Wall clock time and date at job start Tue Mar 31 2020 05:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.67587 * 2 1 4 4 C 1.55000 * 110.61526 * 237.03407 * 2 1 3 5 5 C 1.54818 * 102.09030 * 204.47771 * 4 2 1 6 6 C 1.54097 * 104.18808 * 20.87976 * 5 4 2 7 7 H 1.08998 * 109.88273 * 242.60534 * 6 5 4 8 8 C 1.53004 * 109.87805 * 121.45614 * 6 5 4 9 9 C 1.50697 * 109.46934 * 175.71376 * 8 6 5 10 10 O 1.21281 * 120.00665 * 0.02562 * 9 8 6 11 11 N 1.34785 * 119.99676 * 179.97438 * 9 8 6 12 12 C 1.46500 * 119.99768 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.85262 * 336.20006 * 12 11 9 14 14 C 1.53781 * 113.61241 * 107.50537 * 12 11 9 15 15 C 1.53777 * 87.08054 * 89.11475 * 14 12 11 16 16 H 1.08997 * 113.61663 * 270.87954 * 15 14 12 17 17 N 1.46500 * 113.69130 * 139.99180 * 15 14 12 18 18 C 1.36945 * 120.00299 * 107.46405 * 17 15 14 19 19 H 1.08005 * 119.99576 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00160 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99899 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99971 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47527 * 89.99557 * 22 20 18 24 24 H 1.48504 * 109.47019 * 209.99805 * 22 20 18 25 25 H 1.48504 * 109.46810 * 329.99745 * 22 20 18 26 26 C 1.53777 * 87.08418 * 25.43194 * 15 14 12 27 27 O 1.43745 * 107.29442 * 2.03270 * 6 5 4 28 28 H 1.09003 * 109.46836 * 298.48606 * 1 2 3 29 29 H 1.08994 * 109.47163 * 58.48871 * 1 2 3 30 30 H 1.09002 * 109.47298 * 178.49042 * 1 2 3 31 31 H 1.08996 * 110.90766 * 86.28222 * 4 2 1 32 32 H 1.09001 * 110.94010 * 322.68241 * 4 2 1 33 33 H 1.09004 * 110.48564 * 262.20686 * 5 4 2 34 34 H 1.08997 * 110.48807 * 139.56009 * 5 4 2 35 35 H 1.09004 * 109.47054 * 295.71437 * 8 6 5 36 36 H 1.09001 * 109.47037 * 55.71456 * 8 6 5 37 37 H 0.96995 * 119.99678 * 359.97438 * 11 9 8 38 38 H 1.09004 * 113.61334 * 203.66424 * 14 12 11 39 39 H 1.08997 * 113.61868 * 334.56382 * 14 12 11 40 40 H 0.97000 * 119.99874 * 287.46063 * 17 15 14 41 41 H 0.97003 * 120.00058 * 180.02562 * 21 20 18 42 42 H 1.08995 * 113.61754 * 220.01904 * 26 15 14 43 43 H 1.08998 * 113.61478 * 89.11555 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0757 -0.7894 -1.2172 5 6 3.4795 -1.2169 -0.7235 6 6 3.3839 -1.1255 0.8118 7 1 4.0853 -0.3784 1.1831 8 6 3.6935 -2.4885 1.4343 9 6 3.7010 -2.3646 2.9362 10 8 3.4800 -1.2921 3.4574 11 7 3.9523 -3.4462 3.7002 12 6 3.9590 -3.3259 5.1603 13 1 4.1616 -2.3104 5.5005 14 6 2.7389 -3.9724 5.8372 15 6 3.5554 -5.2746 5.8874 16 1 3.4400 -5.8968 4.9999 17 7 3.3895 -6.0257 7.1342 18 6 2.6664 -7.1887 7.1419 19 1 2.2187 -7.5523 6.2287 20 6 2.5087 -7.9001 8.3233 21 7 3.0547 -7.4572 9.4360 22 14 1.5230 -9.4868 8.3337 23 1 2.4259 -10.6324 8.0551 24 1 0.8902 -9.6676 9.6649 25 1 0.4692 -9.4216 7.2894 26 6 4.8152 -4.3932 5.8623 27 8 2.0384 -0.7354 1.1337 28 1 -0.3633 0.4902 0.9033 29 1 -0.3633 0.5371 -0.8761 30 1 -0.3634 -1.0273 -0.0271 31 1 2.1509 -0.1477 -2.0950 32 1 1.4551 -1.6607 -1.4264 33 1 4.2406 -0.5333 -1.0997 34 1 3.6974 -2.2393 -1.0321 35 1 2.9314 -3.2071 1.1328 36 1 4.6706 -2.8303 1.0930 37 1 4.1279 -4.3042 3.2834 38 1 2.5152 -3.5591 6.8207 39 1 1.8620 -4.0314 5.1925 40 1 3.7919 -5.6994 7.9542 41 1 2.9449 -7.9546 10.2616 42 1 5.6146 -4.7918 5.2377 43 1 5.1592 -4.0949 6.8526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020545322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:16 Heat of formation + Delta-G solvation = -84.341593 kcal Electronic energy + Delta-G solvation = -22037.525754 eV Core-core repulsion = 18696.201218 eV Total energy + Delta-G solvation = -3341.324536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30028 -40.37635 -39.09395 -35.75055 -34.19824 -33.61396 -33.11590 -31.82246 -30.01888 -26.63246 -26.48166 -25.53569 -23.80021 -22.44507 -22.00015 -21.39492 -20.35286 -19.16542 -18.30118 -17.39117 -17.04726 -16.91572 -16.66099 -15.96816 -15.78968 -15.55949 -15.36942 -14.86413 -14.62191 -14.21003 -13.89624 -13.66218 -13.47104 -13.33593 -13.25480 -12.93210 -12.84163 -12.76485 -12.59841 -12.45691 -12.16513 -12.03829 -11.83547 -11.73780 -11.71789 -11.50850 -11.19657 -10.84608 -10.78298 -10.55412 -9.96880 -8.99529 -7.95064 -5.23847 1.47776 1.49460 1.57824 1.72314 2.22316 2.56569 2.92475 3.36441 3.62514 3.71551 3.74078 3.84443 3.94643 3.96197 4.00952 4.07022 4.29099 4.32433 4.32749 4.40567 4.58291 4.60211 4.63966 4.75924 4.81154 4.90106 4.93072 4.96807 4.97176 5.09547 5.12886 5.17542 5.21430 5.26213 5.28867 5.29527 5.50786 5.74060 6.15010 6.26984 6.65493 7.32962 7.36527 8.09447 8.32089 9.28367 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.002855 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.358139 B = 9803.725754 C =10218.280544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 H 0.066 0.934 4 C -0.144 4.144 5 C -0.145 4.145 6 C 0.085 3.915 7 H 0.055 0.945 8 C -0.133 4.133 9 C 0.508 3.492 10 O -0.581 6.581 11 N -0.701 5.701 12 C 0.134 3.866 13 H 0.084 0.916 14 C -0.175 4.175 15 C 0.155 3.845 16 H 0.085 0.915 17 N -0.728 5.728 18 C -0.244 4.244 19 H 0.079 0.921 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.973 3.027 23 H -0.284 1.284 24 H -0.298 1.298 25 H -0.269 1.269 26 C -0.141 4.141 27 O -0.394 6.394 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.143 0.857 37 H 0.415 0.585 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.374 0.626 41 H 0.251 0.749 42 H 0.089 0.911 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 12.353 -26.076 28.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.002 4.002 3 H 0.084 0.916 4 C -0.181 4.181 5 C -0.183 4.183 6 C 0.026 3.974 7 H 0.073 0.927 8 C -0.172 4.172 9 C 0.296 3.704 10 O -0.460 6.460 11 N -0.353 5.353 12 C 0.027 3.973 13 H 0.102 0.898 14 C -0.217 4.217 15 C 0.045 3.955 16 H 0.103 0.897 17 N -0.365 5.365 18 C -0.376 4.376 19 H 0.097 0.903 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.802 3.198 23 H -0.211 1.211 24 H -0.225 1.225 25 H -0.194 1.194 26 C -0.180 4.180 27 O -0.315 6.315 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.161 0.839 37 H 0.252 0.748 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.206 0.794 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.908 12.892 -25.576 28.705 hybrid contribution -0.379 -0.870 0.938 1.335 sum 1.529 12.022 -24.637 27.457 Atomic orbital electron populations 1.21776 0.92903 1.02770 1.02705 1.23357 0.95709 0.95563 0.85583 0.91647 1.23175 0.96049 1.00958 0.97964 1.23023 0.98281 1.04657 0.92293 1.22551 0.84670 0.94757 0.95377 0.92731 1.22027 1.06870 0.99231 0.89100 1.21336 0.74789 0.83214 0.91019 1.90699 1.49839 1.29404 1.76078 1.45649 1.71752 1.12546 1.05386 1.21442 0.96669 0.98757 0.80418 0.89833 1.24163 0.97793 1.00123 0.99665 1.21940 0.94164 0.89902 0.89445 0.89716 1.42610 1.61743 1.25296 1.06856 1.19721 1.23950 0.99216 0.94722 0.90318 1.25595 1.03022 1.02869 0.95499 1.69820 1.51073 1.41742 0.99530 0.85139 0.78385 0.79707 0.76531 1.21138 1.22505 1.19417 1.23649 0.97720 0.95708 1.00926 1.89029 1.28308 1.73791 1.40332 0.93427 0.88898 0.92249 0.88353 0.90058 0.89120 0.88080 0.86680 0.83937 0.74835 0.91590 0.93009 0.79437 0.94039 0.89212 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.66 71.98 0.70 -1.61 16 2 C 0.05 0.98 3.98 31.28 0.12 1.10 16 3 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.14 -1.61 6.59 31.90 0.21 -1.40 16 5 C -0.15 -1.54 6.64 31.59 0.21 -1.33 16 6 C 0.08 1.62 2.93 30.97 0.09 1.71 16 7 H 0.05 1.23 7.96 -2.39 -0.02 1.21 16 8 C -0.13 -2.20 5.19 29.85 0.16 -2.04 16 9 C 0.51 13.60 7.73 87.65 0.68 14.28 16 10 O -0.58 -21.51 15.10 8.69 0.13 -21.38 16 11 N -0.70 -17.28 5.26 -440.03 -2.32 -19.59 16 12 C 0.13 4.12 4.32 45.52 0.20 4.32 16 13 H 0.08 2.82 7.46 -2.39 -0.02 2.80 16 14 C -0.18 -6.47 7.68 31.12 0.24 -6.23 16 15 C 0.16 5.93 4.35 45.52 0.20 6.13 16 16 H 0.08 3.03 8.10 -2.39 -0.02 3.01 16 17 N -0.73 -36.57 5.40 -320.45 -1.73 -38.30 16 18 C -0.24 -13.48 9.97 84.03 0.84 -12.64 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 20 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 21 N -0.97 -59.80 13.06 21.65 0.28 -59.51 16 22 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 C -0.14 -4.34 7.58 31.12 0.24 -4.11 16 27 O -0.39 -10.27 10.24 -137.26 -1.41 -11.67 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.86 8.05 -2.39 -0.02 0.84 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.68 7.70 -2.39 -0.02 0.66 16 35 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.41 7.61 8.70 -92.71 -0.81 6.80 16 38 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.37 20.27 7.92 -92.71 -0.73 19.54 16 41 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 42 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.08 2.76 8.12 -2.39 -0.02 2.74 16 Total: -1.00 -75.44 351.76 0.78 -74.65 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.54 Total: 33.58 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 4.34 Total: -5.83 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -3.76 Total: -117.40 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -1.27 Total: -33.05 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -75.44 0.78 -74.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020545322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.689 kcal (2) G-P(sol) polarization free energy of solvation -75.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds