Wall clock time and date at job start Tue Mar 31 2020 05:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.86992 * 2 1 4 4 O 1.43746 * 109.88056 * 120.99953 * 2 1 3 5 5 C 1.44380 * 106.97859 * 146.08596 * 4 2 1 6 6 C 1.55000 * 103.48992 * 319.94655 * 5 4 2 7 7 C 1.54099 * 110.00319 * 238.90792 * 2 1 3 8 8 C 1.53006 * 110.48521 * 119.80219 * 7 2 1 9 9 C 1.50692 * 110.48943 * 357.15056 * 7 2 1 10 10 O 1.21285 * 119.99738 * 112.72813 * 9 7 2 11 11 N 1.34777 * 120.00120 * 292.72899 * 9 7 2 12 12 C 1.46497 * 120.00172 * 184.93500 * 11 9 7 13 13 H 1.09009 * 112.84920 * 334.66742 * 12 11 9 14 14 C 1.53785 * 113.61557 * 105.86086 * 12 11 9 15 15 C 1.54050 * 86.97956 * 89.16404 * 14 12 11 16 16 H 1.09001 * 113.61303 * 270.87913 * 15 14 12 17 17 N 1.46507 * 113.69168 * 139.99268 * 15 14 12 18 18 C 1.36938 * 119.99923 * 107.46717 * 17 15 14 19 19 H 1.07994 * 120.00027 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99920 * 179.97438 * 18 17 15 21 21 N 1.31626 * 119.99801 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46826 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47119 * 119.99838 * 22 20 18 25 25 H 1.48496 * 109.47056 * 240.00061 * 22 20 18 26 26 C 1.53780 * 87.08209 * 25.43424 * 15 14 12 27 27 H 1.08998 * 109.47346 * 306.39197 * 1 2 3 28 28 H 1.08995 * 109.47423 * 66.39469 * 1 2 3 29 29 H 1.09001 * 109.46797 * 186.39979 * 1 2 3 30 30 H 1.09008 * 110.61328 * 78.43931 * 5 4 2 31 31 H 1.08999 * 110.62145 * 201.43906 * 5 4 2 32 32 H 1.08994 * 110.90925 * 155.22014 * 6 5 4 33 33 H 1.08998 * 110.90016 * 278.78441 * 6 5 4 34 34 H 1.08998 * 109.47005 * 59.99624 * 8 7 2 35 35 H 1.08999 * 109.46378 * 180.02562 * 8 7 2 36 36 H 1.08997 * 109.46800 * 299.99456 * 8 7 2 37 37 H 0.96996 * 119.99684 * 4.93847 * 11 9 7 38 38 H 1.08995 * 113.61151 * 203.66191 * 14 12 11 39 39 H 1.08996 * 113.61139 * 334.57482 * 14 12 11 40 40 H 0.96997 * 119.99817 * 287.45807 * 17 15 14 41 41 H 0.96995 * 119.99595 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.61253 * 220.02191 * 26 15 14 43 43 H 1.08995 * 113.68980 * 89.12675 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6962 1.1587 5 6 3.2398 -1.3601 0.7677 6 6 2.9244 -1.8888 -0.6548 7 6 2.0571 -0.7478 -1.2400 8 6 2.9096 0.1833 -2.1045 9 6 0.9127 -1.3129 -2.0412 10 8 0.6704 -0.8735 -3.1454 11 7 0.1586 -2.3065 -1.5308 12 6 -0.8840 -2.9296 -2.3498 13 1 -1.2562 -2.2706 -3.1344 14 6 -0.5158 -4.3363 -2.8502 15 6 -1.1417 -4.8742 -1.5494 16 1 -0.4364 -4.9423 -0.7212 17 7 -1.9218 -6.1004 -1.7346 18 6 -1.4336 -7.2973 -1.2827 19 1 -0.4733 -7.3374 -0.7902 20 6 -2.1729 -8.4590 -1.4577 21 7 -3.3436 -8.4099 -2.0575 22 14 -1.5067 -10.0919 -0.8419 23 1 -0.1810 -9.8780 -0.2079 24 1 -2.4454 -10.6648 0.1560 25 1 -1.3643 -11.0306 -1.9836 26 6 -1.9980 -3.5970 -1.5261 27 1 -0.3634 0.6097 0.8272 28 1 -0.3634 0.4115 -0.9416 29 1 -0.3633 -1.0213 0.1146 30 1 4.0690 -0.6530 0.7392 31 1 3.4613 -2.1859 1.4439 32 1 3.8390 -2.0182 -1.2333 33 1 2.3613 -2.8209 -0.6072 34 1 3.7571 0.5450 -1.5222 35 1 3.2730 -0.3616 -2.9758 36 1 2.3057 1.0296 -2.4315 37 1 0.3062 -2.6090 -0.6211 38 1 -1.0543 -4.6346 -3.7497 39 1 0.5583 -4.5067 -2.9225 40 1 -2.7842 -6.0643 -2.1772 41 1 -3.8600 -9.2218 -2.1801 42 1 -2.1195 -3.1710 -0.5302 43 1 -2.9412 -3.6923 -2.0638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020424959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:42 Heat of formation + Delta-G solvation = -48.839461 kcal Electronic energy + Delta-G solvation = -23237.511037 eV Core-core repulsion = 19897.725989 eV Total energy + Delta-G solvation = -3339.785048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21205 -39.12089 -37.79114 -34.13440 -33.82573 -32.55095 -31.77782 -29.87962 -28.39073 -25.36828 -25.15135 -24.39763 -23.03507 -22.46786 -21.84964 -19.68567 -18.96685 -17.31439 -17.07655 -16.46071 -16.04763 -15.76925 -15.18038 -15.03859 -14.83043 -14.19994 -13.85199 -13.55477 -13.31298 -13.00555 -12.90829 -12.62160 -12.56195 -12.36772 -12.07267 -11.95897 -11.87096 -11.63083 -11.48345 -11.16208 -10.93544 -10.87597 -10.79507 -10.32582 -10.20623 -10.04124 -9.93138 -9.67673 -9.57591 -8.92622 -8.74359 -6.99909 -5.81801 -3.10836 2.54567 3.12773 3.40293 3.45906 3.48220 3.55553 4.15117 4.29875 4.39754 4.56014 4.69199 4.80813 4.87928 5.04218 5.05284 5.17958 5.20733 5.31292 5.36475 5.43094 5.47514 5.52569 5.54678 5.63404 5.68428 5.72835 5.84896 5.89923 5.94039 5.99291 6.13697 6.24652 6.30608 6.49560 6.56943 6.60576 6.68000 7.06156 7.57108 7.66046 8.24394 8.36588 9.47986 10.05236 10.39650 11.40606 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.003884 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.725964 B = 7207.797922 C = 7652.584018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 H 0.079 0.921 4 O -0.369 6.369 5 C 0.048 3.952 6 C -0.149 4.149 7 C -0.115 4.115 8 C -0.123 4.123 9 C 0.535 3.465 10 O -0.540 6.540 11 N -0.705 5.705 12 C 0.114 3.886 13 H 0.095 0.905 14 C -0.176 4.176 15 C 0.167 3.833 16 H 0.073 0.927 17 N -0.712 5.712 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.159 4.159 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.402 0.598 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.064 0.936 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.189 18.071 4.191 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.030 3.970 3 H 0.096 0.904 4 O -0.289 6.289 5 C -0.029 4.029 6 C -0.187 4.187 7 C -0.119 4.119 8 C -0.180 4.180 9 C 0.321 3.679 10 O -0.417 6.417 11 N -0.356 5.356 12 C 0.009 3.991 13 H 0.113 0.887 14 C -0.218 4.218 15 C 0.055 3.945 16 H 0.091 0.909 17 N -0.350 5.350 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.199 4.199 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.238 0.762 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.983 18.176 3.684 22.080 hybrid contribution 0.236 -1.147 0.308 1.211 sum 12.219 17.029 3.992 21.336 Atomic orbital electron populations 1.22266 0.93206 1.04170 1.02812 1.22771 0.95545 0.95608 0.83032 0.90361 1.88926 1.39493 1.67817 1.32622 1.23579 0.87722 0.96612 0.94948 1.23365 1.00684 0.97965 0.96703 1.22325 0.95396 0.97353 0.96779 1.21637 0.98487 0.98903 0.99011 1.19979 0.82547 0.79163 0.86228 1.90690 1.70330 1.59985 1.20669 1.45926 1.35901 1.36695 1.17120 1.21839 0.88648 0.94199 0.94432 0.88665 1.24350 1.00986 0.94410 1.02091 1.21656 0.92789 0.85603 0.94443 0.90937 1.42405 1.21475 1.01995 1.69084 1.19332 1.01922 0.85318 1.31032 0.91087 1.24765 0.96777 0.97976 1.01278 1.69671 1.12902 1.27531 1.47829 0.86125 0.77937 0.84163 0.78000 1.20537 1.21808 1.21816 1.23844 0.98167 0.98201 0.99651 0.91435 0.90908 0.90577 0.91865 0.88329 0.89146 0.89486 0.91879 0.91462 0.91382 0.76164 0.89599 0.92527 0.78007 0.93463 0.91751 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 8.36 37.16 0.31 -1.39 16 2 C 0.09 0.86 3.72 -26.16 -0.10 0.76 16 3 H 0.08 0.68 7.69 -51.93 -0.40 0.28 16 4 O -0.37 -3.85 11.19 -35.23 -0.39 -4.24 16 5 C 0.05 0.38 7.72 38.21 0.29 0.67 16 6 C -0.15 -1.29 6.11 -24.72 -0.15 -1.45 16 7 C -0.12 -1.16 0.87 -154.13 -0.13 -1.29 16 8 C -0.12 -1.12 7.59 37.16 0.28 -0.83 16 9 C 0.53 7.09 4.75 -10.99 -0.05 7.04 16 10 O -0.54 -9.03 15.73 5.55 0.09 -8.94 16 11 N -0.70 -9.06 3.42 -53.02 -0.18 -9.24 16 12 C 0.11 1.71 4.33 -67.12 -0.29 1.42 16 13 H 0.10 1.50 7.45 -51.92 -0.39 1.12 16 14 C -0.18 -3.07 7.70 -25.77 -0.20 -3.26 16 15 C 0.17 3.18 4.37 -66.97 -0.29 2.89 16 16 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 17 N -0.71 -17.47 5.41 -52.50 -0.28 -17.75 16 18 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 22 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 C -0.16 -2.49 7.57 -25.92 -0.20 -2.69 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.79 7.33 -51.93 -0.38 0.41 16 29 H 0.08 0.82 5.65 -51.93 -0.29 0.53 16 30 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.67 7.86 -51.93 -0.41 0.27 16 33 H 0.09 0.83 6.72 -51.93 -0.35 0.48 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.40 4.69 6.70 -40.82 -0.27 4.42 16 38 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.39 10.07 7.93 -40.82 -0.32 9.75 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -31.57 341.15 -7.71 -39.28 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.01 Total: 11.21 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.77 Total: -5.41 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.26 Total: -54.12 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.31 Total: -13.19 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.57 -7.71 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020424959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.562 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds