Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46719 * 2 1 4 4 C 1.50696 * 109.47394 * 240.00152 * 2 1 3 5 5 O 1.21278 * 119.99884 * 239.99041 * 4 2 1 6 6 N 1.34781 * 119.99856 * 59.99822 * 4 2 1 7 7 C 1.46504 * 119.99595 * 180.02562 * 6 4 2 8 8 H 1.09004 * 112.84633 * 336.18950 * 7 6 4 9 9 C 1.53774 * 113.69170 * 107.46232 * 7 6 4 10 10 C 1.53782 * 87.08161 * 139.98977 * 9 7 6 11 11 H 1.09002 * 113.68975 * 220.00709 * 10 9 7 12 12 N 1.46498 * 113.61718 * 89.11276 * 10 9 7 13 13 C 1.36943 * 119.99752 * 107.22616 * 12 10 9 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 10 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 10 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47294 * 90.00155 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00015 * 17 15 13 20 20 H 1.48496 * 109.47166 * 329.99846 * 17 15 13 21 21 C 1.53781 * 87.08215 * 334.56639 * 10 9 7 22 22 C 1.53002 * 109.47637 * 119.99588 * 2 1 3 23 23 H 1.08997 * 110.27852 * 180.64273 * 22 2 1 24 24 C 1.54955 * 110.31053 * 302.84094 * 22 2 1 25 25 C 1.55296 * 100.94241 * 155.35660 * 24 22 2 26 26 C 1.54387 * 102.25540 * 325.86477 * 25 24 22 27 27 O 1.43243 * 107.58769 * 21.35789 * 26 25 24 28 28 H 1.08995 * 109.47366 * 60.00176 * 1 2 3 29 29 H 1.09003 * 109.46278 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47153 * 299.99622 * 1 2 3 31 31 H 0.96996 * 120.00132 * 359.97438 * 6 4 2 32 32 H 1.08999 * 113.61704 * 25.43765 * 9 7 6 33 33 H 1.09006 * 113.61200 * 254.53450 * 9 7 6 34 34 H 0.97001 * 120.00384 * 287.50972 * 12 10 9 35 35 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 36 36 H 1.08995 * 113.61890 * 139.98284 * 21 10 9 37 37 H 1.09004 * 113.61421 * 270.80580 * 21 10 9 38 38 H 1.08994 * 111.12050 * 273.27719 * 24 22 2 39 39 H 1.08999 * 111.11892 * 37.43335 * 24 22 2 40 40 H 1.09000 * 110.84545 * 207.67919 * 25 24 22 41 41 H 1.08994 * 111.02784 * 84.13087 * 25 24 22 42 42 H 1.08997 * 109.83379 * 261.85044 * 26 25 24 43 43 H 1.09000 * 109.83120 * 140.86463 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.7298 -1.6963 -1.1191 6 7 1.7068 -0.2498 -2.4546 7 6 2.1948 -0.9408 -3.6507 8 1 3.1000 -1.5191 -3.4657 9 6 1.1044 -1.7256 -4.3990 10 6 1.7519 -1.2290 -5.7024 11 1 1.0310 -0.9479 -6.4702 12 7 2.8059 -2.1123 -6.2078 13 6 2.5799 -2.8830 -7.3169 14 1 1.6262 -2.8363 -7.8217 15 6 3.5764 -3.7242 -7.7924 16 7 4.7385 -3.7813 -7.1768 17 14 3.2684 -4.7750 -9.3057 18 1 3.6690 -4.0218 -10.5213 19 1 4.0663 -6.0239 -9.2120 20 1 1.8251 -5.1146 -9.3871 21 6 2.2845 -0.0361 -4.8911 22 6 2.0401 -0.7211 1.2493 23 1 3.1299 -0.7189 1.2682 24 6 1.4765 -0.0486 2.5264 25 6 1.5449 -1.2274 3.5351 26 6 1.2501 -2.4465 2.6348 27 8 1.5436 -2.0687 1.2847 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.1488 0.5385 -2.5436 32 1 0.0984 -1.3388 -4.2362 33 1 1.1714 -2.8049 -4.2618 34 1 3.6623 -2.1542 -5.7543 35 1 5.4350 -4.3689 -7.5093 36 1 3.3039 0.2486 -5.1511 37 1 1.6017 0.8131 -4.8640 38 1 2.1092 0.7793 2.8462 39 1 0.4483 0.2805 2.3758 40 1 0.7827 -1.1221 4.3071 41 1 2.5371 -1.3046 3.9797 42 1 0.1997 -2.7244 2.7209 43 1 1.8812 -3.2850 2.9295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020564682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = -55.329360 kcal Electronic energy + Delta-G solvation = -22498.967150 eV Core-core repulsion = 19158.900680 eV Total energy + Delta-G solvation = -3340.066471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35025 -39.17836 -37.76217 -34.12845 -33.75216 -32.40213 -32.09489 -29.65005 -28.19525 -25.41715 -25.03500 -24.16654 -22.87036 -21.98481 -21.19007 -19.72329 -18.62103 -17.34456 -17.09702 -16.72991 -16.19405 -15.62562 -15.02028 -14.80197 -14.65436 -14.27346 -14.00915 -13.65694 -13.45678 -13.05980 -12.63739 -12.48153 -12.14827 -12.03964 -11.96624 -11.86723 -11.75440 -11.57087 -11.30725 -11.18928 -10.91840 -10.84542 -10.73893 -10.20512 -10.09437 -9.80235 -9.66615 -9.52422 -9.31791 -8.86800 -8.55912 -6.96016 -5.75197 -3.05087 2.92168 3.40142 3.45745 3.50603 3.52902 3.70656 4.19847 4.44615 4.59779 4.63869 4.73810 4.85115 4.88732 5.01615 5.14587 5.15427 5.32579 5.36189 5.40326 5.44302 5.45991 5.53518 5.55704 5.62602 5.70997 5.73629 5.87762 5.93629 6.05734 6.08538 6.15187 6.30490 6.45475 6.70770 6.79951 6.88108 7.01011 7.12459 7.72628 7.81877 8.43118 8.55666 9.53667 10.10620 10.44605 11.47079 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031333 B = 0.003141 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.412433 B = 8913.329467 C = 9362.061721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 H 0.104 0.896 4 C 0.513 3.487 5 O -0.522 6.522 6 N -0.721 5.721 7 C 0.127 3.873 8 H 0.112 0.888 9 C -0.184 4.184 10 C 0.171 3.829 11 H 0.067 0.933 12 N -0.706 5.706 13 C -0.244 4.244 14 H 0.073 0.927 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C -0.164 4.164 22 C 0.102 3.898 23 H 0.076 0.924 24 C -0.158 4.158 25 C -0.155 4.155 26 C 0.047 3.953 27 O -0.357 6.357 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.393 0.607 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.650 12.447 20.613 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.122 0.878 4 C 0.298 3.702 5 O -0.396 6.396 6 N -0.371 5.371 7 C 0.023 3.977 8 H 0.130 0.870 9 C -0.226 4.226 10 C 0.058 3.942 11 H 0.085 0.915 12 N -0.344 5.344 13 C -0.375 4.375 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.740 3.260 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.204 4.204 22 C 0.044 3.956 23 H 0.093 0.907 24 C -0.195 4.195 25 C -0.193 4.193 26 C -0.030 4.030 27 O -0.276 6.276 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.227 0.773 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.182 11.460 20.332 25.081 hybrid contribution -0.083 -0.110 -0.380 0.404 sum -9.265 11.350 19.952 24.753 Atomic orbital electron populations 1.21784 0.92617 1.03538 1.02091 1.21511 0.98294 1.00186 0.93385 0.87815 1.20389 0.80507 0.84849 0.84459 1.90758 1.37083 1.25334 1.86447 1.46118 1.53477 1.31698 1.05852 1.22579 0.98935 0.94743 0.81441 0.87037 1.24301 0.97146 1.01143 1.00012 1.20914 0.91576 0.89608 0.92078 0.91485 1.42205 1.12861 1.47327 1.32041 1.19271 0.98693 1.16504 1.03061 0.90953 1.24787 0.96123 1.00376 0.99562 1.69673 1.04521 1.41939 1.41653 0.86159 0.77297 0.79833 0.82701 1.21682 1.21747 1.20699 1.23889 1.02113 0.98210 0.96232 1.22677 0.98142 0.82292 0.92515 0.90662 1.23455 1.02794 0.98431 0.94814 1.23101 1.02852 0.94785 0.98542 1.23115 1.00419 0.96946 0.82491 1.88616 1.85096 1.28902 1.24945 0.92094 0.91186 0.91588 0.77326 0.91393 0.91130 0.77971 0.93390 0.90977 0.90429 0.89920 0.89661 0.90211 0.90580 0.91643 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.63 37.16 0.32 -0.91 16 2 C -0.11 -1.17 2.70 -91.77 -0.25 -1.42 16 3 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.51 7.80 7.03 -10.99 -0.08 7.72 16 5 O -0.52 -10.67 14.99 -11.23 -0.17 -10.83 16 6 N -0.72 -9.93 5.25 -53.02 -0.28 -10.21 16 7 C 0.13 2.20 4.11 -67.12 -0.28 1.93 16 8 H 0.11 2.35 7.46 -51.93 -0.39 1.97 16 9 C -0.18 -3.39 7.68 -25.92 -0.20 -3.59 16 10 C 0.17 3.44 4.56 -67.12 -0.31 3.14 16 11 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 12 N -0.71 -18.14 5.31 -52.64 -0.28 -18.42 16 13 C -0.24 -6.90 9.97 -15.06 -0.15 -7.05 16 14 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 17 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.16 -2.68 7.58 -25.92 -0.20 -2.87 16 22 C 0.10 1.14 2.69 -25.70 -0.07 1.07 16 23 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 24 C -0.16 -1.15 6.45 -24.48 -0.16 -1.30 16 25 C -0.16 -1.11 7.02 -24.79 -0.17 -1.29 16 26 C 0.05 0.47 7.79 37.88 0.30 0.77 16 27 O -0.36 -5.00 9.41 -52.02 -0.49 -5.49 16 28 H 0.06 0.45 7.56 -51.93 -0.39 0.05 16 29 H 0.07 0.76 7.68 -51.93 -0.40 0.37 16 30 H 0.07 0.43 6.05 -51.93 -0.31 0.11 16 31 H 0.39 4.01 8.15 -40.82 -0.33 3.68 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.39 10.62 7.90 -40.82 -0.32 10.30 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.54 5.74 -51.93 -0.30 0.24 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -34.71 344.91 -8.71 -43.42 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.06 Total: 10.90 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.33 Total: -4.27 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.17 Total: -56.65 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.66 Total: -16.32 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.71 -8.71 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020564682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.910 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds