39 -0.02 2.61 16 Total: -1.00 -68.71 343.86 0.77 -67.94 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.49 Total: 33.04 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 4.65 Total: -6.21 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -3.68 Total: -113.10 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.74 Total: -28.83 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -68.71 0.77 -67.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020424958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.684 kcal (2) G-P(sol) polarization free energy of solvation -68.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds