Wall clock time and date at job start Tue Mar 31 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47208 * 2 1 4 4 C 1.50701 * 109.46840 * 119.99968 * 2 1 3 5 5 O 1.21284 * 120.00089 * 120.00251 * 4 2 1 6 6 N 1.34775 * 119.99923 * 300.00003 * 4 2 1 7 7 C 1.46503 * 119.99886 * 180.02562 * 6 4 2 8 8 H 1.09002 * 112.85356 * 25.32513 * 7 6 4 9 9 C 1.53780 * 113.61615 * 156.53163 * 7 6 4 10 10 C 1.53781 * 87.08339 * 139.97689 * 9 7 6 11 11 H 1.09002 * 113.61403 * 220.01433 * 10 9 7 12 12 N 1.46498 * 113.61836 * 89.11478 * 10 9 7 13 13 C 1.36937 * 120.00479 * 154.99688 * 12 10 9 14 14 H 1.08002 * 119.99018 * 0.02562 * 13 12 10 15 15 C 1.38808 * 119.99948 * 180.02562 * 13 12 10 16 16 N 1.31623 * 119.99595 * 180.02562 * 15 13 12 17 17 Si 1.86790 * 120.00333 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47357 * 89.99998 * 17 15 13 19 19 H 1.48499 * 109.47360 * 210.00269 * 17 15 13 20 20 H 1.48501 * 109.47398 * 329.99791 * 17 15 13 21 21 C 1.53790 * 113.61186 * 254.13321 * 7 6 4 22 22 C 1.52998 * 109.47055 * 239.99560 * 2 1 3 23 23 H 1.08997 * 110.67853 * 297.03466 * 22 2 1 24 24 C 1.54998 * 110.61705 * 60.00546 * 22 2 1 25 25 C 1.54817 * 102.12466 * 155.53959 * 24 22 2 26 26 C 1.54100 * 104.18606 * 339.09929 * 25 24 22 27 27 O 1.43746 * 107.29659 * 357.97343 * 26 25 24 28 28 H 1.08997 * 109.47223 * 300.00297 * 1 2 3 29 29 H 1.09007 * 109.47260 * 60.00224 * 1 2 3 30 30 H 1.09001 * 109.47208 * 180.02562 * 1 2 3 31 31 H 0.96995 * 120.00492 * 359.97438 * 6 4 2 32 32 H 1.09008 * 113.60950 * 254.52448 * 9 7 6 33 33 H 1.09000 * 113.61579 * 25.42436 * 9 7 6 34 34 H 0.97005 * 119.99856 * 335.00397 * 12 10 9 35 35 H 0.96994 * 119.99948 * 180.02562 * 16 15 13 36 36 H 1.09007 * 113.61261 * 334.56948 * 21 7 6 37 37 H 1.08996 * 113.61331 * 105.46426 * 21 7 6 38 38 H 1.09002 * 110.90913 * 37.32174 * 24 22 2 39 39 H 1.08997 * 110.90321 * 273.75291 * 24 22 2 40 40 H 1.08991 * 110.48506 * 97.77523 * 25 24 22 41 41 H 1.08998 * 110.48536 * 220.42234 * 25 24 22 42 42 H 1.09002 * 109.87699 * 117.39650 * 26 25 24 43 43 H 1.08998 * 109.87837 * 238.39836 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1953 -0.9402 3.6508 8 1 3.1154 -1.4967 3.4722 9 6 2.2494 -0.0449 4.8999 10 6 1.7317 -1.2558 5.6939 11 1 0.9940 -0.9969 6.4534 12 7 2.7974 -2.1211 6.2058 13 6 2.5752 -2.9018 7.3086 14 1 1.6140 -2.8799 7.8007 15 6 3.5851 -3.7212 7.7938 16 7 3.3713 -4.4720 8.8535 17 14 5.2475 -3.7584 6.9429 18 1 6.1341 -2.7294 7.5433 19 1 5.8607 -5.1002 7.1126 20 1 5.0695 -3.4751 5.4960 21 6 1.1127 -1.7567 4.3764 22 6 2.0399 -0.7213 -1.2492 23 1 1.7312 -1.7667 -1.2430 24 6 1.5381 -0.0115 -2.5324 25 6 2.6031 -0.4322 -3.5744 26 6 3.8220 -0.8408 -2.7247 27 8 3.4775 -0.6160 -1.3473 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.1493 0.5389 2.5436 32 1 3.2592 0.2589 5.1759 33 1 1.5486 0.7894 4.8697 34 1 3.6605 -2.1409 5.7635 35 1 4.0771 -5.0443 9.1928 36 1 0.1005 -1.3912 4.2028 37 1 1.2061 -2.8328 4.2302 38 1 1.5292 1.0705 -2.4003 39 1 0.5507 -0.3749 -2.8170 40 1 2.2476 -1.2778 -4.1630 41 1 2.8543 0.4069 -4.2232 42 1 4.0473 -1.8955 -2.8830 43 1 4.6845 -0.2327 -2.9974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020564681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:27 Heat of formation + Delta-G solvation = -81.421627 kcal Electronic energy + Delta-G solvation = -22486.240018 eV Core-core repulsion = 19145.042102 eV Total energy + Delta-G solvation = -3341.197916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.42110 -40.32781 -39.21998 -35.81466 -35.16551 -34.00715 -32.82793 -32.20859 -28.92367 -26.61235 -26.52223 -25.51886 -24.26318 -22.97488 -22.01079 -21.01700 -20.46931 -19.61777 -18.28098 -17.67401 -17.15135 -16.79279 -16.48417 -16.39584 -16.12984 -15.69695 -15.24099 -14.78126 -14.65780 -14.36325 -14.06105 -13.85250 -13.72295 -13.37947 -13.25423 -13.01440 -12.90074 -12.63412 -12.57303 -12.46189 -12.26210 -12.10554 -11.93702 -11.86239 -11.78149 -11.50908 -11.36450 -10.96908 -10.63676 -10.60262 -9.95601 -9.33830 -8.07070 -5.39920 1.33633 1.36251 1.42239 1.69442 2.23692 2.43122 2.89095 3.22993 3.47230 3.57497 3.62655 3.71543 3.82886 3.88109 3.99973 4.09647 4.16563 4.24092 4.24604 4.35553 4.45602 4.56919 4.76582 4.80868 4.82492 4.84832 4.88565 4.93690 4.97619 5.01623 5.10022 5.12402 5.20908 5.23830 5.27536 5.31267 5.64343 5.76777 6.02256 6.19024 6.65598 7.03079 7.37017 7.80600 7.96520 9.14262 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026433 B = 0.003495 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.029716 B = 8008.663741 C = 8735.947476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.124 0.876 4 C 0.505 3.495 5 O -0.587 6.587 6 N -0.702 5.702 7 C 0.127 3.873 8 H 0.067 0.933 9 C -0.136 4.136 10 C 0.152 3.848 11 H 0.079 0.921 12 N -0.739 5.739 13 C -0.230 4.230 14 H 0.066 0.934 15 C -0.060 4.060 16 N -0.980 5.980 17 Si 0.946 3.054 18 H -0.272 1.272 19 H -0.294 1.294 20 H -0.267 1.267 21 C -0.171 4.171 22 C 0.086 3.914 23 H 0.050 0.950 24 C -0.139 4.139 25 C -0.151 4.151 26 C 0.033 3.967 27 O -0.400 6.400 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.418 0.582 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.362 0.638 35 H 0.258 0.742 36 H 0.108 0.892 37 H 0.034 0.966 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 17.219 -27.034 33.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.142 0.858 4 C 0.293 3.707 5 O -0.466 6.466 6 N -0.354 5.354 7 C 0.021 3.979 8 H 0.086 0.914 9 C -0.176 4.176 10 C 0.042 3.958 11 H 0.098 0.902 12 N -0.380 5.380 13 C -0.361 4.361 14 H 0.084 0.916 15 C -0.251 4.251 16 N -0.630 5.630 17 Si 0.775 3.225 18 H -0.198 1.198 19 H -0.221 1.221 20 H -0.193 1.193 21 C -0.213 4.213 22 C 0.028 3.972 23 H 0.068 0.932 24 C -0.176 4.176 25 C -0.188 4.188 26 C -0.044 4.044 27 O -0.320 6.320 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.256 0.744 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.195 0.805 35 H 0.067 0.933 36 H 0.127 0.873 37 H 0.053 0.947 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.528 16.476 -26.743 32.300 hybrid contribution 1.183 -0.828 -0.040 1.445 sum -6.345 15.647 -26.783 31.661 Atomic orbital electron populations 1.21810 0.89178 1.03177 1.05399 1.21442 0.99455 1.01157 0.89681 0.85836 1.21370 0.79161 0.84171 0.86015 1.90725 1.39642 1.28830 1.87409 1.45860 1.53132 1.31991 1.04379 1.22214 0.97048 0.95084 0.83532 0.91449 1.23751 1.03117 0.97754 0.92934 1.21254 0.90696 0.90587 0.93240 0.90246 1.42596 1.12685 1.50101 1.32620 1.19106 0.98599 1.15795 1.02575 0.91583 1.25400 1.01765 0.99273 0.98691 1.69854 1.34511 1.31694 1.26969 0.85538 0.81085 0.77112 0.78816 1.19777 1.22077 1.19254 1.24197 0.99605 0.99077 0.98403 1.23045 0.80820 0.98258 0.95075 0.93222 1.23201 1.00021 1.02090 0.92293 1.22945 0.94378 1.03086 0.98414 1.23316 0.99374 1.00377 0.81293 1.88970 1.23017 1.92741 1.27289 0.89578 0.88304 0.92991 0.74393 0.91354 0.85168 0.80468 0.93256 0.87339 0.94659 0.88621 0.87958 0.89873 0.88547 0.93597 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.86 71.98 0.64 -0.74 16 2 C -0.10 -1.67 2.53 -11.54 -0.03 -1.70 16 3 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.51 14.06 7.06 87.66 0.62 14.68 16 5 O -0.59 -23.63 15.17 8.40 0.13 -23.50 16 6 N -0.70 -16.23 5.25 -440.02 -2.31 -18.54 16 7 C 0.13 3.92 4.09 45.52 0.19 4.11 16 8 H 0.07 2.69 7.50 -2.39 -0.02 2.68 16 9 C -0.14 -3.69 7.58 31.12 0.24 -3.45 16 10 C 0.15 5.59 4.57 45.58 0.21 5.80 16 11 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 12 N -0.74 -35.63 5.11 -320.18 -1.64 -37.27 16 13 C -0.23 -13.36 10.45 84.03 0.88 -12.48 16 14 H 0.07 4.11 8.06 -2.91 -0.02 4.09 16 15 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 16 N -0.98 -64.04 13.97 21.65 0.30 -63.73 16 17 Si 0.95 48.14 27.74 68.60 1.90 50.04 16 18 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 20 H -0.27 -13.05 6.52 99.48 0.65 -12.41 16 21 C -0.17 -5.67 7.69 31.18 0.24 -5.43 16 22 C 0.09 1.76 2.31 31.28 0.07 1.83 16 23 H 0.05 1.24 8.05 -2.39 -0.02 1.22 16 24 C -0.14 -1.52 5.45 31.90 0.17 -1.35 16 25 C -0.15 -1.73 7.01 31.59 0.22 -1.51 16 26 C 0.03 0.63 7.70 72.35 0.56 1.18 16 27 O -0.40 -10.88 10.59 -137.54 -1.46 -12.34 16 28 H 0.09 0.57 7.56 -2.39 -0.02 0.55 16 29 H 0.10 0.46 7.20 -2.38 -0.02 0.45 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.42 5.83 8.13 -92.71 -0.75 5.07 16 32 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.13 2.35 8.11 -2.39 -0.02 2.33 16 34 H 0.36 17.45 5.76 -92.70 -0.53 16.92 16 35 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 36 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 37 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.10 0.76 8.06 -2.39 -0.02 0.74 16 39 H 0.10 0.72 8.04 -2.39 -0.02 0.70 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -82.71 345.54 1.05 -81.66 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.34 Total: 25.89 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 4.47 Total: -2.21 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -3.65 Total: -119.55 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -1.33 Total: -35.84 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 1.90 Total: 50.04 kcal Total: -82.71 1.05 -81.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020564681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.239 kcal (2) G-P(sol) polarization free energy of solvation -82.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds