Wall clock time and date at job start Tue Mar 31 2020 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 110.27609 * 2 1 4 4 C 1.54943 * 110.30892 * 122.19867 * 2 1 3 5 5 C 1.55305 * 100.94166 * 155.35809 * 4 2 1 6 6 C 1.54377 * 102.25264 * 325.86368 * 5 4 2 7 7 H 1.08998 * 109.83006 * 261.84515 * 6 5 4 8 8 C 1.53000 * 109.90569 * 140.91247 * 6 5 4 9 9 C 1.50699 * 109.47051 * 175.36769 * 8 6 5 10 10 O 1.21289 * 120.00228 * 359.97438 * 9 8 6 11 11 N 1.34778 * 119.99983 * 180.02562 * 9 8 6 12 12 C 1.46496 * 120.00124 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.85033 * 334.66710 * 12 11 9 14 14 C 1.53783 * 113.61574 * 105.85532 * 12 11 9 15 15 C 1.54052 * 86.98179 * 89.16351 * 14 12 11 16 16 H 1.09002 * 113.69341 * 270.87484 * 15 14 12 17 17 N 1.46502 * 113.62006 * 139.98115 * 15 14 12 18 18 C 1.36941 * 120.00239 * 107.50171 * 17 15 14 19 19 H 1.07997 * 119.99644 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99850 * 179.97438 * 18 17 15 21 21 N 1.31615 * 119.99879 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00272 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46888 * 90.00032 * 22 20 18 24 24 H 1.48499 * 109.47071 * 209.99660 * 22 20 18 25 25 H 1.48499 * 109.46844 * 330.00227 * 22 20 18 26 26 C 1.53780 * 87.07945 * 25.43370 * 15 14 12 27 27 O 1.43242 * 107.58755 * 21.35688 * 6 5 4 28 28 H 1.08994 * 109.47357 * 180.64066 * 1 2 3 29 29 H 1.08998 * 109.46865 * 300.63827 * 1 2 3 30 30 H 1.08994 * 109.46919 * 60.63652 * 1 2 3 31 31 H 1.09001 * 111.12708 * 273.27388 * 4 2 1 32 32 H 1.09000 * 111.12801 * 37.43634 * 4 2 1 33 33 H 1.09007 * 110.84564 * 207.67259 * 5 4 2 34 34 H 1.09000 * 111.02023 * 84.13524 * 5 4 2 35 35 H 1.08996 * 109.47238 * 295.36595 * 8 6 5 36 36 H 1.08998 * 109.47094 * 55.36883 * 8 6 5 37 37 H 0.97001 * 119.99814 * 359.97438 * 11 9 8 38 38 H 1.09004 * 113.62041 * 203.66439 * 14 12 11 39 39 H 1.08993 * 113.61559 * 334.57357 * 14 12 11 40 40 H 0.97003 * 119.99781 * 287.50376 * 17 15 14 41 41 H 0.97000 * 120.00129 * 180.02562 * 21 20 18 42 42 H 1.08999 * 113.61488 * 220.02777 * 26 15 14 43 43 H 1.09000 * 113.61688 * 89.12020 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0678 -0.7743 1.2296 5 6 3.4700 -1.2033 0.7177 6 6 3.2112 -1.4413 -0.7855 7 1 3.0624 -2.5050 -0.9711 8 6 4.3986 -0.9326 -1.6054 9 6 4.1876 -1.2715 -3.0585 10 8 3.1864 -1.8622 -3.4043 11 7 5.1121 -0.9191 -3.9738 12 6 4.9068 -1.2481 -5.3865 13 1 4.2557 -2.1104 -5.5300 14 6 4.5232 -0.0360 -6.2518 15 6 6.0325 0.1847 -6.4675 16 1 6.4944 0.8212 -5.7127 17 7 6.3782 0.5812 -7.8348 18 6 6.7661 1.8681 -8.0973 19 1 6.8175 2.5905 -7.2962 20 6 7.0941 2.2435 -9.3928 21 7 7.4674 3.4802 -9.6449 22 14 7.0058 0.9936 -10.7783 23 1 5.6486 1.0172 -11.3804 24 1 8.0133 1.3323 -11.8153 25 1 7.2854 -0.3620 -10.2404 26 6 6.2108 -1.3188 -6.1984 27 8 2.0285 -0.7157 -1.1413 28 1 -0.3634 -1.0275 0.0115 29 1 -0.3633 0.5237 0.8842 30 1 -0.3633 0.5039 -0.8956 31 1 2.1497 -0.1224 2.0994 32 1 1.4471 -1.6429 1.4492 33 1 3.7966 -2.1218 1.2054 34 1 4.2001 -0.4074 0.8645 35 1 4.4815 0.1483 -1.4928 36 1 5.3142 -1.4061 -1.2511 37 1 5.9131 -0.4470 -3.6972 38 1 3.9863 -0.3019 -7.1624 39 1 4.0391 0.7643 -5.6922 40 1 6.3323 -0.0678 -8.5543 41 1 7.6963 3.7427 -10.5502 42 1 7.0882 -1.5535 -5.5957 43 1 6.1345 -1.9349 -7.0944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020545323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:19 Heat of formation + Delta-G solvation = -57.091450 kcal Electronic energy + Delta-G solvation = -22082.880090 eV Core-core repulsion = 18742.737209 eV Total energy + Delta-G solvation = -3340.142881 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.32008 -39.44443 -37.85982 -34.08183 -33.10127 -32.53279 -32.36766 -30.51144 -29.27566 -25.30695 -25.19804 -24.24445 -22.02501 -21.73848 -21.33810 -20.22458 -19.13085 -17.49977 -17.28385 -17.01251 -16.08140 -15.81645 -14.99281 -14.82968 -14.59616 -14.35383 -14.10334 -13.64372 -13.32224 -13.14371 -12.92714 -12.61997 -12.30271 -12.28295 -12.20918 -11.97955 -11.96985 -11.79449 -11.36708 -11.17008 -11.03679 -10.98703 -10.84886 -10.36683 -10.20370 -9.87799 -9.70459 -9.61708 -9.57070 -8.92710 -8.74920 -7.28190 -5.79813 -3.15467 2.77803 3.23688 3.36463 3.39704 3.44504 3.57827 4.16480 4.42014 4.45535 4.56975 4.73235 4.85122 4.91519 4.95333 5.08269 5.10150 5.18568 5.23016 5.29517 5.30883 5.38455 5.41295 5.43396 5.49943 5.61263 5.72232 5.77726 5.79986 5.92915 5.95205 6.03621 6.14160 6.21663 6.50007 6.56262 6.63643 6.97595 7.00690 7.66099 7.96183 8.38954 8.40410 9.17540 9.90261 10.10062 11.38413 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033120 B = 0.002865 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.194956 B = 9771.754344 C = 9996.652809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.069 3.931 3 H 0.068 0.932 4 C -0.151 4.151 5 C -0.153 4.153 6 C 0.099 3.901 7 H 0.086 0.914 8 C -0.154 4.154 9 C 0.515 3.485 10 O -0.531 6.531 11 N -0.712 5.712 12 C 0.118 3.882 13 H 0.094 0.906 14 C -0.176 4.176 15 C 0.173 3.827 16 H 0.081 0.919 17 N -0.737 5.737 18 C -0.249 4.249 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.933 5.933 22 Si 0.885 3.115 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.162 4.162 27 O -0.356 6.356 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.399 0.601 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.067 0.933 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 -10.779 23.572 27.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.012 3.988 3 H 0.086 0.914 4 C -0.189 4.189 5 C -0.191 4.191 6 C 0.040 3.960 7 H 0.104 0.896 8 C -0.194 4.194 9 C 0.301 3.699 10 O -0.406 6.406 11 N -0.363 5.363 12 C 0.013 3.987 13 H 0.112 0.888 14 C -0.218 4.218 15 C 0.061 3.939 16 H 0.099 0.901 17 N -0.377 5.377 18 C -0.379 4.379 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.580 5.580 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.202 4.202 27 O -0.275 6.275 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.233 0.767 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.375 -10.936 23.095 26.891 hybrid contribution 0.544 -0.430 -0.818 1.072 sum -7.831 -11.366 22.276 26.206 Atomic orbital electron populations 1.21866 0.93827 1.02766 1.02323 1.22989 0.95039 0.95634 0.85163 0.91425 1.23316 0.96126 1.00929 0.98520 1.23203 0.97957 1.02804 0.95116 1.22417 0.84694 0.96913 0.91956 0.89604 1.22146 1.00225 1.04020 0.93053 1.20458 0.82977 0.78836 0.87634 1.90717 1.27657 1.40718 1.81547 1.45736 1.23597 1.59836 1.07154 1.21738 0.98448 0.99074 0.79473 0.88759 1.24300 1.01312 0.97121 0.99103 1.21660 0.92266 0.91817 0.88146 0.90061 1.42757 1.80914 1.10258 1.03728 1.19130 1.37605 0.86179 0.94944 0.89180 1.24699 1.01192 0.96109 0.97118 1.69701 1.51760 1.16406 1.20175 0.86541 0.77645 0.81322 0.82977 1.21002 1.21702 1.20268 1.23865 0.96296 1.00360 0.99684 1.88654 1.41589 1.64295 1.33006 0.91974 0.91491 0.91743 0.90041 0.90279 0.89892 0.90218 0.88418 0.88028 0.76652 0.89804 0.91986 0.80403 0.93010 0.91478 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.62 37.16 0.36 -0.89 16 2 C 0.07 0.63 4.08 -25.70 -0.10 0.53 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.15 -1.01 6.57 -24.48 -0.16 -1.17 16 5 C -0.15 -1.00 6.55 -24.79 -0.16 -1.17 16 6 C 0.10 0.99 3.04 -26.01 -0.08 0.91 16 7 H 0.09 0.95 7.95 -51.93 -0.41 0.54 16 8 C -0.15 -1.43 5.28 -27.88 -0.15 -1.58 16 9 C 0.51 7.00 7.72 -10.99 -0.08 6.92 16 10 O -0.53 -9.48 15.11 -6.85 -0.10 -9.58 16 11 N -0.71 -9.08 5.26 -53.02 -0.28 -9.36 16 12 C 0.12 1.77 4.30 -67.12 -0.29 1.48 16 13 H 0.09 1.50 7.50 -51.93 -0.39 1.11 16 14 C -0.18 -3.09 7.70 -25.77 -0.20 -3.29 16 15 C 0.17 3.22 4.37 -66.97 -0.29 2.93 16 16 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 17 N -0.74 -17.29 5.21 -52.50 -0.27 -17.56 16 18 C -0.25 -6.98 10.45 -15.06 -0.16 -7.14 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 21 N -0.93 -29.28 13.97 55.49 0.78 -28.51 16 22 Si 0.88 22.09 27.74 -169.99 -4.71 17.38 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 26 C -0.16 -2.44 7.57 -25.92 -0.20 -2.64 16 27 O -0.36 -4.58 10.05 -47.63 -0.48 -5.06 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 33 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.08 0.44 7.85 -51.93 -0.41 0.03 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.40 4.11 8.70 -40.82 -0.36 3.75 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.36 8.37 5.78 -40.82 -0.24 8.13 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 1.33 8.12 -51.93 -0.42 0.91 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -34.82 348.79 -8.73 -43.55 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.30 Total: 8.94 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.61 Total: -5.06 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.22 Total: -55.43 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.58 Total: -14.64 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.38 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.82 -8.73 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020545323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.539 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds