Wall clock time and date at job start Tue Mar 31 2020 05:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 110.27609 * 2 1 4 4 C 1.54943 * 110.30892 * 122.19867 * 2 1 3 5 5 C 1.55305 * 100.94166 * 155.35809 * 4 2 1 6 6 C 1.54377 * 102.25264 * 325.86368 * 5 4 2 7 7 H 1.08998 * 109.83006 * 261.84515 * 6 5 4 8 8 C 1.53000 * 109.90569 * 140.91247 * 6 5 4 9 9 C 1.50699 * 109.47051 * 175.36769 * 8 6 5 10 10 O 1.21289 * 120.00228 * 359.97438 * 9 8 6 11 11 N 1.34778 * 119.99983 * 180.02562 * 9 8 6 12 12 C 1.46496 * 120.00124 * 180.02562 * 11 9 8 13 13 H 1.08997 * 112.85033 * 334.66710 * 12 11 9 14 14 C 1.53783 * 113.61574 * 105.85532 * 12 11 9 15 15 C 1.54052 * 86.98179 * 89.16351 * 14 12 11 16 16 H 1.09002 * 113.69341 * 270.87484 * 15 14 12 17 17 N 1.46502 * 113.62006 * 139.98115 * 15 14 12 18 18 C 1.36941 * 120.00239 * 107.50171 * 17 15 14 19 19 H 1.07997 * 119.99644 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99850 * 179.97438 * 18 17 15 21 21 N 1.31615 * 119.99879 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00272 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46888 * 90.00032 * 22 20 18 24 24 H 1.48499 * 109.47071 * 209.99660 * 22 20 18 25 25 H 1.48499 * 109.46844 * 330.00227 * 22 20 18 26 26 C 1.53780 * 87.07945 * 25.43370 * 15 14 12 27 27 O 1.43242 * 107.58755 * 21.35688 * 6 5 4 28 28 H 1.08994 * 109.47357 * 180.64066 * 1 2 3 29 29 H 1.08998 * 109.46865 * 300.63827 * 1 2 3 30 30 H 1.08994 * 109.46919 * 60.63652 * 1 2 3 31 31 H 1.09001 * 111.12708 * 273.27388 * 4 2 1 32 32 H 1.09000 * 111.12801 * 37.43634 * 4 2 1 33 33 H 1.09007 * 110.84564 * 207.67259 * 5 4 2 34 34 H 1.09000 * 111.02023 * 84.13524 * 5 4 2 35 35 H 1.08996 * 109.47238 * 295.36595 * 8 6 5 36 36 H 1.08998 * 109.47094 * 55.36883 * 8 6 5 37 37 H 0.97001 * 119.99814 * 359.97438 * 11 9 8 38 38 H 1.09004 * 113.62041 * 203.66439 * 14 12 11 39 39 H 1.08993 * 113.61559 * 334.57357 * 14 12 11 40 40 H 0.97003 * 119.99781 * 287.50376 * 17 15 14 41 41 H 0.97000 * 120.00129 * 180.02562 * 21 20 18 42 42 H 1.08999 * 113.61488 * 220.02777 * 26 15 14 43 43 H 1.09000 * 113.61688 * 89.12020 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0678 -0.7743 1.2296 5 6 3.4700 -1.2033 0.7177 6 6 3.2112 -1.4413 -0.7855 7 1 3.0624 -2.5050 -0.9711 8 6 4.3986 -0.9326 -1.6054 9 6 4.1876 -1.2715 -3.0585 10 8 3.1864 -1.8622 -3.4043 11 7 5.1121 -0.9191 -3.9738 12 6 4.9068 -1.2481 -5.3865 13 1 4.2557 -2.1104 -5.5300 14 6 4.5232 -0.0360 -6.2518 15 6 6.0325 0.1847 -6.4675 16 1 6.4944 0.8212 -5.7127 17 7 6.3782 0.5812 -7.8348 18 6 6.7661 1.8681 -8.0973 19 1 6.8175 2.5905 -7.2962 20 6 7.0941 2.2435 -9.3928 21 7 7.4674 3.4802 -9.6449 22 14 7.0058 0.9936 -10.7783 23 1 5.6486 1.0172 -11.3804 24 1 8.0133 1.3323 -11.8153 25 1 7.2854 -0.3620 -10.2404 26 6 6.2108 -1.3188 -6.1984 27 8 2.0285 -0.7157 -1.1413 28 1 -0.3634 -1.0275 0.0115 29 1 -0.3633 0.5237 0.8842 30 1 -0.3633 0.5039 -0.8956 31 1 2.1497 -0.1224 2.0994 32 1 1.4471 -1.6429 1.4492 33 1 3.7966 -2.1218 1.2054 34 1 4.2001 -0.4074 0.8645 35 1 4.4815 0.1483 -1.4928 36 1 5.3142 -1.4061 -1.2511 37 1 5.9131 -0.4470 -3.6972 38 1 3.9863 -0.3019 -7.1624 39 1 4.0391 0.7643 -5.6922 40 1 6.3323 -0.0678 -8.5543 41 1 7.6963 3.7427 -10.5502 42 1 7.0882 -1.5535 -5.5957 43 1 6.1345 -1.9349 -7.0944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020545323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:18 Heat of formation + Delta-G solvation = -81.817346 kcal Electronic energy + Delta-G solvation = -22083.952285 eV Core-core repulsion = 18742.737209 eV Total energy + Delta-G solvation = -3341.215076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.31834 -40.41663 -39.12492 -35.83962 -34.19956 -33.64184 -33.14083 -32.37379 -30.05280 -26.64273 -26.51879 -25.47961 -23.62181 -22.39119 -22.27678 -21.11543 -20.63816 -19.42831 -18.14020 -17.92842 -17.09275 -16.89745 -16.51725 -16.17731 -15.81005 -15.54022 -15.07088 -14.81088 -14.38506 -14.26956 -14.15535 -13.99787 -13.71865 -13.46502 -13.34475 -12.92499 -12.90316 -12.67191 -12.60990 -12.51597 -12.08631 -11.99346 -11.86550 -11.81038 -11.71070 -11.62295 -11.25393 -10.89800 -10.78612 -10.42860 -9.97831 -9.28686 -8.03370 -5.36632 1.37989 1.41520 1.48525 1.72813 2.22756 2.48101 2.91339 3.26625 3.58626 3.61726 3.71500 3.77144 3.80951 3.88550 3.93618 4.20222 4.23527 4.25744 4.28800 4.43714 4.52383 4.62889 4.63337 4.73445 4.82749 4.86642 4.90160 4.93803 4.95111 5.08891 5.11242 5.14221 5.16464 5.24771 5.27820 5.35377 5.69859 5.76558 6.21853 6.28958 6.64882 7.06889 7.36512 7.83809 8.02525 9.18080 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033120 B = 0.002865 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.194956 B = 9771.754344 C = 9996.652809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 H 0.071 0.929 4 C -0.145 4.145 5 C -0.143 4.143 6 C 0.089 3.911 7 H 0.066 0.934 8 C -0.145 4.145 9 C 0.509 3.491 10 O -0.579 6.579 11 N -0.704 5.704 12 C 0.133 3.867 13 H 0.088 0.912 14 C -0.177 4.177 15 C 0.157 3.843 16 H 0.081 0.919 17 N -0.742 5.742 18 C -0.234 4.234 19 H 0.058 0.942 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.955 3.045 23 H -0.283 1.283 24 H -0.296 1.296 25 H -0.247 1.247 26 C -0.139 4.139 27 O -0.398 6.398 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.414 0.586 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.367 0.633 41 H 0.258 0.742 42 H 0.092 0.908 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 -12.614 25.443 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.000 4.000 3 H 0.088 0.912 4 C -0.182 4.182 5 C -0.180 4.180 6 C 0.031 3.969 7 H 0.084 0.916 8 C -0.185 4.185 9 C 0.298 3.702 10 O -0.458 6.458 11 N -0.356 5.356 12 C 0.026 3.974 13 H 0.106 0.894 14 C -0.219 4.219 15 C 0.047 3.953 16 H 0.099 0.901 17 N -0.383 5.383 18 C -0.365 4.365 19 H 0.076 0.924 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.782 3.218 23 H -0.209 1.209 24 H -0.223 1.223 25 H -0.172 1.172 26 C -0.179 4.179 27 O -0.318 6.318 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.157 0.843 37 H 0.251 0.749 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.602 -12.808 25.034 29.130 hybrid contribution 0.230 0.196 -1.302 1.337 sum -7.372 -12.612 23.732 27.868 Atomic orbital electron populations 1.21887 0.93778 1.02452 1.02605 1.23217 0.95287 0.95904 0.85565 0.91151 1.23304 0.96003 1.00930 0.97999 1.23193 0.98241 1.04282 0.92306 1.22555 0.84198 0.95693 0.94486 0.91583 1.22214 1.01572 1.05099 0.89625 1.21288 0.81996 0.77603 0.89353 1.90700 1.29620 1.42937 1.82545 1.45688 1.24148 1.59627 1.06146 1.21473 0.98146 0.97305 0.80495 0.89362 1.24227 1.00110 0.98136 0.99448 1.21987 0.92867 0.94504 0.85911 0.90071 1.42760 1.81081 1.08563 1.05861 1.19114 1.35792 0.87564 0.94040 0.92356 1.25532 1.01944 0.98185 1.00043 1.69882 1.54086 1.18881 1.20625 0.85412 0.77251 0.79990 0.79159 1.20903 1.22255 1.17164 1.23679 0.97170 0.96852 1.00171 1.88620 1.42973 1.64921 1.35270 0.92614 0.89079 0.93515 0.87793 0.90364 0.88159 0.88456 0.87103 0.84261 0.74932 0.90577 0.93322 0.79947 0.93361 0.88927 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.62 71.98 0.69 -1.75 16 2 C 0.06 1.00 4.08 31.26 0.13 1.13 16 3 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.14 -1.58 6.57 32.05 0.21 -1.37 16 5 C -0.14 -1.44 6.55 31.85 0.21 -1.23 16 6 C 0.09 1.66 3.04 31.06 0.09 1.75 16 7 H 0.07 1.45 7.95 -2.39 -0.02 1.43 16 8 C -0.15 -2.36 5.28 29.85 0.16 -2.20 16 9 C 0.51 13.22 7.72 87.66 0.68 13.89 16 10 O -0.58 -20.78 15.11 8.80 0.13 -20.64 16 11 N -0.70 -16.59 5.26 -440.03 -2.32 -18.91 16 12 C 0.13 3.75 4.30 45.52 0.20 3.94 16 13 H 0.09 2.70 7.50 -2.39 -0.02 2.68 16 14 C -0.18 -6.11 7.70 31.21 0.24 -5.87 16 15 C 0.16 5.63 4.37 45.61 0.20 5.83 16 16 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 17 N -0.74 -33.99 5.21 -320.00 -1.67 -35.66 16 18 C -0.23 -13.26 10.45 84.03 0.88 -12.38 16 19 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 20 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 21 N -0.98 -63.29 13.97 21.65 0.30 -62.99 16 22 Si 0.95 45.47 27.74 68.60 1.90 47.37 16 23 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 26 C -0.14 -3.79 7.57 31.12 0.24 -3.56 16 27 O -0.40 -10.21 10.05 -137.12 -1.38 -11.59 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.87 8.06 -2.39 -0.02 0.85 16 33 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.10 0.66 7.85 -2.39 -0.02 0.64 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.41 7.37 8.70 -92.71 -0.81 6.57 16 38 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 40 H 0.37 16.11 5.78 -92.71 -0.54 15.58 16 41 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 42 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.09 2.54 8.12 -2.39 -0.02 2.52 16 Total: -1.00 -78.35 348.79 0.96 -77.39 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -0.40 Total: 30.25 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 4.38 Total: -5.23 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -3.68 Total: -117.55 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -1.24 Total: -32.23 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.37 kcal Total: -78.35 0.96 -77.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020545323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.427 kcal (2) G-P(sol) polarization free energy of solvation -78.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds