Wall clock time and date at job start Tue Mar 31 2020 05:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47021 * 2 1 4 4 C 1.50695 * 109.47513 * 239.99233 * 2 1 3 5 5 O 1.21279 * 120.00505 * 240.00681 * 4 2 1 6 6 N 1.34782 * 119.99580 * 59.99682 * 4 2 1 7 7 C 1.46502 * 119.99826 * 180.02562 * 6 4 2 8 8 H 1.09003 * 112.84905 * 334.67032 * 7 6 4 9 9 C 1.53783 * 113.61536 * 105.86501 * 7 6 4 10 10 C 1.54053 * 86.98156 * 89.16089 * 9 7 6 11 11 H 1.08997 * 113.61359 * 270.88094 * 10 9 7 12 12 N 1.46508 * 113.69153 * 139.98998 * 10 9 7 13 13 C 1.36934 * 119.99609 * 107.46924 * 12 10 9 14 14 H 1.08003 * 120.00217 * 359.97438 * 13 12 10 15 15 C 1.38817 * 119.99958 * 179.97438 * 13 12 10 16 16 N 1.31609 * 120.00098 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99619 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47181 * 89.99902 * 17 15 13 19 19 H 1.48496 * 109.46965 * 209.99699 * 17 15 13 20 20 H 1.48498 * 109.47298 * 329.99858 * 17 15 13 21 21 C 1.53773 * 113.61687 * 203.47662 * 7 6 4 22 22 C 1.53001 * 109.47004 * 119.99411 * 2 1 3 23 23 H 1.08995 * 110.27901 * 59.36101 * 22 2 1 24 24 C 1.54951 * 110.39210 * 297.21754 * 22 2 1 25 25 C 1.55312 * 100.94225 * 204.59612 * 24 22 2 26 26 C 1.54380 * 102.25056 * 34.13333 * 25 24 22 27 27 O 1.43245 * 107.59000 * 338.64209 * 26 25 24 28 28 H 1.09007 * 109.47528 * 300.00676 * 1 2 3 29 29 H 1.09005 * 109.47113 * 60.00718 * 1 2 3 30 30 H 1.08999 * 109.47370 * 180.02562 * 1 2 3 31 31 H 0.96991 * 120.00445 * 0.02562 * 6 4 2 32 32 H 1.08997 * 113.61397 * 203.66939 * 9 7 6 33 33 H 1.08997 * 113.61269 * 334.57103 * 9 7 6 34 34 H 0.96999 * 119.99829 * 287.46918 * 12 10 9 35 35 H 0.97008 * 120.00229 * 180.02562 * 16 15 13 36 36 H 1.09003 * 113.61291 * 25.42853 * 21 7 6 37 37 H 1.09002 * 113.62101 * 156.25102 * 21 7 6 38 38 H 1.09000 * 111.12523 * 322.51641 * 24 22 2 39 39 H 1.09000 * 111.12500 * 86.63759 * 24 22 2 40 40 H 1.08999 * 110.84840 * 275.94257 * 25 24 22 41 41 H 1.08999 * 110.84966 * 152.32055 * 25 24 22 42 42 H 1.08996 * 109.83192 * 219.13077 * 26 25 24 43 43 H 1.09002 * 109.83458 * 98.15431 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7067 -0.2502 -2.4545 7 6 2.1947 -0.9412 -3.6506 8 1 3.1145 -1.4982 -3.4720 9 6 1.1114 -1.7572 -4.3756 10 6 0.7995 -0.4786 -5.1765 11 1 0.0550 0.1619 -4.7037 12 7 0.5208 -0.7249 -6.5935 13 6 -0.7581 -0.6108 -7.0696 14 1 -1.5613 -0.3396 -6.4003 15 6 -1.0222 -0.8436 -8.4123 16 7 -2.2514 -0.7344 -8.8698 17 14 0.3669 -1.3133 -9.5696 18 1 0.5098 -2.7911 -9.5973 19 1 0.0606 -0.8199 -10.9364 20 1 1.6344 -0.7022 -9.0952 21 6 2.2492 -0.0463 -4.8999 22 6 2.0399 -0.7211 1.2493 23 1 1.6746 -1.7479 1.2685 24 6 1.5936 0.0323 2.5276 25 6 2.6823 -0.4267 3.5357 26 6 3.9299 -0.5535 2.6352 27 8 3.4758 -0.7021 1.2848 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.1493 0.5386 -2.5436 32 1 1.5103 -2.5679 -4.9853 33 1 0.2969 -2.0764 -3.7255 34 1 1.2421 -0.9688 -7.1944 35 1 -2.4361 -0.8974 -9.8081 36 1 2.3526 1.0147 -4.6728 37 1 2.9596 -0.3893 -5.6521 38 1 1.6259 1.1117 2.3789 39 1 0.6018 -0.2884 2.8466 40 1 2.4222 -1.3893 3.9760 41 1 2.8370 0.3257 4.3090 42 1 4.5102 -1.4282 2.9285 43 1 4.5420 0.3442 2.7228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020564680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:25 Heat of formation + Delta-G solvation = -55.446818 kcal Electronic energy + Delta-G solvation = -22388.510088 eV Core-core repulsion = 19048.438524 eV Total energy + Delta-G solvation = -3340.071564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.43991 -39.34130 -37.87690 -34.31867 -33.99754 -32.41701 -32.11318 -30.40776 -28.27004 -25.31855 -25.19011 -24.31837 -22.45776 -21.87123 -21.49664 -20.02540 -19.13880 -17.54165 -17.37993 -16.60713 -16.33107 -15.70137 -15.33592 -14.94268 -14.62921 -14.44891 -13.94917 -13.57108 -13.41745 -13.21087 -12.69096 -12.64456 -12.53446 -12.22747 -12.12099 -11.97899 -11.91090 -11.81124 -11.41906 -11.30010 -11.08852 -10.99066 -10.85100 -10.36880 -10.20557 -9.87617 -9.63728 -9.57716 -9.56514 -8.93092 -8.74333 -7.28752 -5.80405 -3.15983 2.77744 3.21594 3.36293 3.39509 3.44312 3.57514 4.14543 4.35734 4.56575 4.56902 4.65183 4.76890 4.88423 4.96601 4.97465 5.10377 5.15538 5.24452 5.29509 5.35768 5.41303 5.42416 5.43894 5.55428 5.56118 5.69804 5.71873 5.77197 5.80817 5.94047 6.04519 6.15155 6.21329 6.49130 6.55520 6.62220 6.90444 7.00312 7.66422 7.95465 8.38701 8.40172 9.16987 9.89778 10.09634 11.37775 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043868 B = 0.003003 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.123488 B = 9322.534522 C = 9727.188801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 H 0.101 0.899 4 C 0.519 3.481 5 O -0.528 6.528 6 N -0.710 5.710 7 C 0.118 3.882 8 H 0.095 0.905 9 C -0.176 4.176 10 C 0.173 3.827 11 H 0.081 0.919 12 N -0.737 5.737 13 C -0.249 4.249 14 H 0.090 0.910 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.885 3.115 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.276 1.276 21 C -0.163 4.163 22 C 0.103 3.897 23 H 0.076 0.924 24 C -0.152 4.152 25 C -0.156 4.156 26 C 0.048 3.952 27 O -0.363 6.363 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.399 0.601 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.950 3.958 24.525 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 H 0.119 0.881 4 C 0.305 3.695 5 O -0.403 6.403 6 N -0.361 5.361 7 C 0.013 3.987 8 H 0.113 0.887 9 C -0.218 4.218 10 C 0.061 3.939 11 H 0.099 0.901 12 N -0.376 5.376 13 C -0.379 4.379 14 H 0.108 0.892 15 C -0.191 4.191 16 N -0.580 5.580 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.202 4.202 22 C 0.045 3.955 23 H 0.094 0.906 24 C -0.190 4.190 25 C -0.194 4.194 26 C -0.029 4.029 27 O -0.282 6.282 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.233 0.767 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.321 3.265 24.352 26.279 hybrid contribution 0.513 0.044 -0.804 0.955 sum 9.834 3.309 23.548 25.732 Atomic orbital electron populations 1.21779 0.91843 1.03382 1.03266 1.21508 0.97600 1.01157 0.92957 0.88059 1.20371 0.80134 0.84739 0.84280 1.90716 1.37049 1.25986 1.86523 1.45709 1.53506 1.31743 1.05156 1.21745 0.98311 0.95198 0.83479 0.88732 1.24301 0.98097 1.00144 0.99259 1.21655 0.92911 0.93832 0.85453 0.90069 1.42755 1.07287 1.83194 1.04406 1.19126 0.84799 1.40195 0.93742 0.89176 1.24698 0.96053 1.01564 0.96794 1.69700 1.18000 1.55691 1.14634 0.86544 0.82352 0.78533 0.81077 1.21015 1.21706 1.20256 1.23865 1.00613 0.99308 0.96457 1.22711 0.81624 0.98651 0.92556 0.90568 1.23354 0.99639 1.01271 0.94714 1.23120 0.95209 1.02452 0.98609 1.23117 0.96288 1.01143 0.82390 1.88587 1.19796 1.94592 1.25184 0.91204 0.91121 0.91621 0.76674 0.89803 0.92021 0.80396 0.93011 0.91474 0.89335 0.90138 0.89650 0.90509 0.90082 0.91604 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.89 37.16 0.33 -0.78 16 2 C -0.11 -1.09 2.50 -91.78 -0.23 -1.32 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.52 7.18 7.03 -10.99 -0.08 7.10 16 5 O -0.53 -9.52 15.01 -11.23 -0.17 -9.69 16 6 N -0.71 -9.12 5.16 -53.02 -0.27 -9.39 16 7 C 0.12 1.77 4.29 -67.12 -0.29 1.48 16 8 H 0.09 1.52 7.50 -51.93 -0.39 1.13 16 9 C -0.18 -3.01 7.70 -25.77 -0.20 -3.21 16 10 C 0.17 3.19 4.37 -66.97 -0.29 2.90 16 11 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 12 N -0.74 -17.15 5.21 -52.49 -0.27 -17.43 16 13 C -0.25 -6.93 10.45 -15.06 -0.16 -7.09 16 14 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 15 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 16 N -0.93 -29.12 13.97 55.49 0.78 -28.35 16 17 Si 0.88 22.01 27.74 -169.99 -4.71 17.30 16 18 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 21 C -0.16 -2.46 7.57 -25.92 -0.20 -2.66 16 22 C 0.10 1.06 2.46 -25.70 -0.06 0.99 16 23 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 24 C -0.15 -1.03 5.56 -24.48 -0.14 -1.16 16 25 C -0.16 -1.00 7.02 -24.78 -0.17 -1.18 16 26 C 0.05 0.42 7.79 37.88 0.30 0.72 16 27 O -0.36 -4.65 10.09 -52.02 -0.52 -5.17 16 28 H 0.07 0.39 7.29 -51.92 -0.38 0.01 16 29 H 0.07 0.51 7.57 -51.93 -0.39 0.12 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.40 4.19 8.12 -40.82 -0.33 3.86 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.36 8.33 5.79 -40.82 -0.24 8.09 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.34 8.12 -51.93 -0.42 0.92 16 38 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 39 H 0.08 0.46 8.05 -51.93 -0.42 0.04 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -34.48 345.40 -8.48 -42.96 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.23 Total: 8.73 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.28 Total: -4.16 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.23 Total: -55.17 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.69 Total: -14.87 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.48 -8.48 -42.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020564680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.485 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds