Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46719 * 2 1 4 4 C 1.50696 * 109.47394 * 240.00152 * 2 1 3 5 5 O 1.21278 * 119.99884 * 239.99041 * 4 2 1 6 6 N 1.34781 * 119.99856 * 59.99822 * 4 2 1 7 7 C 1.46504 * 119.99595 * 180.02562 * 6 4 2 8 8 H 1.09004 * 112.84633 * 336.18950 * 7 6 4 9 9 C 1.53774 * 113.69170 * 107.46232 * 7 6 4 10 10 C 1.53782 * 87.08161 * 139.98977 * 9 7 6 11 11 H 1.09002 * 113.68975 * 220.00709 * 10 9 7 12 12 N 1.46498 * 113.61718 * 89.11276 * 10 9 7 13 13 C 1.36943 * 119.99752 * 107.22616 * 12 10 9 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 10 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 10 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47294 * 90.00155 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00015 * 17 15 13 20 20 H 1.48496 * 109.47166 * 329.99846 * 17 15 13 21 21 C 1.53781 * 87.08215 * 334.56639 * 10 9 7 22 22 C 1.53002 * 109.47637 * 119.99588 * 2 1 3 23 23 H 1.08997 * 110.27852 * 180.64273 * 22 2 1 24 24 C 1.54955 * 110.31053 * 302.84094 * 22 2 1 25 25 C 1.55296 * 100.94241 * 155.35660 * 24 22 2 26 26 C 1.54387 * 102.25540 * 325.86477 * 25 24 22 27 27 O 1.43243 * 107.58769 * 21.35789 * 26 25 24 28 28 H 1.08995 * 109.47366 * 60.00176 * 1 2 3 29 29 H 1.09003 * 109.46278 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47153 * 299.99622 * 1 2 3 31 31 H 0.96996 * 120.00132 * 359.97438 * 6 4 2 32 32 H 1.08999 * 113.61704 * 25.43765 * 9 7 6 33 33 H 1.09006 * 113.61200 * 254.53450 * 9 7 6 34 34 H 0.97001 * 120.00384 * 287.50972 * 12 10 9 35 35 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 36 36 H 1.08995 * 113.61890 * 139.98284 * 21 10 9 37 37 H 1.09004 * 113.61421 * 270.80580 * 21 10 9 38 38 H 1.08994 * 111.12050 * 273.27719 * 24 22 2 39 39 H 1.08999 * 111.11892 * 37.43335 * 24 22 2 40 40 H 1.09000 * 110.84545 * 207.67919 * 25 24 22 41 41 H 1.08994 * 111.02784 * 84.13087 * 25 24 22 42 42 H 1.08997 * 109.83379 * 261.85044 * 26 25 24 43 43 H 1.09000 * 109.83120 * 140.86463 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.7298 -1.6963 -1.1191 6 7 1.7068 -0.2498 -2.4546 7 6 2.1948 -0.9408 -3.6507 8 1 3.1000 -1.5191 -3.4657 9 6 1.1044 -1.7256 -4.3990 10 6 1.7519 -1.2290 -5.7024 11 1 1.0310 -0.9479 -6.4702 12 7 2.8059 -2.1123 -6.2078 13 6 2.5799 -2.8830 -7.3169 14 1 1.6262 -2.8363 -7.8217 15 6 3.5764 -3.7242 -7.7924 16 7 4.7385 -3.7813 -7.1768 17 14 3.2684 -4.7750 -9.3057 18 1 3.6690 -4.0218 -10.5213 19 1 4.0663 -6.0239 -9.2120 20 1 1.8251 -5.1146 -9.3871 21 6 2.2845 -0.0361 -4.8911 22 6 2.0401 -0.7211 1.2493 23 1 3.1299 -0.7189 1.2682 24 6 1.4765 -0.0486 2.5264 25 6 1.5449 -1.2274 3.5351 26 6 1.2501 -2.4465 2.6348 27 8 1.5436 -2.0687 1.2847 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.1488 0.5385 -2.5436 32 1 0.0984 -1.3388 -4.2362 33 1 1.1714 -2.8049 -4.2618 34 1 3.6623 -2.1542 -5.7543 35 1 5.4350 -4.3689 -7.5093 36 1 3.3039 0.2486 -5.1511 37 1 1.6017 0.8131 -4.8640 38 1 2.1092 0.7793 2.8462 39 1 0.4483 0.2805 2.3758 40 1 0.7827 -1.1221 4.3071 41 1 2.5371 -1.3046 3.9797 42 1 0.1997 -2.7244 2.7209 43 1 1.8812 -3.2850 2.9295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020564682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = -80.515322 kcal Electronic energy + Delta-G solvation = -22500.059296 eV Core-core repulsion = 19158.900680 eV Total energy + Delta-G solvation = -3341.158616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41958 -40.32251 -39.13288 -35.72110 -34.99867 -33.88504 -32.83907 -31.61026 -28.94869 -26.62930 -26.48331 -25.76789 -24.39609 -22.80338 -22.15432 -20.85397 -20.07138 -19.35213 -17.93751 -17.84532 -17.38623 -16.75017 -16.53717 -16.06681 -15.82399 -15.60257 -15.30110 -14.96840 -14.69368 -14.29886 -14.20662 -13.67322 -13.33719 -13.30713 -13.12576 -12.81295 -12.74598 -12.68949 -12.57448 -12.46054 -12.18435 -12.06082 -11.93202 -11.80024 -11.70712 -11.51989 -11.31185 -10.90653 -10.56681 -10.39621 -9.91015 -9.04305 -7.96820 -5.26960 1.45802 1.48718 1.57036 1.74609 2.27946 2.54426 2.94843 3.35001 3.54200 3.65129 3.72670 3.83035 3.87846 3.90636 4.01906 4.10622 4.16917 4.30505 4.33848 4.40011 4.45249 4.64414 4.79936 4.81998 4.83352 4.86322 4.92521 4.96569 5.00401 5.02106 5.12016 5.16578 5.23394 5.26000 5.34540 5.44056 5.50523 5.72905 6.22981 6.25649 6.70498 7.29685 7.42813 8.06166 8.27529 9.26911 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031333 B = 0.003141 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.412433 B = 8913.329467 C = 9362.061721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 H 0.142 0.858 4 C 0.504 3.496 5 O -0.585 6.585 6 N -0.703 5.703 7 C 0.131 3.869 8 H 0.063 0.937 9 C -0.172 4.172 10 C 0.151 3.849 11 H 0.080 0.920 12 N -0.725 5.725 13 C -0.244 4.244 14 H 0.083 0.917 15 C -0.081 4.081 16 N -0.973 5.973 17 Si 0.978 3.022 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.267 1.267 21 C -0.136 4.136 22 C 0.088 3.912 23 H 0.050 0.950 24 C -0.143 4.143 25 C -0.148 4.148 26 C 0.035 3.965 27 O -0.399 6.399 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.096 0.904 31 H 0.417 0.583 32 H 0.105 0.895 33 H 0.028 0.972 34 H 0.371 0.629 35 H 0.251 0.749 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.379 15.461 21.485 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 H 0.160 0.840 4 C 0.292 3.708 5 O -0.464 6.464 6 N -0.355 5.355 7 C 0.026 3.974 8 H 0.081 0.919 9 C -0.214 4.214 10 C 0.040 3.960 11 H 0.098 0.902 12 N -0.362 5.362 13 C -0.375 4.375 14 H 0.101 0.899 15 C -0.273 4.273 16 N -0.624 5.624 17 Si 0.807 3.193 18 H -0.209 1.209 19 H -0.226 1.226 20 H -0.192 1.192 21 C -0.175 4.175 22 C 0.031 3.969 23 H 0.068 0.932 24 C -0.180 4.180 25 C -0.186 4.186 26 C -0.041 4.041 27 O -0.319 6.319 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.255 0.745 32 H 0.124 0.876 33 H 0.047 0.953 34 H 0.202 0.798 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.997 14.552 21.216 28.387 hybrid contribution 0.719 -1.043 -0.591 1.398 sum -11.278 13.509 20.625 27.112 Atomic orbital electron populations 1.21798 0.90658 1.02437 1.04596 1.21604 0.99652 1.01049 0.90074 0.84007 1.21416 0.79253 0.84174 0.85991 1.90739 1.39965 1.28384 1.87362 1.45872 1.53229 1.31930 1.04459 1.22106 0.96840 0.95029 0.83452 0.91911 1.24184 0.99305 0.98796 0.99101 1.21261 0.91021 0.90647 0.93074 0.90239 1.42424 1.13642 1.48401 1.31739 1.19732 0.98719 1.15880 1.03215 0.89932 1.25681 0.96135 1.02427 1.03028 1.69853 1.05565 1.43264 1.43671 0.85066 0.77590 0.77584 0.79075 1.20928 1.22570 1.19198 1.23721 1.02512 0.97931 0.93328 1.22852 0.97079 0.82020 0.94982 0.93245 1.23439 1.03903 0.98538 0.92165 1.23103 1.03772 0.93199 0.98514 1.23307 1.00734 0.98178 0.81896 1.88584 1.85258 1.30814 1.27247 0.90193 0.94043 0.88499 0.74511 0.87623 0.95335 0.79787 0.94050 0.92136 0.85361 0.87722 0.87874 0.87705 0.90490 0.90743 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.63 71.98 0.62 -1.29 16 2 C -0.10 -1.92 2.70 -11.54 -0.03 -1.95 16 3 H 0.14 1.58 8.14 -2.38 -0.02 1.56 16 4 C 0.50 15.24 7.03 87.66 0.62 15.86 16 5 O -0.59 -25.41 14.99 13.03 0.20 -25.22 16 6 N -0.70 -18.20 5.25 -440.03 -2.31 -20.51 16 7 C 0.13 4.56 4.11 45.52 0.19 4.74 16 8 H 0.06 2.84 7.46 -2.39 -0.02 2.83 16 9 C -0.17 -6.27 7.68 31.12 0.24 -6.03 16 10 C 0.15 5.95 4.56 45.52 0.21 6.15 16 11 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 12 N -0.72 -38.25 5.31 -320.44 -1.70 -39.95 16 13 C -0.24 -13.96 9.97 84.03 0.84 -13.12 16 14 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 15 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 16 N -0.97 -62.47 13.06 21.65 0.28 -62.19 16 17 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 18 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 19 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 21 C -0.14 -4.14 7.58 31.12 0.24 -3.91 16 22 C 0.09 1.91 2.69 31.26 0.08 1.99 16 23 H 0.05 1.27 8.12 -2.39 -0.02 1.25 16 24 C -0.14 -1.64 6.45 32.05 0.21 -1.43 16 25 C -0.15 -1.82 7.02 31.85 0.22 -1.60 16 26 C 0.04 0.70 7.79 72.45 0.56 1.27 16 27 O -0.40 -11.54 9.41 -132.93 -1.25 -12.79 16 28 H 0.08 0.80 7.56 -2.39 -0.02 0.78 16 29 H 0.04 0.83 7.68 -2.39 -0.02 0.81 16 30 H 0.10 0.77 6.05 -2.39 -0.01 0.76 16 31 H 0.42 6.81 8.15 -92.71 -0.76 6.05 16 32 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.37 21.48 7.90 -92.71 -0.73 20.75 16 35 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.13 2.67 8.12 -2.39 -0.02 2.65 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 0.82 5.74 -2.39 -0.01 0.81 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -82.58 344.91 1.23 -81.35 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.48 Total: 33.38 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 4.46 Total: -3.66 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -3.73 Total: -122.65 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.05 Total: -38.00 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -82.58 1.23 -81.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020564682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.839 kcal (2) G-P(sol) polarization free energy of solvation -82.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds