Wall clock time and date at job start Tue Mar 31 2020 05:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.99181 * 2 1 4 4 C 1.54104 * 109.88145 * 121.08119 * 2 1 3 5 5 C 1.54992 * 104.24952 * 121.58798 * 4 2 1 6 6 C 1.54995 * 102.01168 * 20.67171 * 5 4 2 7 7 H 1.08996 * 110.61834 * 81.75580 * 6 5 4 8 8 C 1.53002 * 110.61655 * 204.58891 * 6 5 4 9 9 C 1.50696 * 109.47189 * 182.82115 * 8 6 5 10 10 O 1.21278 * 119.99884 * 359.97438 * 9 8 6 11 11 N 1.34781 * 119.99856 * 180.02562 * 9 8 6 12 12 C 1.46504 * 119.99595 * 180.02562 * 11 9 8 13 13 H 1.09004 * 112.84633 * 336.18950 * 12 11 9 14 14 C 1.53774 * 113.69170 * 107.46232 * 12 11 9 15 15 C 1.53782 * 87.08161 * 139.98977 * 14 12 11 16 16 H 1.09002 * 113.68975 * 220.00709 * 15 14 12 17 17 N 1.46498 * 113.61718 * 89.11276 * 15 14 12 18 18 C 1.36943 * 119.99752 * 107.22616 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 C 1.53781 * 87.08215 * 334.56639 * 15 14 12 27 27 O 1.43742 * 109.88174 * 238.91377 * 2 1 3 28 28 H 1.08994 * 109.47086 * 179.63283 * 1 2 3 29 29 H 1.08997 * 109.46670 * 299.63213 * 1 2 3 30 30 H 1.09001 * 109.46814 * 59.63383 * 1 2 3 31 31 H 1.08991 * 110.48854 * 240.13164 * 4 2 1 32 32 H 1.08997 * 110.48381 * 2.64649 * 4 2 1 33 33 H 1.08998 * 110.84331 * 262.54006 * 5 4 2 34 34 H 1.08999 * 111.04350 * 138.88803 * 5 4 2 35 35 H 1.09005 * 109.46729 * 62.82386 * 8 6 5 36 36 H 1.08994 * 109.47629 * 302.82918 * 8 6 5 37 37 H 0.96996 * 120.00132 * 359.97438 * 11 9 8 38 38 H 1.08999 * 113.61704 * 25.43765 * 14 12 11 39 39 H 1.09006 * 113.61200 * 254.53450 * 14 12 11 40 40 H 0.97001 * 120.00384 * 287.50972 * 17 15 14 41 41 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 42 42 H 1.08995 * 113.61890 * 139.98284 * 26 15 14 43 43 H 1.08997 * 113.61580 * 270.88803 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0541 -0.7481 1.2411 5 6 2.9238 -1.8912 0.6586 6 6 3.2379 -1.3641 -0.7647 7 1 4.0691 -0.6594 -0.7383 8 6 3.5476 -2.5244 -1.7127 9 6 3.9163 -1.9804 -3.0689 10 8 3.9296 -0.7827 -3.2586 11 7 4.2303 -2.8251 -4.0711 12 6 4.5893 -2.2962 -5.3893 13 1 4.1860 -1.2997 -5.5697 14 6 6.0855 -2.4245 -5.7200 15 6 5.6572 -2.7983 -7.1489 16 1 6.2531 -3.5976 -7.5897 17 7 5.5077 -1.6436 -8.0379 18 6 6.4346 -1.4099 -9.0185 19 1 7.2734 -2.0794 -9.1392 20 6 6.2961 -0.3125 -9.8572 21 7 5.2741 0.5037 -9.7095 22 14 7.5601 0.0060 -11.1951 23 1 8.6030 -1.0503 -11.1524 24 1 6.8922 -0.0120 -12.5214 25 1 8.1895 1.3330 -10.9758 26 6 4.3307 -3.2829 -6.5402 27 8 2.0188 -0.6979 -1.1576 28 1 -0.3633 -1.0276 -0.0066 29 1 -0.3632 0.5081 0.8933 30 1 -0.3633 0.5195 -0.8867 31 1 2.6619 -0.0858 1.8574 32 1 1.2246 -1.1528 1.8211 33 1 2.3599 -2.8228 0.6128 34 1 3.8389 -2.0200 1.2365 35 1 2.6691 -3.1633 -1.8041 36 1 4.3798 -3.1058 -1.3159 37 1 4.2193 -3.7831 -3.9195 38 1 6.5826 -3.2349 -5.1870 39 1 6.6285 -1.4811 -5.6597 40 1 4.7544 -1.0422 -7.9294 41 1 5.1771 1.2704 -10.2958 42 1 3.4570 -3.0328 -7.1419 43 1 4.3481 -4.3281 -6.2314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020545321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:14 Heat of formation + Delta-G solvation = -60.712484 kcal Electronic energy + Delta-G solvation = -22061.975542 eV Core-core repulsion = 18721.675642 eV Total energy + Delta-G solvation = -3340.299901 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14805 -39.28689 -37.79960 -33.93937 -33.04893 -32.52606 -32.33397 -29.87319 -29.12500 -25.18813 -25.05538 -24.02441 -22.71373 -21.59168 -21.10521 -20.19003 -18.69168 -17.34092 -17.13934 -16.42670 -16.03800 -16.00790 -15.08929 -14.85792 -14.60457 -14.09951 -13.85492 -13.56827 -13.24413 -13.08483 -12.70664 -12.56693 -12.36795 -12.26869 -11.97895 -11.87914 -11.78279 -11.58387 -11.29723 -11.00893 -10.90852 -10.86479 -10.76034 -10.20593 -10.09752 -9.83584 -9.71067 -9.68000 -9.41757 -8.88470 -8.59148 -6.97078 -5.76150 -3.06197 2.89160 3.40353 3.44786 3.49851 3.52651 3.63917 4.28402 4.43790 4.58776 4.66862 4.74772 4.83595 4.99504 5.11978 5.14825 5.19833 5.22762 5.32289 5.35526 5.44852 5.46545 5.47058 5.52252 5.58097 5.71150 5.84961 5.89793 5.92011 5.97810 6.04937 6.13404 6.29386 6.44033 6.68662 6.78229 6.85006 6.89623 7.10256 7.72030 7.78970 8.42037 8.52058 9.52671 10.09622 10.43557 11.46116 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030096 B = 0.002887 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.134551 B = 9694.657128 C =10188.791233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 H 0.067 0.933 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.094 3.906 7 H 0.078 0.922 8 C -0.137 4.137 9 C 0.508 3.492 10 O -0.526 6.526 11 N -0.722 5.722 12 C 0.126 3.874 13 H 0.112 0.888 14 C -0.184 4.184 15 C 0.171 3.829 16 H 0.067 0.933 17 N -0.706 5.706 18 C -0.244 4.244 19 H 0.073 0.927 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.164 4.164 27 O -0.356 6.356 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.394 0.606 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.072 0.928 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 -9.068 23.353 25.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.190 4.190 5 C -0.189 4.189 6 C 0.036 3.964 7 H 0.096 0.904 8 C -0.177 4.177 9 C 0.293 3.707 10 O -0.402 6.402 11 N -0.372 5.372 12 C 0.022 3.978 13 H 0.130 0.870 14 C -0.227 4.227 15 C 0.058 3.942 16 H 0.085 0.915 17 N -0.345 5.345 18 C -0.375 4.375 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.204 4.204 27 O -0.275 6.275 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.606 -8.158 22.835 25.133 hybrid contribution 0.497 -0.020 -0.314 0.588 sum -6.110 -8.177 22.521 24.727 Atomic orbital electron populations 1.21915 0.93902 1.02579 1.02313 1.22704 0.95043 0.96051 0.85066 0.91546 1.23039 1.00072 0.97673 0.98188 1.23221 1.00476 0.99023 0.96210 1.22799 0.89177 0.93003 0.91457 0.90448 1.21755 1.03666 0.98767 0.93490 1.20488 0.76887 0.87180 0.86109 1.90754 1.51164 1.15243 1.83017 1.46130 1.70093 1.09356 1.11663 1.22595 0.96436 0.99031 0.79737 0.86993 1.24310 0.95519 1.01828 1.00998 1.20911 0.93353 0.91087 0.88821 0.91454 1.42218 1.29738 1.27330 1.35168 1.19314 1.03261 1.07626 1.07308 0.90894 1.24794 0.98335 0.97782 0.99967 1.69685 1.30479 1.16643 1.40911 0.86092 0.80562 0.77696 0.81661 1.20504 1.21832 1.21818 1.23889 1.01199 0.98164 0.97190 1.89013 1.38835 1.67344 1.32339 0.92083 0.91535 0.91791 0.90783 0.90411 0.90402 0.90115 0.88291 0.87788 0.77240 0.91371 0.91144 0.77952 0.93424 0.90942 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.36 37.16 0.35 -0.96 16 2 C 0.07 0.71 4.06 -26.16 -0.11 0.61 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.15 -1.14 6.65 -25.10 -0.17 -1.31 16 5 C -0.15 -1.13 6.60 -24.63 -0.16 -1.30 16 6 C 0.09 1.04 2.77 -25.68 -0.07 0.97 16 7 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 8 C -0.14 -1.37 5.47 -27.88 -0.15 -1.52 16 9 C 0.51 7.59 7.75 -10.99 -0.09 7.51 16 10 O -0.53 -10.63 15.21 -2.57 -0.04 -10.67 16 11 N -0.72 -9.80 5.36 -53.02 -0.28 -10.08 16 12 C 0.13 2.17 4.11 -67.12 -0.28 1.90 16 13 H 0.11 2.37 7.46 -51.93 -0.39 1.98 16 14 C -0.18 -3.32 7.68 -25.92 -0.20 -3.52 16 15 C 0.17 3.42 4.56 -67.12 -0.31 3.12 16 16 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 17 N -0.71 -18.08 5.31 -52.64 -0.28 -18.36 16 18 C -0.24 -6.87 9.97 -15.06 -0.15 -7.02 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C -0.16 -2.68 7.58 -25.92 -0.20 -2.88 16 27 O -0.36 -4.93 10.41 -43.36 -0.45 -5.38 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.48 7.70 -51.93 -0.40 0.08 16 33 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.39 3.87 8.73 -40.82 -0.36 3.51 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.39 10.62 7.90 -40.82 -0.32 10.30 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -34.71 352.02 -9.01 -43.71 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.34 Total: 10.67 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.62 Total: -4.86 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.16 Total: -56.42 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.49 Total: -16.05 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.71 -9.01 -43.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020545321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.001 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds