Wall clock time and date at job start Tue Mar 31 2020 05:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.99161 * 2 1 4 4 O 1.43742 * 109.88178 * 238.90957 * 2 1 3 5 5 C 1.44379 * 106.97387 * 267.09320 * 4 2 1 6 6 C 1.54999 * 103.49118 * 319.93600 * 5 4 2 7 7 C 1.54107 * 109.87918 * 121.07546 * 2 1 3 8 8 C 1.52996 * 110.48933 * 236.07437 * 7 2 1 9 9 C 1.50702 * 110.48579 * 358.58727 * 7 2 1 10 10 O 1.21285 * 120.00025 * 110.29308 * 9 7 2 11 11 N 1.34778 * 120.00146 * 290.30030 * 9 7 2 12 12 C 1.46498 * 120.00135 * 180.02562 * 11 9 7 13 13 H 1.08998 * 112.84901 * 25.32460 * 12 11 9 14 14 C 1.53780 * 113.61465 * 156.52642 * 12 11 9 15 15 C 1.53782 * 87.08254 * 139.98242 * 14 12 11 16 16 H 1.09005 * 113.61254 * 219.93707 * 15 14 12 17 17 N 1.46498 * 113.61915 * 89.11356 * 15 14 12 18 18 C 1.36932 * 120.00002 * 155.00004 * 17 15 14 19 19 H 1.07998 * 120.00145 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99930 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00025 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46944 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47265 * 119.99978 * 22 20 18 25 25 H 1.48501 * 109.46941 * 239.99721 * 22 20 18 26 26 C 1.53786 * 113.61419 * 254.13124 * 12 11 9 27 27 H 1.08998 * 109.46882 * 305.15839 * 1 2 3 28 28 H 1.08993 * 109.46860 * 65.15701 * 1 2 3 29 29 H 1.08996 * 109.46670 * 185.15836 * 1 2 3 30 30 H 1.08995 * 110.62351 * 78.43421 * 5 4 2 31 31 H 1.08999 * 110.61854 * 201.28047 * 5 4 2 32 32 H 1.09001 * 110.90655 * 278.83255 * 6 5 4 33 33 H 1.08996 * 110.91279 * 155.22093 * 6 5 4 34 34 H 1.09005 * 109.47045 * 59.99933 * 8 7 2 35 35 H 1.09004 * 109.46953 * 300.00060 * 8 7 2 36 36 H 1.08999 * 109.46795 * 179.97438 * 8 7 2 37 37 H 0.97002 * 120.00113 * 359.97438 * 11 9 7 38 38 H 1.09003 * 113.60960 * 254.52738 * 14 12 11 39 39 H 1.08999 * 113.62058 * 25.34420 * 14 12 11 40 40 H 0.97000 * 119.99620 * 335.00377 * 17 15 14 41 41 H 0.96999 * 119.99784 * 180.02562 * 21 20 18 42 42 H 1.08997 * 113.60994 * 334.57204 * 26 12 11 43 43 H 1.08995 * 113.61102 * 105.46610 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0189 -0.6980 -1.1576 5 6 2.2281 -2.0714 -0.7644 6 6 2.8324 -1.9524 0.6579 7 6 2.0541 -0.7480 1.2413 8 6 2.9884 0.1509 2.0535 9 6 0.9062 -1.2220 2.0951 10 8 0.6574 -2.4064 2.1735 11 7 0.1561 -0.3296 2.7714 12 6 -0.9594 -0.7903 3.6018 13 1 -0.8328 -1.8155 3.9497 14 6 -1.3454 0.1956 4.7171 15 6 -2.8117 -0.1461 4.4038 16 1 -3.4772 0.7166 4.4348 17 7 -3.3240 -1.2876 5.1658 18 6 -4.6676 -1.4053 5.4024 19 1 -5.3495 -0.6565 5.0276 20 6 -5.1530 -2.4867 6.1248 21 7 -4.3218 -3.3991 6.5821 22 14 -6.9860 -2.6476 6.4470 23 1 -7.6994 -1.5002 5.8309 24 1 -7.4831 -3.9157 5.8554 25 1 -7.2324 -2.6546 7.9114 26 6 -2.3411 -0.5153 2.9852 27 1 -0.3633 0.5918 0.8402 28 1 -0.3633 0.4317 -0.9325 29 1 -0.3632 -1.0235 0.0924 30 1 1.2814 -2.6108 -0.7352 31 1 2.9274 -2.5622 -1.4414 32 1 3.9003 -1.7390 0.6102 33 1 2.6432 -2.8556 1.2379 34 1 2.4465 1.0393 2.3779 35 1 3.8355 0.4477 1.4350 36 1 3.3484 -0.3936 2.9263 37 1 0.3552 0.6177 2.7089 38 1 -1.0257 -0.1213 5.7098 39 1 -1.0800 1.2296 4.4971 40 1 -2.7114 -1.9600 5.5028 41 1 -4.6611 -4.1549 7.0866 42 1 -2.3496 0.3242 2.2900 43 1 -2.8241 -1.4052 2.5817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020424961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:45 Heat of formation + Delta-G solvation = -74.126316 kcal Electronic energy + Delta-G solvation = -23207.568021 eV Core-core repulsion = 19866.686453 eV Total energy + Delta-G solvation = -3340.881568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.14739 -40.27343 -38.91968 -35.83821 -35.05273 -33.93366 -32.23342 -31.51540 -29.62047 -26.55561 -26.44478 -25.59161 -24.94374 -23.12136 -22.76407 -20.92450 -19.93265 -19.34565 -18.30525 -17.69495 -17.20437 -16.66416 -16.57476 -15.94685 -15.76967 -15.46758 -15.29537 -14.86616 -14.43895 -14.27515 -14.08362 -13.68221 -13.51318 -13.39963 -13.30184 -13.23094 -12.91356 -12.90158 -12.79381 -12.55241 -12.13763 -12.12483 -11.96810 -11.83087 -11.69926 -11.60373 -11.33125 -10.92505 -10.74244 -10.64875 -9.93460 -9.03923 -7.97237 -5.26839 1.46419 1.47618 1.57303 1.57646 2.14902 2.54225 2.88525 3.27169 3.35272 3.54678 3.64608 3.73611 3.84661 3.90230 3.94978 4.10535 4.21769 4.26638 4.29938 4.34162 4.47156 4.59681 4.69870 4.76362 4.81885 4.83532 4.89287 4.95010 4.98812 5.01429 5.04311 5.16074 5.19636 5.24393 5.27650 5.32128 5.50412 5.68776 5.81530 6.25534 6.57777 7.27042 7.30134 8.06631 8.27463 9.26587 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031863 B = 0.003538 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.556768 B = 7912.400074 C = 7982.233934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.090 3.910 3 H 0.136 0.864 4 O -0.381 6.381 5 C 0.045 3.955 6 C -0.138 4.138 7 C -0.110 4.110 8 C -0.134 4.134 9 C 0.526 3.474 10 O -0.588 6.588 11 N -0.697 5.697 12 C 0.133 3.867 13 H 0.066 0.934 14 C -0.136 4.136 15 C 0.150 3.850 16 H 0.079 0.921 17 N -0.723 5.723 18 C -0.243 4.243 19 H 0.083 0.917 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.297 1.297 25 H -0.292 1.292 26 C -0.169 4.169 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.027 0.973 30 H 0.038 0.962 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.417 0.583 38 H 0.061 0.939 39 H 0.128 0.872 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.106 0.894 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.179 13.199 -12.942 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.032 3.968 3 H 0.154 0.846 4 O -0.300 6.300 5 C -0.032 4.032 6 C -0.176 4.176 7 C -0.114 4.114 8 C -0.191 4.191 9 C 0.313 3.687 10 O -0.468 6.468 11 N -0.349 5.349 12 C 0.027 3.973 13 H 0.084 0.916 14 C -0.176 4.176 15 C 0.039 3.961 16 H 0.097 0.903 17 N -0.361 5.361 18 C -0.374 4.374 19 H 0.100 0.900 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.804 3.196 23 H -0.186 1.186 24 H -0.225 1.225 25 H -0.219 1.219 26 C -0.211 4.211 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.255 0.745 38 H 0.079 0.921 39 H 0.146 0.854 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.124 0.876 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 16.827 12.520 -13.067 24.711 hybrid contribution -1.065 -1.122 0.677 1.688 sum 15.762 11.398 -12.389 23.062 Atomic orbital electron populations 1.22584 0.96056 1.01391 1.04110 1.22949 0.93518 0.97716 0.82605 0.84627 1.88880 1.86001 1.21305 1.33823 1.23592 0.99774 0.83841 0.95972 1.23175 1.00980 0.97551 0.95860 1.22313 0.94380 0.98527 0.96165 1.21899 0.99018 0.98530 0.99660 1.20769 0.83090 0.85700 0.79105 1.90709 1.71753 1.19146 1.65222 1.45967 1.31177 1.10520 1.47224 1.22157 0.84945 0.98052 0.92096 0.91570 1.23727 0.95898 1.00438 0.97504 1.21300 0.93917 0.90310 0.90591 0.90339 1.42402 1.04801 1.25750 1.63133 1.19760 0.85170 1.05706 1.26793 0.89962 1.25619 1.02166 0.97545 1.01636 1.69847 1.35072 1.14202 1.43178 0.85050 0.80025 0.77457 0.77093 1.18564 1.22492 1.21925 1.24193 0.96070 1.01082 0.99798 0.89251 0.90792 0.95427 0.94347 0.86624 0.87203 0.90765 0.89596 0.88872 0.92159 0.74458 0.92059 0.85396 0.79742 0.94074 0.87610 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 8.30 71.98 0.60 -3.11 16 2 C 0.09 1.55 3.76 30.97 0.12 1.67 16 3 H 0.14 1.46 7.69 -2.39 -0.02 1.44 16 4 O -0.38 -8.13 11.19 -148.98 -1.67 -9.80 16 5 C 0.04 0.93 7.67 72.67 0.56 1.48 16 6 C -0.14 -2.71 6.07 31.90 0.19 -2.52 16 7 C -0.11 -2.05 0.85 -51.94 -0.04 -2.09 16 8 C -0.13 -1.50 8.07 71.98 0.58 -0.92 16 9 C 0.53 14.29 4.61 87.66 0.40 14.70 16 10 O -0.59 -22.77 15.09 -3.05 -0.05 -22.82 16 11 N -0.70 -16.07 3.76 -440.03 -1.65 -17.72 16 12 C 0.13 4.19 4.09 45.52 0.19 4.38 16 13 H 0.07 2.76 7.50 -2.39 -0.02 2.74 16 14 C -0.14 -3.85 7.58 31.12 0.24 -3.61 16 15 C 0.15 5.58 4.57 45.58 0.21 5.79 16 16 H 0.08 2.77 8.10 -2.38 -0.02 2.75 16 17 N -0.72 -36.70 5.31 -320.17 -1.70 -38.40 16 18 C -0.24 -13.51 9.97 84.03 0.84 -12.67 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 22 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 C -0.17 -5.70 7.69 31.18 0.24 -5.46 16 27 H 0.09 1.50 6.02 -2.39 -0.01 1.49 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 0.75 7.22 -2.39 -0.02 0.74 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.11 1.54 7.85 -2.39 -0.02 1.52 16 33 H 0.07 1.86 6.92 -2.39 -0.02 1.84 16 34 H 0.09 0.60 7.36 -2.38 -0.02 0.58 16 35 H 0.09 0.70 8.11 -2.38 -0.02 0.69 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.42 6.02 7.15 -92.71 -0.66 5.35 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.13 2.39 8.11 -2.39 -0.02 2.37 16 40 H 0.37 20.69 7.90 -92.71 -0.73 19.96 16 41 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -75.42 341.05 1.44 -73.97 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.38 Total: 33.32 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 4.58 Total: -6.43 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -3.07 Total: -116.89 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.71 Total: -32.61 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -75.42 1.44 -73.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020424961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.153 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds