Wall clock time and date at job start Tue Mar 31 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47021 * 2 1 4 4 C 1.50695 * 109.47513 * 239.99233 * 2 1 3 5 5 O 1.21279 * 120.00505 * 240.00681 * 4 2 1 6 6 N 1.34782 * 119.99580 * 59.99682 * 4 2 1 7 7 C 1.46502 * 119.99826 * 180.02562 * 6 4 2 8 8 H 1.09003 * 112.84905 * 334.67032 * 7 6 4 9 9 C 1.53783 * 113.61536 * 105.86501 * 7 6 4 10 10 C 1.54053 * 86.98156 * 89.16089 * 9 7 6 11 11 H 1.08997 * 113.61359 * 270.88094 * 10 9 7 12 12 N 1.46508 * 113.69153 * 139.98998 * 10 9 7 13 13 C 1.36934 * 119.99609 * 107.46924 * 12 10 9 14 14 H 1.08003 * 120.00217 * 359.97438 * 13 12 10 15 15 C 1.38817 * 119.99958 * 179.97438 * 13 12 10 16 16 N 1.31609 * 120.00098 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99619 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47181 * 89.99902 * 17 15 13 19 19 H 1.48496 * 109.46965 * 209.99699 * 17 15 13 20 20 H 1.48498 * 109.47298 * 329.99858 * 17 15 13 21 21 C 1.53773 * 113.61687 * 203.47662 * 7 6 4 22 22 C 1.53001 * 109.47004 * 119.99411 * 2 1 3 23 23 H 1.08995 * 110.27901 * 59.36101 * 22 2 1 24 24 C 1.54951 * 110.39210 * 297.21754 * 22 2 1 25 25 C 1.55312 * 100.94225 * 204.59612 * 24 22 2 26 26 C 1.54380 * 102.25056 * 34.13333 * 25 24 22 27 27 O 1.43245 * 107.59000 * 338.64209 * 26 25 24 28 28 H 1.09007 * 109.47528 * 300.00676 * 1 2 3 29 29 H 1.09005 * 109.47113 * 60.00718 * 1 2 3 30 30 H 1.08999 * 109.47370 * 180.02562 * 1 2 3 31 31 H 0.96991 * 120.00445 * 0.02562 * 6 4 2 32 32 H 1.08997 * 113.61397 * 203.66939 * 9 7 6 33 33 H 1.08997 * 113.61269 * 334.57103 * 9 7 6 34 34 H 0.96999 * 119.99829 * 287.46918 * 12 10 9 35 35 H 0.97008 * 120.00229 * 180.02562 * 16 15 13 36 36 H 1.09003 * 113.61291 * 25.42853 * 21 7 6 37 37 H 1.09002 * 113.62101 * 156.25102 * 21 7 6 38 38 H 1.09000 * 111.12523 * 322.51641 * 24 22 2 39 39 H 1.09000 * 111.12500 * 86.63759 * 24 22 2 40 40 H 1.08999 * 110.84840 * 275.94257 * 25 24 22 41 41 H 1.08999 * 110.84966 * 152.32055 * 25 24 22 42 42 H 1.08996 * 109.83192 * 219.13077 * 26 25 24 43 43 H 1.09002 * 109.83458 * 98.15431 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7067 -0.2502 -2.4545 7 6 2.1947 -0.9412 -3.6506 8 1 3.1145 -1.4982 -3.4720 9 6 1.1114 -1.7572 -4.3756 10 6 0.7995 -0.4786 -5.1765 11 1 0.0550 0.1619 -4.7037 12 7 0.5208 -0.7249 -6.5935 13 6 -0.7581 -0.6108 -7.0696 14 1 -1.5613 -0.3396 -6.4003 15 6 -1.0222 -0.8436 -8.4123 16 7 -2.2514 -0.7344 -8.8698 17 14 0.3669 -1.3133 -9.5696 18 1 0.5098 -2.7911 -9.5973 19 1 0.0606 -0.8199 -10.9364 20 1 1.6344 -0.7022 -9.0952 21 6 2.2492 -0.0463 -4.8999 22 6 2.0399 -0.7211 1.2493 23 1 1.6746 -1.7479 1.2685 24 6 1.5936 0.0323 2.5276 25 6 2.6823 -0.4267 3.5357 26 6 3.9299 -0.5535 2.6352 27 8 3.4758 -0.7021 1.2848 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.1493 0.5386 -2.5436 32 1 1.5103 -2.5679 -4.9853 33 1 0.2969 -2.0764 -3.7255 34 1 1.2421 -0.9688 -7.1944 35 1 -2.4361 -0.8974 -9.8081 36 1 2.3526 1.0147 -4.6728 37 1 2.9596 -0.3893 -5.6521 38 1 1.6259 1.1117 2.3789 39 1 0.6018 -0.2884 2.8466 40 1 2.4222 -1.3893 3.9760 41 1 2.8370 0.3257 4.3090 42 1 4.5102 -1.4282 2.9285 43 1 4.5420 0.3442 2.7228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020564680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:24 Heat of formation + Delta-G solvation = -79.647107 kcal Electronic energy + Delta-G solvation = -22389.559491 eV Core-core repulsion = 19048.438524 eV Total energy + Delta-G solvation = -3341.120967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45776 -40.33264 -39.11482 -35.83899 -35.14147 -33.85579 -32.83743 -32.25456 -28.93956 -26.67602 -26.51116 -25.53885 -23.77339 -22.93579 -22.30503 -20.97956 -20.62788 -19.43143 -18.35110 -17.48146 -17.22891 -16.88906 -16.40978 -16.25193 -16.09811 -15.68487 -15.20035 -14.81337 -14.40081 -14.15949 -14.12178 -14.04066 -13.68564 -13.38629 -13.23267 -13.14345 -12.88759 -12.59970 -12.57302 -12.48434 -12.07137 -12.05104 -11.93263 -11.85513 -11.80320 -11.63248 -11.24852 -10.89085 -10.67773 -10.41885 -9.98082 -9.27887 -8.02491 -5.35504 1.38762 1.41752 1.48820 1.70299 2.18509 2.48724 2.88583 3.27563 3.55030 3.61121 3.67401 3.71973 3.80640 3.87527 4.01361 4.14609 4.17184 4.24015 4.26936 4.37612 4.49291 4.54853 4.70900 4.83284 4.85105 4.87120 4.89086 4.93260 4.96055 5.02076 5.09428 5.11574 5.16627 5.24277 5.26300 5.32846 5.69324 5.77602 6.19772 6.22664 6.62613 7.07756 7.33785 7.84806 8.03352 9.18852 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043868 B = 0.003003 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.123488 B = 9322.534522 C = 9727.188801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.122 0.878 4 C 0.513 3.487 5 O -0.575 6.575 6 N -0.701 5.701 7 C 0.132 3.868 8 H 0.086 0.914 9 C -0.174 4.174 10 C 0.158 3.842 11 H 0.083 0.917 12 N -0.742 5.742 13 C -0.233 4.233 14 H 0.060 0.940 15 C -0.065 4.065 16 N -0.984 5.984 17 Si 0.953 3.047 18 H -0.282 1.282 19 H -0.297 1.297 20 H -0.249 1.249 21 C -0.142 4.142 22 C 0.094 3.906 23 H 0.053 0.947 24 C -0.142 4.142 25 C -0.150 4.150 26 C 0.037 3.963 27 O -0.401 6.401 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.413 0.587 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.367 0.633 35 H 0.257 0.743 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.181 5.395 26.087 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.140 0.860 4 C 0.301 3.699 5 O -0.454 6.454 6 N -0.353 5.353 7 C 0.025 3.975 8 H 0.104 0.896 9 C -0.216 4.216 10 C 0.049 3.951 11 H 0.101 0.899 12 N -0.383 5.383 13 C -0.364 4.364 14 H 0.078 0.922 15 C -0.257 4.257 16 N -0.634 5.634 17 Si 0.781 3.219 18 H -0.209 1.209 19 H -0.223 1.223 20 H -0.173 1.173 21 C -0.182 4.182 22 C 0.036 3.964 23 H 0.071 0.929 24 C -0.180 4.180 25 C -0.188 4.188 26 C -0.040 4.040 27 O -0.321 6.321 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.250 0.750 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.200 0.800 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.079 0.921 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.580 4.734 25.976 28.445 hybrid contribution 0.114 -0.426 -1.171 1.251 sum 10.693 4.308 24.805 27.353 Atomic orbital electron populations 1.21806 0.89980 1.03093 1.05004 1.21559 0.98913 1.01358 0.90537 0.86034 1.21181 0.79122 0.84191 0.85392 1.90695 1.39238 1.28227 1.87213 1.45651 1.53341 1.31877 1.04456 1.21484 0.97030 0.94771 0.84212 0.89573 1.24204 0.98683 0.99549 0.99159 1.21975 0.95277 0.94815 0.83078 0.89926 1.42765 1.05554 1.83545 1.06394 1.19118 0.86039 1.37944 0.93262 0.92180 1.25511 0.98607 1.02756 0.98788 1.69877 1.20537 1.58142 1.14867 0.85433 0.80181 0.78123 0.78200 1.20893 1.22336 1.17292 1.23698 0.97660 1.00687 0.96119 1.22816 0.80873 0.98191 0.94522 0.92905 1.23351 1.00440 1.01649 0.92519 1.23125 0.93710 1.03372 0.98555 1.23317 0.97617 1.01429 0.81621 1.88548 1.21287 1.94754 1.27467 0.88349 0.90529 0.92927 0.75033 0.90528 0.92816 0.79995 0.93391 0.89199 0.88725 0.88624 0.87862 0.90320 0.87820 0.92092 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.89 71.98 0.64 -1.18 16 2 C -0.10 -1.83 2.50 -11.54 -0.03 -1.86 16 3 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.51 13.79 7.03 87.65 0.62 14.41 16 5 O -0.58 -21.03 15.01 13.03 0.20 -20.84 16 6 N -0.70 -16.92 5.16 -440.04 -2.27 -19.19 16 7 C 0.13 3.75 4.29 45.52 0.20 3.94 16 8 H 0.09 2.69 7.50 -2.39 -0.02 2.67 16 9 C -0.17 -5.84 7.70 31.21 0.24 -5.60 16 10 C 0.16 5.60 4.37 45.61 0.20 5.80 16 11 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 12 N -0.74 -33.67 5.21 -319.99 -1.67 -35.33 16 13 C -0.23 -13.03 10.45 84.04 0.88 -12.15 16 14 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 15 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 16 N -0.98 -62.83 13.97 21.65 0.30 -62.53 16 17 Si 0.95 45.29 27.74 68.60 1.90 47.19 16 18 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 20 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 21 C -0.14 -3.93 7.57 31.12 0.24 -3.70 16 22 C 0.09 1.83 2.46 31.26 0.08 1.91 16 23 H 0.05 1.24 8.12 -2.39 -0.02 1.22 16 24 C -0.14 -1.51 5.56 32.06 0.18 -1.33 16 25 C -0.15 -1.58 7.02 31.86 0.22 -1.36 16 26 C 0.04 0.61 7.79 72.45 0.56 1.18 16 27 O -0.40 -10.16 10.09 -132.93 -1.34 -11.51 16 28 H 0.10 0.73 7.29 -2.38 -0.02 0.72 16 29 H 0.08 0.90 7.57 -2.38 -0.02 0.89 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.41 7.68 8.12 -92.71 -0.75 6.93 16 32 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.37 16.02 5.79 -92.71 -0.54 15.48 16 35 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.09 2.57 8.12 -2.39 -0.02 2.55 16 38 H 0.10 0.76 8.06 -2.39 -0.02 0.74 16 39 H 0.10 0.75 8.05 -2.39 -0.02 0.73 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.89 345.40 1.26 -75.63 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.35 Total: 29.88 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 4.49 Total: -3.30 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -3.63 Total: -117.05 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.15 Total: -32.34 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Total: -76.89 1.26 -75.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020564680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.022 kcal (2) G-P(sol) polarization free energy of solvation -76.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds