Wall clock time and date at job start Tue Mar 31 2020 05:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.99161 * 2 1 4 4 O 1.43742 * 109.88178 * 238.90957 * 2 1 3 5 5 C 1.44379 * 106.97387 * 267.09320 * 4 2 1 6 6 C 1.54999 * 103.49118 * 319.93600 * 5 4 2 7 7 C 1.54107 * 109.87918 * 121.07546 * 2 1 3 8 8 C 1.52996 * 110.48933 * 236.07437 * 7 2 1 9 9 C 1.50702 * 110.48579 * 358.58727 * 7 2 1 10 10 O 1.21285 * 120.00025 * 110.29308 * 9 7 2 11 11 N 1.34778 * 120.00146 * 290.30030 * 9 7 2 12 12 C 1.46498 * 120.00135 * 180.02562 * 11 9 7 13 13 H 1.08998 * 112.84901 * 25.32460 * 12 11 9 14 14 C 1.53780 * 113.61465 * 156.52642 * 12 11 9 15 15 C 1.53782 * 87.08254 * 139.98242 * 14 12 11 16 16 H 1.09005 * 113.61254 * 219.93707 * 15 14 12 17 17 N 1.46498 * 113.61915 * 89.11356 * 15 14 12 18 18 C 1.36932 * 120.00002 * 155.00004 * 17 15 14 19 19 H 1.07998 * 120.00145 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99930 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00025 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46944 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47265 * 119.99978 * 22 20 18 25 25 H 1.48501 * 109.46941 * 239.99721 * 22 20 18 26 26 C 1.53786 * 113.61419 * 254.13124 * 12 11 9 27 27 H 1.08998 * 109.46882 * 305.15839 * 1 2 3 28 28 H 1.08993 * 109.46860 * 65.15701 * 1 2 3 29 29 H 1.08996 * 109.46670 * 185.15836 * 1 2 3 30 30 H 1.08995 * 110.62351 * 78.43421 * 5 4 2 31 31 H 1.08999 * 110.61854 * 201.28047 * 5 4 2 32 32 H 1.09001 * 110.90655 * 278.83255 * 6 5 4 33 33 H 1.08996 * 110.91279 * 155.22093 * 6 5 4 34 34 H 1.09005 * 109.47045 * 59.99933 * 8 7 2 35 35 H 1.09004 * 109.46953 * 300.00060 * 8 7 2 36 36 H 1.08999 * 109.46795 * 179.97438 * 8 7 2 37 37 H 0.97002 * 120.00113 * 359.97438 * 11 9 7 38 38 H 1.09003 * 113.60960 * 254.52738 * 14 12 11 39 39 H 1.08999 * 113.62058 * 25.34420 * 14 12 11 40 40 H 0.97000 * 119.99620 * 335.00377 * 17 15 14 41 41 H 0.96999 * 119.99784 * 180.02562 * 21 20 18 42 42 H 1.08997 * 113.60994 * 334.57204 * 26 12 11 43 43 H 1.08995 * 113.61102 * 105.46610 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0189 -0.6980 -1.1576 5 6 2.2281 -2.0714 -0.7644 6 6 2.8324 -1.9524 0.6579 7 6 2.0541 -0.7480 1.2413 8 6 2.9884 0.1509 2.0535 9 6 0.9062 -1.2220 2.0951 10 8 0.6574 -2.4064 2.1735 11 7 0.1561 -0.3296 2.7714 12 6 -0.9594 -0.7903 3.6018 13 1 -0.8328 -1.8155 3.9497 14 6 -1.3454 0.1956 4.7171 15 6 -2.8117 -0.1461 4.4038 16 1 -3.4772 0.7166 4.4348 17 7 -3.3240 -1.2876 5.1658 18 6 -4.6676 -1.4053 5.4024 19 1 -5.3495 -0.6565 5.0276 20 6 -5.1530 -2.4867 6.1248 21 7 -4.3218 -3.3991 6.5821 22 14 -6.9860 -2.6476 6.4470 23 1 -7.6994 -1.5002 5.8309 24 1 -7.4831 -3.9157 5.8554 25 1 -7.2324 -2.6546 7.9114 26 6 -2.3411 -0.5153 2.9852 27 1 -0.3633 0.5918 0.8402 28 1 -0.3633 0.4317 -0.9325 29 1 -0.3632 -1.0235 0.0924 30 1 1.2814 -2.6108 -0.7352 31 1 2.9274 -2.5622 -1.4414 32 1 3.9003 -1.7390 0.6102 33 1 2.6432 -2.8556 1.2379 34 1 2.4465 1.0393 2.3779 35 1 3.8355 0.4477 1.4350 36 1 3.3484 -0.3936 2.9263 37 1 0.3552 0.6177 2.7089 38 1 -1.0257 -0.1213 5.7098 39 1 -1.0800 1.2296 4.4971 40 1 -2.7114 -1.9600 5.5028 41 1 -4.6611 -4.1549 7.0866 42 1 -2.3496 0.3242 2.2900 43 1 -2.8241 -1.4052 2.5817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020424961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:46 Heat of formation + Delta-G solvation = -50.871437 kcal Electronic energy + Delta-G solvation = -23206.559614 eV Core-core repulsion = 19866.686453 eV Total energy + Delta-G solvation = -3339.873161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.15682 -39.04068 -37.67017 -34.39945 -33.75144 -32.56159 -31.25688 -29.67218 -28.85253 -25.15377 -25.00674 -24.58346 -23.33622 -21.99193 -21.82020 -19.77145 -18.57110 -17.41581 -17.31848 -16.70916 -15.96275 -15.51773 -14.92261 -14.83272 -14.59014 -14.15659 -13.94943 -13.54298 -13.30383 -13.11413 -12.82310 -12.65614 -12.57268 -12.27427 -12.05715 -11.99414 -11.90449 -11.58370 -11.26066 -11.23021 -10.91025 -10.84072 -10.78672 -10.26517 -10.14142 -9.90995 -9.85509 -9.73416 -9.49425 -8.93182 -8.68712 -7.02031 -5.80773 -3.10863 2.66072 3.21939 3.41887 3.47362 3.49895 3.71126 4.08252 4.39305 4.53676 4.55002 4.76618 4.90572 5.00595 5.05087 5.07326 5.21153 5.26670 5.35521 5.37554 5.41968 5.46325 5.47723 5.61722 5.70734 5.76260 5.83574 5.85561 5.89099 5.97955 6.05614 6.10577 6.19931 6.35399 6.59917 6.64823 6.70464 6.76611 7.01246 7.62053 7.68677 8.31496 8.37405 9.48332 10.04460 10.38323 11.41479 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031863 B = 0.003538 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.556768 B = 7912.400074 C = 7982.233934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.090 3.910 3 H 0.101 0.899 4 O -0.371 6.371 5 C 0.046 3.954 6 C -0.137 4.137 7 C -0.117 4.117 8 C -0.136 4.136 9 C 0.530 3.470 10 O -0.534 6.534 11 N -0.715 5.715 12 C 0.125 3.875 13 H 0.112 0.888 14 C -0.164 4.164 15 C 0.172 3.828 16 H 0.068 0.932 17 N -0.705 5.705 18 C -0.245 4.245 19 H 0.073 0.927 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.183 4.183 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.395 0.605 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.068 0.932 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.974 9.699 -11.945 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.031 3.969 3 H 0.118 0.882 4 O -0.290 6.290 5 C -0.030 4.030 6 C -0.175 4.175 7 C -0.120 4.120 8 C -0.193 4.193 9 C 0.315 3.685 10 O -0.410 6.410 11 N -0.365 5.365 12 C 0.022 3.978 13 H 0.130 0.870 14 C -0.204 4.204 15 C 0.058 3.942 16 H 0.086 0.914 17 N -0.344 5.344 18 C -0.376 4.376 19 H 0.091 0.909 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.225 4.225 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.230 0.770 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.603 8.919 -12.031 21.628 hybrid contribution -0.718 -0.064 0.456 0.853 sum 14.885 8.855 -11.575 20.832 Atomic orbital electron populations 1.22583 0.94965 1.03533 1.03198 1.22754 0.94337 0.96345 0.83417 0.88166 1.88889 1.86001 1.21156 1.32945 1.23570 1.00443 0.84018 0.94987 1.23144 0.99393 0.98333 0.96633 1.22293 0.95489 0.97958 0.96309 1.21837 0.98821 0.98640 1.00036 1.20034 0.82590 0.86418 0.79456 1.90721 1.70264 1.16578 1.63449 1.46237 1.32515 1.09489 1.48307 1.22645 0.84172 0.99706 0.91321 0.87012 1.23890 0.99719 0.98226 0.98568 1.20945 0.91410 0.91767 0.90033 0.91388 1.42200 1.05732 1.24273 1.62164 1.19315 0.83688 1.06170 1.28464 0.90872 1.24779 0.97888 0.97348 1.00694 1.69679 1.33199 1.13405 1.41477 0.86099 0.84929 0.77476 0.77556 1.20469 1.21792 1.21809 1.24337 0.96078 1.01575 1.00556 0.90523 0.91468 0.91734 0.91700 0.88801 0.89949 0.88295 0.91799 0.91090 0.91497 0.77022 0.90880 0.90367 0.77996 0.93411 0.91310 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 8.30 37.16 0.31 -1.73 16 2 C 0.09 0.91 3.76 -26.15 -0.10 0.81 16 3 H 0.10 0.80 7.69 -51.93 -0.40 0.41 16 4 O -0.37 -4.35 11.19 -35.23 -0.39 -4.74 16 5 C 0.05 0.49 7.67 38.21 0.29 0.79 16 6 C -0.14 -1.42 6.07 -24.72 -0.15 -1.57 16 7 C -0.12 -1.21 0.85 -154.13 -0.13 -1.34 16 8 C -0.14 -1.04 8.07 37.16 0.30 -0.74 16 9 C 0.53 7.30 4.61 -10.98 -0.05 7.25 16 10 O -0.53 -9.78 15.09 5.55 0.08 -9.69 16 11 N -0.71 -8.89 3.76 -53.02 -0.20 -9.09 16 12 C 0.13 2.00 4.09 -67.12 -0.27 1.72 16 13 H 0.11 2.19 7.50 -51.93 -0.39 1.80 16 14 C -0.16 -2.50 7.58 -25.92 -0.20 -2.69 16 15 C 0.17 3.28 4.57 -67.03 -0.31 2.97 16 16 H 0.07 1.28 8.10 -51.93 -0.42 0.85 16 17 N -0.71 -17.48 5.31 -52.55 -0.28 -17.76 16 18 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 21 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 22 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 C -0.18 -3.13 7.69 -25.82 -0.20 -3.33 16 27 H 0.08 0.77 6.02 -51.93 -0.31 0.45 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.88 7.22 -51.93 -0.38 0.51 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.69 7.85 -51.93 -0.41 0.28 16 33 H 0.10 1.19 6.92 -51.93 -0.36 0.83 16 34 H 0.06 0.39 7.36 -51.93 -0.38 0.01 16 35 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.39 3.68 7.15 -40.82 -0.29 3.39 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 40 H 0.39 10.26 7.90 -40.82 -0.32 9.94 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -32.34 341.05 -7.71 -40.05 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -7.01 Total: 11.41 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.75 Total: -5.17 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.25 Total: -54.27 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.31 Total: -14.43 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.34 -7.71 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020424961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.824 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds