Wall clock time and date at job start Tue Mar 31 2020 05:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.67587 * 2 1 4 4 C 1.55000 * 110.61526 * 237.03407 * 2 1 3 5 5 C 1.54818 * 102.09030 * 204.47771 * 4 2 1 6 6 C 1.54097 * 104.18808 * 20.87976 * 5 4 2 7 7 H 1.08998 * 109.88273 * 242.60534 * 6 5 4 8 8 C 1.53004 * 109.87805 * 121.45614 * 6 5 4 9 9 C 1.50697 * 109.46934 * 175.71376 * 8 6 5 10 10 O 1.21281 * 120.00665 * 0.02562 * 9 8 6 11 11 N 1.34785 * 119.99676 * 179.97438 * 9 8 6 12 12 C 1.46500 * 119.99768 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.85262 * 336.20006 * 12 11 9 14 14 C 1.53781 * 113.61241 * 107.50537 * 12 11 9 15 15 C 1.53777 * 87.08054 * 89.11475 * 14 12 11 16 16 H 1.08997 * 113.61663 * 270.87954 * 15 14 12 17 17 N 1.46500 * 113.69130 * 139.99180 * 15 14 12 18 18 C 1.36945 * 120.00299 * 107.46405 * 17 15 14 19 19 H 1.08005 * 119.99576 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00160 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99899 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99971 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47527 * 89.99557 * 22 20 18 24 24 H 1.48504 * 109.47019 * 209.99805 * 22 20 18 25 25 H 1.48504 * 109.46810 * 329.99745 * 22 20 18 26 26 C 1.53777 * 87.08418 * 25.43194 * 15 14 12 27 27 O 1.43745 * 107.29442 * 2.03270 * 6 5 4 28 28 H 1.09003 * 109.46836 * 298.48606 * 1 2 3 29 29 H 1.08994 * 109.47163 * 58.48871 * 1 2 3 30 30 H 1.09002 * 109.47298 * 178.49042 * 1 2 3 31 31 H 1.08996 * 110.90766 * 86.28222 * 4 2 1 32 32 H 1.09001 * 110.94010 * 322.68241 * 4 2 1 33 33 H 1.09004 * 110.48564 * 262.20686 * 5 4 2 34 34 H 1.08997 * 110.48807 * 139.56009 * 5 4 2 35 35 H 1.09004 * 109.47054 * 295.71437 * 8 6 5 36 36 H 1.09001 * 109.47037 * 55.71456 * 8 6 5 37 37 H 0.96995 * 119.99678 * 359.97438 * 11 9 8 38 38 H 1.09004 * 113.61334 * 203.66424 * 14 12 11 39 39 H 1.08997 * 113.61868 * 334.56382 * 14 12 11 40 40 H 0.97000 * 119.99874 * 287.46063 * 17 15 14 41 41 H 0.97003 * 120.00058 * 180.02562 * 21 20 18 42 42 H 1.08995 * 113.61754 * 220.01904 * 26 15 14 43 43 H 1.08998 * 113.61478 * 89.11555 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0757 -0.7894 -1.2172 5 6 3.4795 -1.2169 -0.7235 6 6 3.3839 -1.1255 0.8118 7 1 4.0853 -0.3784 1.1831 8 6 3.6935 -2.4885 1.4343 9 6 3.7010 -2.3646 2.9362 10 8 3.4800 -1.2921 3.4574 11 7 3.9523 -3.4462 3.7002 12 6 3.9590 -3.3259 5.1603 13 1 4.1616 -2.3104 5.5005 14 6 2.7389 -3.9724 5.8372 15 6 3.5554 -5.2746 5.8874 16 1 3.4400 -5.8968 4.9999 17 7 3.3895 -6.0257 7.1342 18 6 2.6664 -7.1887 7.1419 19 1 2.2187 -7.5523 6.2287 20 6 2.5087 -7.9001 8.3233 21 7 3.0547 -7.4572 9.4360 22 14 1.5230 -9.4868 8.3337 23 1 2.4259 -10.6324 8.0551 24 1 0.8902 -9.6676 9.6649 25 1 0.4692 -9.4216 7.2894 26 6 4.8152 -4.3932 5.8623 27 8 2.0384 -0.7354 1.1337 28 1 -0.3633 0.4902 0.9033 29 1 -0.3633 0.5371 -0.8761 30 1 -0.3634 -1.0273 -0.0271 31 1 2.1509 -0.1477 -2.0950 32 1 1.4551 -1.6607 -1.4264 33 1 4.2406 -0.5333 -1.0997 34 1 3.6974 -2.2393 -1.0321 35 1 2.9314 -3.2071 1.1328 36 1 4.6706 -2.8303 1.0930 37 1 4.1279 -4.3042 3.2834 38 1 2.5152 -3.5591 6.8207 39 1 1.8620 -4.0314 5.1925 40 1 3.7919 -5.6994 7.9542 41 1 2.9449 -7.9546 10.2616 42 1 5.6146 -4.7918 5.2377 43 1 5.1592 -4.0949 6.8526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020545322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:17 Heat of formation + Delta-G solvation = -60.850027 kcal Electronic energy + Delta-G solvation = -22036.507083 eV Core-core repulsion = 18696.201218 eV Total energy + Delta-G solvation = -3340.305865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26087 -39.37247 -37.76919 -33.96639 -33.10649 -32.49882 -32.34585 -30.01937 -29.16358 -25.22090 -25.06852 -24.22810 -22.26611 -21.60898 -21.28386 -20.41166 -18.87972 -17.44660 -17.05043 -16.38569 -16.22409 -15.81009 -15.07194 -14.85736 -14.58906 -14.17369 -14.01317 -13.76777 -13.41306 -13.16594 -12.72939 -12.59875 -12.36595 -12.23451 -11.92765 -11.82210 -11.79966 -11.60466 -11.32840 -11.13373 -10.92399 -10.88976 -10.75610 -10.27709 -10.19828 -9.89032 -9.77229 -9.61340 -9.52414 -8.88712 -8.68532 -6.96657 -5.78883 -3.07759 2.81004 3.29701 3.42355 3.47650 3.49526 3.59734 4.24207 4.38642 4.58525 4.62481 4.67700 4.80812 4.95062 5.04169 5.10831 5.19119 5.21806 5.28404 5.32074 5.40504 5.43820 5.48228 5.54058 5.57096 5.66936 5.82025 5.85743 5.90566 5.93182 5.97307 6.20729 6.28669 6.36908 6.58607 6.69069 6.75610 6.85339 7.13697 7.68140 7.71275 8.39629 8.43354 9.50758 10.08623 10.43041 11.43547 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.002855 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.358139 B = 9803.725754 C =10218.280544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.151 4.151 5 C -0.154 4.154 6 C 0.095 3.905 7 H 0.075 0.925 8 C -0.142 4.142 9 C 0.513 3.487 10 O -0.532 6.532 11 N -0.711 5.711 12 C 0.117 3.883 13 H 0.094 0.906 14 C -0.176 4.176 15 C 0.167 3.833 16 H 0.073 0.927 17 N -0.713 5.713 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.159 4.159 27 O -0.353 6.353 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.399 0.601 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 13.130 -22.899 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.085 0.915 4 C -0.189 4.189 5 C -0.192 4.192 6 C 0.036 3.964 7 H 0.093 0.907 8 C -0.182 4.182 9 C 0.299 3.701 10 O -0.408 6.408 11 N -0.362 5.362 12 C 0.011 3.989 13 H 0.112 0.888 14 C -0.218 4.218 15 C 0.055 3.945 16 H 0.091 0.909 17 N -0.351 5.351 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.199 4.199 27 O -0.273 6.273 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.233 0.767 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.432 13.674 -22.315 26.211 hybrid contribution -0.215 -1.217 -0.010 1.236 sum 1.217 12.457 -22.326 25.595 Atomic orbital electron populations 1.21758 0.93245 1.02917 1.02408 1.23124 0.95265 0.95425 0.85180 0.91464 1.23193 0.96231 1.00892 0.98567 1.23039 0.97951 1.02950 0.95250 1.22401 0.86064 0.95054 0.92871 0.90714 1.21933 1.04245 0.99023 0.93001 1.20463 0.76348 0.84144 0.89109 1.90714 1.47719 1.27478 1.74844 1.45737 1.72160 1.11629 1.06670 1.21781 0.98733 0.99593 0.78792 0.88792 1.24288 0.97010 1.00294 1.00237 1.21614 0.91931 0.89866 0.91122 0.90925 1.42407 1.61824 1.25333 1.05490 1.19298 1.24852 0.98788 0.94602 0.91132 1.24769 1.01153 0.99353 0.95641 1.69660 1.49010 1.40258 0.99096 0.86185 0.79630 0.83521 0.76827 1.21700 1.21740 1.20722 1.23852 0.98412 0.97055 1.00596 1.89063 1.26931 1.73182 1.38094 0.91687 0.91350 0.91818 0.90408 0.90393 0.90481 0.90174 0.88191 0.87834 0.76735 0.89708 0.92453 0.78025 0.93435 0.91842 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.66 37.16 0.36 -0.85 16 2 C 0.07 0.63 3.98 -25.68 -0.10 0.53 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.15 -1.05 6.59 -24.72 -0.16 -1.21 16 5 C -0.15 -1.07 6.64 -25.20 -0.17 -1.23 16 6 C 0.09 0.98 2.93 -26.16 -0.08 0.90 16 7 H 0.07 0.85 7.96 -51.93 -0.41 0.43 16 8 C -0.14 -1.37 5.19 -27.88 -0.14 -1.51 16 9 C 0.51 7.20 7.73 -10.98 -0.08 7.12 16 10 O -0.53 -9.75 15.10 -6.70 -0.10 -9.85 16 11 N -0.71 -9.46 5.26 -53.02 -0.28 -9.74 16 12 C 0.12 1.85 4.32 -67.12 -0.29 1.55 16 13 H 0.09 1.59 7.46 -51.93 -0.39 1.20 16 14 C -0.18 -3.25 7.68 -25.92 -0.20 -3.44 16 15 C 0.17 3.26 4.35 -67.12 -0.29 2.97 16 16 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 17 N -0.71 -17.85 5.40 -52.64 -0.28 -18.14 16 18 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 22 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.16 -2.58 7.58 -25.92 -0.20 -2.78 16 27 O -0.35 -4.63 10.24 -47.49 -0.49 -5.12 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.45 7.70 -51.93 -0.40 0.05 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.40 4.29 8.70 -40.82 -0.36 3.93 16 38 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.39 10.25 7.92 -40.82 -0.32 9.93 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 1.51 8.12 -51.93 -0.42 1.09 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -33.95 351.76 -9.09 -43.03 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -7.34 Total: 10.01 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.60 Total: -5.35 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.16 Total: -55.36 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.59 Total: -14.97 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.95 -9.09 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020545322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.816 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds