Wall clock time and date at job start Tue Mar 31 2020 05:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.86992 * 2 1 4 4 O 1.43746 * 109.88056 * 120.99953 * 2 1 3 5 5 C 1.44380 * 106.97859 * 146.08596 * 4 2 1 6 6 C 1.55000 * 103.48992 * 319.94655 * 5 4 2 7 7 C 1.54099 * 110.00319 * 238.90792 * 2 1 3 8 8 C 1.53006 * 110.48521 * 119.80219 * 7 2 1 9 9 C 1.50692 * 110.48943 * 357.15056 * 7 2 1 10 10 O 1.21285 * 119.99738 * 112.72813 * 9 7 2 11 11 N 1.34777 * 120.00120 * 292.72899 * 9 7 2 12 12 C 1.46497 * 120.00172 * 184.93500 * 11 9 7 13 13 H 1.09009 * 112.84920 * 334.66742 * 12 11 9 14 14 C 1.53785 * 113.61557 * 105.86086 * 12 11 9 15 15 C 1.54050 * 86.97956 * 89.16404 * 14 12 11 16 16 H 1.09001 * 113.61303 * 270.87913 * 15 14 12 17 17 N 1.46507 * 113.69168 * 139.99268 * 15 14 12 18 18 C 1.36938 * 119.99923 * 107.46717 * 17 15 14 19 19 H 1.07994 * 120.00027 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99920 * 179.97438 * 18 17 15 21 21 N 1.31626 * 119.99801 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46826 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47119 * 119.99838 * 22 20 18 25 25 H 1.48496 * 109.47056 * 240.00061 * 22 20 18 26 26 C 1.53780 * 87.08209 * 25.43424 * 15 14 12 27 27 H 1.08998 * 109.47346 * 306.39197 * 1 2 3 28 28 H 1.08995 * 109.47423 * 66.39469 * 1 2 3 29 29 H 1.09001 * 109.46797 * 186.39979 * 1 2 3 30 30 H 1.09008 * 110.61328 * 78.43931 * 5 4 2 31 31 H 1.08999 * 110.62145 * 201.43906 * 5 4 2 32 32 H 1.08994 * 110.90925 * 155.22014 * 6 5 4 33 33 H 1.08998 * 110.90016 * 278.78441 * 6 5 4 34 34 H 1.08998 * 109.47005 * 59.99624 * 8 7 2 35 35 H 1.08999 * 109.46378 * 180.02562 * 8 7 2 36 36 H 1.08997 * 109.46800 * 299.99456 * 8 7 2 37 37 H 0.96996 * 119.99684 * 4.93847 * 11 9 7 38 38 H 1.08995 * 113.61151 * 203.66191 * 14 12 11 39 39 H 1.08996 * 113.61139 * 334.57482 * 14 12 11 40 40 H 0.96997 * 119.99817 * 287.45807 * 17 15 14 41 41 H 0.96995 * 119.99595 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.61253 * 220.02191 * 26 15 14 43 43 H 1.08995 * 113.68980 * 89.12675 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6962 1.1587 5 6 3.2398 -1.3601 0.7677 6 6 2.9244 -1.8888 -0.6548 7 6 2.0571 -0.7478 -1.2400 8 6 2.9096 0.1833 -2.1045 9 6 0.9127 -1.3129 -2.0412 10 8 0.6704 -0.8735 -3.1454 11 7 0.1586 -2.3065 -1.5308 12 6 -0.8840 -2.9296 -2.3498 13 1 -1.2562 -2.2706 -3.1344 14 6 -0.5158 -4.3363 -2.8502 15 6 -1.1417 -4.8742 -1.5494 16 1 -0.4364 -4.9423 -0.7212 17 7 -1.9218 -6.1004 -1.7346 18 6 -1.4336 -7.2973 -1.2827 19 1 -0.4733 -7.3374 -0.7902 20 6 -2.1729 -8.4590 -1.4577 21 7 -3.3436 -8.4099 -2.0575 22 14 -1.5067 -10.0919 -0.8419 23 1 -0.1810 -9.8780 -0.2079 24 1 -2.4454 -10.6648 0.1560 25 1 -1.3643 -11.0306 -1.9836 26 6 -1.9980 -3.5970 -1.5261 27 1 -0.3634 0.6097 0.8272 28 1 -0.3634 0.4115 -0.9416 29 1 -0.3633 -1.0213 0.1146 30 1 4.0690 -0.6530 0.7392 31 1 3.4613 -2.1859 1.4439 32 1 3.8390 -2.0182 -1.2333 33 1 2.3613 -2.8209 -0.6072 34 1 3.7571 0.5450 -1.5222 35 1 3.2730 -0.3616 -2.9758 36 1 2.3057 1.0296 -2.4315 37 1 0.3062 -2.6090 -0.6211 38 1 -1.0543 -4.6346 -3.7497 39 1 0.5583 -4.5067 -2.9225 40 1 -2.7842 -6.0643 -2.1772 41 1 -3.8600 -9.2218 -2.1801 42 1 -2.1195 -3.1710 -0.5302 43 1 -2.9412 -3.6923 -2.0638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020424959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:41 Heat of formation + Delta-G solvation = -70.098768 kcal Electronic energy + Delta-G solvation = -23238.432910 eV Core-core repulsion = 19897.725989 eV Total energy + Delta-G solvation = -3340.706920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.14840 -40.26157 -38.99825 -35.80414 -34.78574 -33.93230 -32.56056 -31.73672 -29.12094 -26.72791 -26.55167 -25.67001 -24.31186 -23.24581 -23.10236 -20.68005 -20.39704 -19.12809 -18.19056 -17.33080 -16.96116 -16.77741 -16.64957 -16.09478 -16.01725 -15.60105 -15.48318 -14.87317 -14.31604 -14.05718 -13.90405 -13.65873 -13.48650 -13.38800 -13.32788 -13.23108 -13.12572 -12.84693 -12.73681 -12.57794 -12.23332 -12.10649 -11.88244 -11.83503 -11.75209 -11.60742 -11.21373 -10.86116 -10.85034 -10.64325 -9.97834 -8.99443 -7.95251 -5.23835 1.48120 1.48292 1.50156 1.58333 2.07330 2.56362 2.86070 3.36353 3.39528 3.44019 3.64844 3.67494 3.82110 3.94515 4.00079 4.12215 4.20492 4.28889 4.30166 4.31487 4.49738 4.60583 4.70292 4.72179 4.84697 4.87267 4.89443 4.92081 4.94108 4.98109 5.03087 5.10990 5.17437 5.20303 5.22334 5.26131 5.50677 5.68873 5.88907 6.26879 6.50029 7.17792 7.33223 8.09236 8.31967 9.28296 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024055 B = 0.003884 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.725964 B = 7207.797922 C = 7652.584018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 H 0.094 0.906 4 O -0.386 6.386 5 C 0.048 3.952 6 C -0.148 4.148 7 C -0.111 4.111 8 C -0.121 4.121 9 C 0.534 3.466 10 O -0.577 6.577 11 N -0.697 5.697 12 C 0.134 3.866 13 H 0.090 0.910 14 C -0.171 4.171 15 C 0.155 3.845 16 H 0.080 0.920 17 N -0.727 5.727 18 C -0.243 4.243 19 H 0.078 0.922 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.296 1.296 26 C -0.143 4.143 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.410 0.590 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.083 0.917 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.181 19.059 5.615 24.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.034 3.966 3 H 0.111 0.889 4 O -0.305 6.305 5 C -0.028 4.028 6 C -0.186 4.186 7 C -0.115 4.115 8 C -0.179 4.179 9 C 0.322 3.678 10 O -0.456 6.456 11 N -0.349 5.349 12 C 0.027 3.973 13 H 0.108 0.892 14 C -0.213 4.213 15 C 0.045 3.955 16 H 0.098 0.902 17 N -0.364 5.364 18 C -0.375 4.375 19 H 0.096 0.904 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.221 1.221 25 H -0.223 1.223 26 C -0.183 4.183 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.248 0.752 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.029 19.206 5.145 24.334 hybrid contribution -0.338 -1.372 -0.143 1.421 sum 13.691 17.833 5.002 23.032 Atomic orbital electron populations 1.22244 0.93909 1.03729 1.02580 1.22778 0.95057 0.96221 0.82580 0.88857 1.88912 1.40638 1.68139 1.32850 1.23752 0.87394 0.97326 0.94335 1.23394 1.00831 0.96862 0.97517 1.22343 0.94355 0.98096 0.96676 1.21654 0.99051 0.98225 0.98920 1.20593 0.82814 0.78478 0.85927 1.90677 1.71378 1.61086 1.22466 1.45850 1.35334 1.36515 1.17202 1.21508 0.88679 0.92859 0.94232 0.89154 1.24184 1.00533 0.96010 1.00582 1.21976 0.93441 0.84819 0.95301 0.90192 1.42595 1.21558 1.03061 1.69187 1.19738 1.01813 0.86402 1.29557 0.90381 1.25556 0.97329 1.01366 1.02474 1.69822 1.14361 1.27954 1.49943 0.85107 0.77848 0.79934 0.77087 1.18839 1.22080 1.22323 1.23664 0.97727 0.96042 1.00834 0.90526 0.92002 0.91356 0.89835 0.87241 0.87691 0.90501 0.89080 0.92429 0.92207 0.75167 0.91143 0.92548 0.79382 0.94050 0.89823 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 8.36 71.98 0.60 -2.53 16 2 C 0.09 1.56 3.72 30.96 0.12 1.67 16 3 H 0.09 1.34 7.69 -2.39 -0.02 1.32 16 4 O -0.39 -6.97 11.19 -148.98 -1.67 -8.64 16 5 C 0.05 0.60 7.72 72.67 0.56 1.16 16 6 C -0.15 -2.18 6.11 31.90 0.19 -1.99 16 7 C -0.11 -2.02 0.87 -51.94 -0.05 -2.06 16 8 C -0.12 -1.94 7.59 71.98 0.55 -1.39 16 9 C 0.53 13.56 4.75 87.65 0.42 13.98 16 10 O -0.58 -19.04 15.73 -3.04 -0.05 -19.08 16 11 N -0.70 -17.06 3.42 -440.03 -1.50 -18.56 16 12 C 0.13 3.88 4.33 45.52 0.20 4.08 16 13 H 0.09 2.81 7.45 -2.38 -0.02 2.80 16 14 C -0.17 -5.91 7.70 31.21 0.24 -5.67 16 15 C 0.15 5.77 4.37 45.61 0.20 5.97 16 16 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 17 N -0.73 -35.84 5.41 -320.00 -1.73 -37.57 16 18 C -0.24 -13.24 9.97 84.03 0.84 -12.41 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 22 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 26 C -0.14 -4.36 7.57 31.12 0.24 -4.12 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.29 7.33 -2.39 -0.02 1.27 16 29 H 0.07 1.36 5.65 -2.39 -0.01 1.35 16 30 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.25 7.86 -2.39 -0.02 1.23 16 33 H 0.08 1.30 6.72 -2.39 -0.02 1.28 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.41 8.87 6.70 -92.71 -0.62 8.24 16 38 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.37 19.93 7.93 -92.71 -0.73 19.20 16 41 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.09 2.79 8.12 -2.39 -0.02 2.77 16 Total: -1.00 -67.70 341.15 1.58 -66.12 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: -0.34 Total: 36.02 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 4.57 Total: -7.10 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -2.95 Total: -114.91 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -1.71 Total: -27.72 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -67.70 1.58 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020424959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.980 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds