Wall clock time and date at job start Tue Mar 31 2020 05:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.99181 * 2 1 4 4 C 1.54104 * 109.88145 * 121.08119 * 2 1 3 5 5 C 1.54992 * 104.24952 * 121.58798 * 4 2 1 6 6 C 1.54995 * 102.01168 * 20.67171 * 5 4 2 7 7 H 1.08996 * 110.61834 * 81.75580 * 6 5 4 8 8 C 1.53002 * 110.61655 * 204.58891 * 6 5 4 9 9 C 1.50696 * 109.47189 * 182.82115 * 8 6 5 10 10 O 1.21278 * 119.99884 * 359.97438 * 9 8 6 11 11 N 1.34781 * 119.99856 * 180.02562 * 9 8 6 12 12 C 1.46504 * 119.99595 * 180.02562 * 11 9 8 13 13 H 1.09004 * 112.84633 * 336.18950 * 12 11 9 14 14 C 1.53774 * 113.69170 * 107.46232 * 12 11 9 15 15 C 1.53782 * 87.08161 * 139.98977 * 14 12 11 16 16 H 1.09002 * 113.68975 * 220.00709 * 15 14 12 17 17 N 1.46498 * 113.61718 * 89.11276 * 15 14 12 18 18 C 1.36943 * 119.99752 * 107.22616 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 C 1.53781 * 87.08215 * 334.56639 * 15 14 12 27 27 O 1.43742 * 109.88174 * 238.91377 * 2 1 3 28 28 H 1.08994 * 109.47086 * 179.63283 * 1 2 3 29 29 H 1.08997 * 109.46670 * 299.63213 * 1 2 3 30 30 H 1.09001 * 109.46814 * 59.63383 * 1 2 3 31 31 H 1.08991 * 110.48854 * 240.13164 * 4 2 1 32 32 H 1.08997 * 110.48381 * 2.64649 * 4 2 1 33 33 H 1.08998 * 110.84331 * 262.54006 * 5 4 2 34 34 H 1.08999 * 111.04350 * 138.88803 * 5 4 2 35 35 H 1.09005 * 109.46729 * 62.82386 * 8 6 5 36 36 H 1.08994 * 109.47629 * 302.82918 * 8 6 5 37 37 H 0.96996 * 120.00132 * 359.97438 * 11 9 8 38 38 H 1.08999 * 113.61704 * 25.43765 * 14 12 11 39 39 H 1.09006 * 113.61200 * 254.53450 * 14 12 11 40 40 H 0.97001 * 120.00384 * 287.50972 * 17 15 14 41 41 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 42 42 H 1.08995 * 113.61890 * 139.98284 * 26 15 14 43 43 H 1.08997 * 113.61580 * 270.88803 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0541 -0.7481 1.2411 5 6 2.9238 -1.8912 0.6586 6 6 3.2379 -1.3641 -0.7647 7 1 4.0691 -0.6594 -0.7383 8 6 3.5476 -2.5244 -1.7127 9 6 3.9163 -1.9804 -3.0689 10 8 3.9296 -0.7827 -3.2586 11 7 4.2303 -2.8251 -4.0711 12 6 4.5893 -2.2962 -5.3893 13 1 4.1860 -1.2997 -5.5697 14 6 6.0855 -2.4245 -5.7200 15 6 5.6572 -2.7983 -7.1489 16 1 6.2531 -3.5976 -7.5897 17 7 5.5077 -1.6436 -8.0379 18 6 6.4346 -1.4099 -9.0185 19 1 7.2734 -2.0794 -9.1392 20 6 6.2961 -0.3125 -9.8572 21 7 5.2741 0.5037 -9.7095 22 14 7.5601 0.0060 -11.1951 23 1 8.6030 -1.0503 -11.1524 24 1 6.8922 -0.0120 -12.5214 25 1 8.1895 1.3330 -10.9758 26 6 4.3307 -3.2829 -6.5402 27 8 2.0188 -0.6979 -1.1576 28 1 -0.3633 -1.0276 -0.0066 29 1 -0.3632 0.5081 0.8933 30 1 -0.3633 0.5195 -0.8867 31 1 2.6619 -0.0858 1.8574 32 1 1.2246 -1.1528 1.8211 33 1 2.3599 -2.8228 0.6128 34 1 3.8389 -2.0200 1.2365 35 1 2.6691 -3.1633 -1.8041 36 1 4.3798 -3.1058 -1.3159 37 1 4.2193 -3.7831 -3.9195 38 1 6.5826 -3.2349 -5.1870 39 1 6.6285 -1.4811 -5.6597 40 1 4.7544 -1.0422 -7.9294 41 1 5.1771 1.2704 -10.2958 42 1 3.4570 -3.0328 -7.1419 43 1 4.3481 -4.3281 -6.2314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020545321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:14 Heat of formation + Delta-G solvation = -86.163555 kcal Electronic energy + Delta-G solvation = -22063.079183 eV Core-core repulsion = 18721.675642 eV Total energy + Delta-G solvation = -3341.403542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.23415 -40.36832 -39.19203 -35.71307 -34.31272 -33.67339 -33.14576 -31.70945 -30.05675 -26.54592 -26.44669 -25.54142 -24.17052 -22.51612 -21.81589 -21.34811 -20.19657 -19.35834 -18.13762 -17.40943 -17.36640 -16.85234 -16.67791 -16.03541 -15.87280 -15.61982 -15.22642 -14.90635 -14.35293 -14.27750 -14.05975 -13.65175 -13.39452 -13.29787 -13.18742 -13.10032 -12.86409 -12.77940 -12.61628 -12.48557 -12.13626 -12.05764 -11.82036 -11.72012 -11.70762 -11.49733 -11.32307 -10.92861 -10.69782 -10.57570 -9.91818 -9.04503 -7.96939 -5.27209 1.45934 1.47770 1.57865 1.73799 2.29564 2.54272 2.89991 3.35079 3.62196 3.65438 3.71864 3.84212 3.90041 3.94610 4.03386 4.04398 4.25849 4.30413 4.34142 4.41583 4.54136 4.60328 4.64918 4.77923 4.82479 4.85599 4.92268 4.94339 5.01742 5.09228 5.15252 5.16493 5.22684 5.26074 5.30329 5.34864 5.50723 5.72914 6.11852 6.25541 6.70134 7.29441 7.42443 8.05945 8.27231 9.27003 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030096 B = 0.002887 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.134551 B = 9694.657128 C =10188.791233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 H 0.049 0.951 4 C -0.146 4.146 5 C -0.138 4.138 6 C 0.080 3.920 7 H 0.050 0.950 8 C -0.124 4.124 9 C 0.499 3.501 10 O -0.591 6.591 11 N -0.704 5.704 12 C 0.130 3.870 13 H 0.061 0.939 14 C -0.169 4.169 15 C 0.150 3.850 16 H 0.080 0.920 17 N -0.725 5.725 18 C -0.242 4.242 19 H 0.084 0.916 20 C -0.082 4.082 21 N -0.974 5.974 22 Si 0.978 3.022 23 H -0.260 1.260 24 H -0.292 1.292 25 H -0.297 1.297 26 C -0.138 4.138 27 O -0.395 6.395 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.146 0.854 37 H 0.419 0.581 38 H 0.109 0.891 39 H 0.030 0.970 40 H 0.370 0.630 41 H 0.251 0.749 42 H 0.057 0.943 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 -12.596 25.483 29.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.003 4.003 3 H 0.067 0.933 4 C -0.184 4.184 5 C -0.176 4.176 6 C 0.023 3.977 7 H 0.068 0.932 8 C -0.163 4.163 9 C 0.287 3.713 10 O -0.470 6.470 11 N -0.356 5.356 12 C 0.024 3.976 13 H 0.079 0.921 14 C -0.211 4.211 15 C 0.039 3.961 16 H 0.098 0.902 17 N -0.363 5.363 18 C -0.373 4.373 19 H 0.102 0.898 20 C -0.274 4.274 21 N -0.624 5.624 22 Si 0.807 3.193 23 H -0.184 1.184 24 H -0.219 1.219 25 H -0.224 1.224 26 C -0.177 4.177 27 O -0.316 6.316 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.257 0.743 38 H 0.127 0.873 39 H 0.050 0.950 40 H 0.202 0.798 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.062 -11.795 25.012 28.310 hybrid contribution 0.332 1.056 -0.911 1.434 sum -5.730 -10.738 24.101 27.001 Atomic orbital electron populations 1.21907 0.92888 1.02966 1.02509 1.22919 0.95987 0.95566 0.85780 0.93254 1.23033 1.00847 0.97630 0.96883 1.23197 1.01575 0.99328 0.93478 1.22971 0.87666 0.92921 0.94183 0.93205 1.21836 1.06052 0.98674 0.89750 1.21510 0.75432 0.86445 0.87917 1.90740 1.53834 1.18251 1.84212 1.45884 1.69221 1.10595 1.09902 1.22112 0.95829 0.97421 0.82253 0.92098 1.24169 0.95766 1.01199 0.99968 1.21269 0.96224 0.89742 0.88849 0.90176 1.42445 1.28916 1.28905 1.36012 1.19773 1.03391 1.07150 1.07021 0.89821 1.25690 1.00631 0.98126 1.02935 1.69864 1.32841 1.17408 1.42310 0.85000 0.78400 0.77484 0.78428 1.18433 1.21926 1.22431 1.23738 0.98244 1.00372 0.95364 1.88980 1.39878 1.68076 1.34638 0.91471 0.89211 0.93773 0.89986 0.88439 0.88592 0.88026 0.85894 0.83611 0.74300 0.87276 0.95050 0.79846 0.94073 0.92456 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.36 71.98 0.67 -1.79 16 2 C 0.06 1.14 4.06 30.97 0.13 1.26 16 3 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.15 -1.87 6.65 31.65 0.21 -1.66 16 5 C -0.14 -1.63 6.60 31.96 0.21 -1.42 16 6 C 0.08 1.71 2.77 31.28 0.09 1.79 16 7 H 0.05 1.29 7.96 -2.39 -0.02 1.27 16 8 C -0.12 -2.14 5.47 29.85 0.16 -1.98 16 9 C 0.50 14.62 7.75 87.66 0.68 15.30 16 10 O -0.59 -25.16 15.21 4.75 0.07 -25.08 16 11 N -0.70 -17.72 5.36 -440.03 -2.36 -20.08 16 12 C 0.13 4.45 4.11 45.52 0.19 4.64 16 13 H 0.06 2.77 7.46 -2.39 -0.02 2.75 16 14 C -0.17 -5.96 7.68 31.12 0.24 -5.72 16 15 C 0.15 5.85 4.56 45.52 0.21 6.06 16 16 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 17 N -0.73 -38.14 5.31 -320.44 -1.70 -39.84 16 18 C -0.24 -13.76 9.97 84.03 0.84 -12.92 16 19 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 20 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 21 N -0.97 -62.53 13.06 21.65 0.28 -62.24 16 22 Si 0.98 47.40 29.55 68.60 2.03 49.42 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 26 C -0.14 -4.23 7.58 31.12 0.24 -4.00 16 27 O -0.40 -11.16 10.41 -141.21 -1.47 -12.63 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.88 7.70 -2.39 -0.02 0.86 16 33 H 0.10 0.82 8.06 -2.39 -0.02 0.80 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.42 6.40 8.73 -92.71 -0.81 5.59 16 38 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.37 21.48 7.90 -92.71 -0.73 20.75 16 41 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.13 2.69 8.12 -2.39 -0.02 2.67 16 Total: -1.00 -82.44 352.02 0.64 -81.81 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.54 Total: 33.50 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 4.32 Total: -4.85 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -3.78 Total: -122.17 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.40 Total: -37.71 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -82.44 0.64 -81.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020545321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.355 kcal (2) G-P(sol) polarization free energy of solvation -82.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds