Wall clock time and date at job start Tue Mar 31 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47208 * 2 1 4 4 C 1.50701 * 109.46840 * 119.99968 * 2 1 3 5 5 O 1.21284 * 120.00089 * 120.00251 * 4 2 1 6 6 N 1.34775 * 119.99923 * 300.00003 * 4 2 1 7 7 C 1.46503 * 119.99886 * 180.02562 * 6 4 2 8 8 H 1.09002 * 112.85356 * 25.32513 * 7 6 4 9 9 C 1.53780 * 113.61615 * 156.53163 * 7 6 4 10 10 C 1.53781 * 87.08339 * 139.97689 * 9 7 6 11 11 H 1.09002 * 113.61403 * 220.01433 * 10 9 7 12 12 N 1.46498 * 113.61836 * 89.11478 * 10 9 7 13 13 C 1.36937 * 120.00479 * 154.99688 * 12 10 9 14 14 H 1.08002 * 119.99018 * 0.02562 * 13 12 10 15 15 C 1.38808 * 119.99948 * 180.02562 * 13 12 10 16 16 N 1.31623 * 119.99595 * 180.02562 * 15 13 12 17 17 Si 1.86790 * 120.00333 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47357 * 89.99998 * 17 15 13 19 19 H 1.48499 * 109.47360 * 210.00269 * 17 15 13 20 20 H 1.48501 * 109.47398 * 329.99791 * 17 15 13 21 21 C 1.53790 * 113.61186 * 254.13321 * 7 6 4 22 22 C 1.52998 * 109.47055 * 239.99560 * 2 1 3 23 23 H 1.08997 * 110.67853 * 297.03466 * 22 2 1 24 24 C 1.54998 * 110.61705 * 60.00546 * 22 2 1 25 25 C 1.54817 * 102.12466 * 155.53959 * 24 22 2 26 26 C 1.54100 * 104.18606 * 339.09929 * 25 24 22 27 27 O 1.43746 * 107.29659 * 357.97343 * 26 25 24 28 28 H 1.08997 * 109.47223 * 300.00297 * 1 2 3 29 29 H 1.09007 * 109.47260 * 60.00224 * 1 2 3 30 30 H 1.09001 * 109.47208 * 180.02562 * 1 2 3 31 31 H 0.96995 * 120.00492 * 359.97438 * 6 4 2 32 32 H 1.09008 * 113.60950 * 254.52448 * 9 7 6 33 33 H 1.09000 * 113.61579 * 25.42436 * 9 7 6 34 34 H 0.97005 * 119.99856 * 335.00397 * 12 10 9 35 35 H 0.96994 * 119.99948 * 180.02562 * 16 15 13 36 36 H 1.09007 * 113.61261 * 334.56948 * 21 7 6 37 37 H 1.08996 * 113.61331 * 105.46426 * 21 7 6 38 38 H 1.09002 * 110.90913 * 37.32174 * 24 22 2 39 39 H 1.08997 * 110.90321 * 273.75291 * 24 22 2 40 40 H 1.08991 * 110.48506 * 97.77523 * 25 24 22 41 41 H 1.08998 * 110.48536 * 220.42234 * 25 24 22 42 42 H 1.09002 * 109.87699 * 117.39650 * 26 25 24 43 43 H 1.08998 * 109.87837 * 238.39836 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1953 -0.9402 3.6508 8 1 3.1154 -1.4967 3.4722 9 6 2.2494 -0.0449 4.8999 10 6 1.7317 -1.2558 5.6939 11 1 0.9940 -0.9969 6.4534 12 7 2.7974 -2.1211 6.2058 13 6 2.5752 -2.9018 7.3086 14 1 1.6140 -2.8799 7.8007 15 6 3.5851 -3.7212 7.7938 16 7 3.3713 -4.4720 8.8535 17 14 5.2475 -3.7584 6.9429 18 1 6.1341 -2.7294 7.5433 19 1 5.8607 -5.1002 7.1126 20 1 5.0695 -3.4751 5.4960 21 6 1.1127 -1.7567 4.3764 22 6 2.0399 -0.7213 -1.2492 23 1 1.7312 -1.7667 -1.2430 24 6 1.5381 -0.0115 -2.5324 25 6 2.6031 -0.4322 -3.5744 26 6 3.8220 -0.8408 -2.7247 27 8 3.4775 -0.6160 -1.3473 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.1493 0.5389 2.5436 32 1 3.2592 0.2589 5.1759 33 1 1.5486 0.7894 4.8697 34 1 3.6605 -2.1409 5.7635 35 1 4.0771 -5.0443 9.1928 36 1 0.1005 -1.3912 4.2028 37 1 1.2061 -2.8328 4.2302 38 1 1.5292 1.0705 -2.4003 39 1 0.5507 -0.3749 -2.8170 40 1 2.2476 -1.2778 -4.1630 41 1 2.8543 0.4069 -4.2232 42 1 4.0473 -1.8955 -2.8830 43 1 4.6845 -0.2327 -2.9974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020564681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:27 Heat of formation + Delta-G solvation = -55.251866 kcal Electronic energy + Delta-G solvation = -22485.105212 eV Core-core repulsion = 19145.042102 eV Total energy + Delta-G solvation = -3340.063110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38384 -39.27886 -37.94474 -34.35467 -33.95209 -32.47415 -32.10448 -30.27102 -28.24326 -25.41175 -25.19322 -24.17650 -22.73772 -22.01304 -21.22564 -19.99834 -18.93266 -17.67277 -17.28097 -16.54329 -16.28050 -15.74158 -15.62014 -14.83365 -14.60455 -14.39137 -13.96579 -13.67493 -13.43431 -13.02341 -12.73104 -12.66533 -12.48366 -12.16549 -12.11651 -12.02848 -11.91178 -11.85737 -11.43463 -11.26191 -10.96092 -10.92165 -10.79941 -10.36262 -10.22315 -9.87205 -9.77753 -9.60872 -9.45306 -8.92212 -8.69784 -7.28762 -5.77642 -3.14116 2.78959 3.27918 3.41188 3.46665 3.48980 3.60214 4.21568 4.36955 4.59381 4.60425 4.64476 4.72149 4.88946 4.95082 4.97448 5.07589 5.12899 5.24388 5.24679 5.35689 5.39298 5.40618 5.43659 5.55264 5.55974 5.70309 5.73604 5.76708 5.79398 5.87168 6.02650 6.13992 6.30229 6.54775 6.61607 6.72682 6.76856 6.94307 7.67682 7.99112 8.41428 8.41881 9.19244 9.91889 10.10360 11.40260 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026433 B = 0.003495 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.029716 B = 8008.663741 C = 8735.947476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.102 0.898 4 C 0.514 3.486 5 O -0.526 6.526 6 N -0.719 5.719 7 C 0.123 3.877 8 H 0.108 0.892 9 C -0.165 4.165 10 C 0.177 3.823 11 H 0.077 0.923 12 N -0.730 5.730 13 C -0.248 4.248 14 H 0.093 0.907 15 C 0.007 3.993 16 N -0.932 5.932 17 Si 0.881 3.119 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.275 1.275 21 C -0.182 4.182 22 C 0.097 3.903 23 H 0.077 0.923 24 C -0.150 4.150 25 C -0.156 4.156 26 C 0.045 3.955 27 O -0.361 6.361 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.395 0.605 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 13.909 -24.544 29.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 H 0.120 0.880 4 C 0.299 3.701 5 O -0.401 6.401 6 N -0.370 5.370 7 C 0.019 3.981 8 H 0.126 0.874 9 C -0.205 4.205 10 C 0.064 3.936 11 H 0.095 0.905 12 N -0.370 5.370 13 C -0.378 4.378 14 H 0.110 0.890 15 C -0.189 4.189 16 N -0.579 5.579 17 Si 0.711 3.289 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.201 1.201 21 C -0.224 4.224 22 C 0.039 3.961 23 H 0.095 0.905 24 C -0.188 4.188 25 C -0.194 4.194 26 C -0.032 4.032 27 O -0.279 6.279 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.229 0.771 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.185 13.077 -24.209 28.202 hybrid contribution 0.877 0.196 -0.795 1.200 sum -5.309 13.273 -25.004 28.802 Atomic orbital electron populations 1.21758 0.91958 1.03281 1.03037 1.21376 0.97434 1.01210 0.92757 0.87967 1.20427 0.80305 0.84839 0.84536 1.90745 1.36886 1.25948 1.86526 1.46093 1.53423 1.31764 1.05735 1.22617 0.98978 0.94808 0.81692 0.87410 1.23903 1.02249 0.98409 0.95944 1.20892 0.91249 0.89087 0.92331 0.90525 1.42555 1.11293 1.49594 1.33561 1.19090 1.00005 1.16409 1.02256 0.88970 1.24666 0.97892 0.98762 0.97553 1.69699 1.33314 1.30027 1.24853 0.86595 0.85433 0.77306 0.79568 1.20949 1.21570 1.20076 1.24303 0.97418 1.01059 0.99645 1.22885 0.81646 0.98883 0.92650 0.90520 1.23210 0.99294 1.01513 0.94774 1.22941 0.95836 1.02017 0.98623 1.23121 0.97475 1.00661 0.81979 1.89012 1.21160 1.92661 1.25098 0.91352 0.91205 0.91659 0.77110 0.91009 0.89906 0.80358 0.92972 0.90899 0.90963 0.90336 0.90018 0.90689 0.90535 0.92454 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.86 37.16 0.33 -0.65 16 2 C -0.11 -1.05 2.53 -91.77 -0.23 -1.28 16 3 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.51 7.39 7.06 -10.99 -0.08 7.32 16 5 O -0.53 -10.25 15.17 -6.41 -0.10 -10.35 16 6 N -0.72 -9.20 5.25 -53.01 -0.28 -9.48 16 7 C 0.12 1.98 4.09 -67.11 -0.27 1.71 16 8 H 0.11 2.11 7.50 -51.93 -0.39 1.72 16 9 C -0.17 -2.48 7.58 -25.92 -0.20 -2.68 16 10 C 0.18 3.35 4.57 -67.03 -0.31 3.04 16 11 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 12 N -0.73 -17.52 5.11 -52.55 -0.27 -17.79 16 13 C -0.25 -7.05 10.45 -15.06 -0.16 -7.21 16 14 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 15 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 16 N -0.93 -29.54 13.97 55.49 0.78 -28.77 16 17 Si 0.88 22.75 27.74 -169.99 -4.71 18.03 16 18 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 20 H -0.27 -6.87 6.52 56.52 0.37 -6.50 16 21 C -0.18 -3.12 7.69 -25.83 -0.20 -3.31 16 22 C 0.10 1.05 2.31 -25.68 -0.06 0.99 16 23 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 24 C -0.15 -1.07 5.45 -24.72 -0.13 -1.20 16 25 C -0.16 -1.08 7.01 -25.20 -0.18 -1.26 16 26 C 0.04 0.43 7.70 37.73 0.29 0.72 16 27 O -0.36 -4.89 10.59 -47.20 -0.50 -5.39 16 28 H 0.07 0.39 7.56 -51.93 -0.39 0.00 16 29 H 0.07 0.34 7.20 -51.93 -0.37 -0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.40 3.64 8.13 -40.82 -0.33 3.31 16 32 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 33 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 34 H 0.36 8.74 5.76 -40.82 -0.24 8.50 16 35 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 39 H 0.08 0.45 8.04 -51.93 -0.42 0.03 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -35.41 345.54 -8.38 -43.79 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.22 Total: 8.44 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.29 Total: -3.69 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.23 Total: -56.04 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.60 Total: -15.74 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.71 Total: 18.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.41 -8.38 -43.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020564681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.458 kcal (2) G-P(sol) polarization free energy of solvation -35.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds