Wall clock time and date at job start Tue Mar 31 2020 05:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.48092 * 2 1 4 4 C 1.53096 * 109.48385 * 120.02539 * 2 1 3 5 5 C 1.53170 * 109.16626 * 177.60442 * 4 2 1 6 6 H 1.08998 * 109.54668 * 62.97193 * 5 4 2 7 7 C 1.50703 * 109.54299 * 183.15161 * 5 4 2 8 8 O 1.21278 * 120.00183 * 0.02562 * 7 5 4 9 9 N 1.34783 * 119.99755 * 179.97438 * 7 5 4 10 10 C 1.46499 * 119.99531 * 180.02562 * 9 7 5 11 11 H 1.08996 * 112.85385 * 23.80181 * 10 9 7 12 12 C 1.53781 * 113.61225 * 155.00207 * 10 9 7 13 13 C 1.53786 * 87.17350 * 139.93836 * 12 10 9 14 14 H 1.09000 * 113.61138 * 220.06261 * 13 12 10 15 15 N 1.46496 * 113.61518 * 89.15486 * 13 12 10 16 16 C 1.36940 * 119.99538 * 154.99700 * 15 13 12 17 17 H 1.07999 * 120.00330 * 0.02562 * 16 15 13 18 18 C 1.38814 * 119.99727 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00132 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46947 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47288 * 119.99638 * 20 18 16 23 23 H 1.48499 * 109.46888 * 240.00026 * 20 18 16 24 24 C 1.53782 * 113.61191 * 252.49880 * 10 9 7 25 25 C 1.53182 * 109.03330 * 303.01642 * 5 4 2 26 26 C 1.53086 * 109.16300 * 56.98419 * 25 5 4 27 27 O 1.42908 * 109.41395 * 302.38518 * 26 25 5 28 28 H 1.08998 * 109.46833 * 299.97225 * 1 2 3 29 29 H 1.08997 * 109.47238 * 59.97584 * 1 2 3 30 30 H 1.09009 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.52149 * 57.69317 * 4 2 1 32 32 H 1.09000 * 109.56941 * 297.54178 * 4 2 1 33 33 H 0.96997 * 119.99692 * 0.02562 * 9 7 5 34 34 H 1.09002 * 113.61445 * 254.52836 * 12 10 9 35 35 H 1.09002 * 113.61408 * 25.34566 * 12 10 9 36 36 H 0.97001 * 120.00117 * 335.00621 * 15 13 12 37 37 H 0.96996 * 120.00477 * 180.02562 * 19 18 16 38 38 H 1.08997 * 113.61668 * 334.56642 * 24 10 9 39 39 H 1.08994 * 113.61387 * 105.47377 * 24 10 9 40 40 H 1.08999 * 109.51739 * 176.88684 * 25 5 4 41 41 H 1.08997 * 109.52051 * 297.07316 * 25 5 4 42 42 H 1.09002 * 109.47936 * 182.40698 * 26 25 5 43 43 H 1.08995 * 109.49299 * 62.37897 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7705 1.2124 6 1 3.9689 0.2439 1.2426 7 6 4.0800 -1.5472 2.3994 8 8 3.2971 -2.0170 3.1975 9 7 5.4053 -1.7204 2.5734 10 6 5.8999 -2.4759 3.7270 11 1 5.1624 -3.1733 4.1241 12 6 7.2850 -3.1053 3.5032 13 6 7.6157 -2.7073 4.9513 14 1 8.6309 -2.3317 5.0799 15 7 7.2566 -3.7294 5.9375 16 6 7.9110 -3.7810 7.1393 17 1 8.6915 -3.0681 7.3603 18 6 7.5710 -4.7498 8.0735 19 7 6.6202 -5.6190 7.8040 20 14 8.4631 -4.8199 9.7132 21 1 9.4819 -3.7409 9.7690 22 1 7.4862 -4.6365 10.8165 23 1 9.1309 -6.1385 9.8574 24 6 6.5601 -1.5965 4.8020 25 6 4.0178 -1.4597 -0.0807 26 6 3.4310 -0.7091 -1.2788 27 8 2.0068 -0.6742 -1.1663 28 1 -0.3633 0.5134 0.8902 29 1 -0.3633 0.5142 -0.8897 30 1 -0.3634 -1.0278 -0.0005 31 1 1.6445 -1.7375 1.2710 32 1 1.7147 -0.1852 2.1404 33 1 6.0314 -1.3449 1.9348 34 1 7.2542 -4.1830 3.3427 35 1 7.8865 -2.5836 2.7587 36 1 6.5554 -4.3696 5.7391 37 1 6.3823 -6.2958 8.4569 38 1 6.9641 -0.6615 4.4138 39 1 5.9441 -1.4562 5.6901 40 1 5.1061 -1.4492 -0.1417 41 1 3.6617 -2.4899 -0.0861 42 1 3.7104 -1.2200 -2.2002 43 1 3.8193 0.3092 -1.2958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020834762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:08 Heat of formation + Delta-G solvation = -66.341720 kcal Electronic energy + Delta-G solvation = -22306.741529 eV Core-core repulsion = 18966.197526 eV Total energy + Delta-G solvation = -3340.544003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48776 -39.16317 -37.85755 -34.16076 -33.82431 -33.08876 -32.39218 -29.70719 -28.18452 -25.62236 -25.11718 -24.05234 -23.07598 -22.46323 -20.96688 -20.04106 -18.73111 -17.38932 -17.07952 -16.58532 -16.19348 -15.83400 -15.29237 -14.87381 -14.73698 -14.33878 -14.02669 -13.89348 -13.37089 -13.02208 -12.86267 -12.67651 -12.58333 -12.21175 -12.07524 -11.98032 -11.66956 -11.56252 -11.40932 -11.02781 -10.89764 -10.79791 -10.69874 -10.27044 -10.13970 -10.01468 -9.85568 -9.72137 -9.38687 -8.92557 -8.69577 -7.01441 -5.80031 -3.10243 2.72235 3.28115 3.42206 3.47439 3.49399 3.50137 4.33956 4.47173 4.50967 4.55400 4.62434 4.85375 4.91819 5.04153 5.08903 5.16176 5.22194 5.26078 5.33369 5.38557 5.39300 5.46802 5.52589 5.63440 5.69227 5.83973 5.86424 5.90908 5.98812 6.07222 6.09037 6.21827 6.36626 6.61445 6.71639 6.77785 6.95074 7.02784 7.66174 7.69428 8.37077 8.38187 9.48858 10.05161 10.39080 11.42208 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038103 B = 0.002915 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.665839 B = 9604.218506 C = 9984.110817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.058 0.942 4 C -0.130 4.130 5 C -0.110 4.110 6 H 0.095 0.905 7 C 0.513 3.487 8 O -0.535 6.535 9 N -0.717 5.717 10 C 0.125 3.875 11 H 0.113 0.887 12 C -0.164 4.164 13 C 0.172 3.828 14 H 0.068 0.932 15 N -0.706 5.706 16 C -0.245 4.245 17 H 0.073 0.927 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.184 4.184 25 C -0.147 4.147 26 C 0.065 3.935 27 O -0.381 6.381 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.395 0.605 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 13.083 -19.930 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.076 0.924 4 C -0.168 4.168 5 C -0.132 4.132 6 H 0.113 0.887 7 C 0.299 3.701 8 O -0.411 6.411 9 N -0.367 5.367 10 C 0.021 3.979 11 H 0.130 0.870 12 C -0.204 4.204 13 C 0.059 3.941 14 H 0.086 0.914 15 N -0.344 5.344 16 C -0.376 4.376 17 H 0.091 0.909 18 C -0.208 4.208 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.227 4.227 25 C -0.185 4.185 26 C -0.012 4.012 27 O -0.300 6.300 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.228 0.772 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.398 12.631 -19.287 23.926 hybrid contribution 0.763 0.044 0.782 1.093 sum -5.635 12.675 -18.505 23.126 Atomic orbital electron populations 1.21758 0.92840 1.03209 1.02394 1.22144 0.95332 0.94800 0.84863 0.92447 1.22060 0.93087 1.03272 0.98384 1.21400 0.97802 1.00216 0.93762 0.88685 1.20503 0.82723 0.80412 0.86466 1.90731 1.55643 1.49233 1.45539 1.46138 1.06660 1.55783 1.28108 1.22630 0.94979 0.94661 0.85659 0.86953 1.23894 0.95399 1.01245 0.99884 1.20939 0.95770 0.89743 0.87679 0.91378 1.42209 1.43606 1.33988 1.14597 1.19313 1.14209 1.11930 0.92157 0.90875 1.24794 0.99027 0.98131 0.98865 1.69675 1.32489 1.19974 1.35585 0.86091 0.78756 0.77289 0.83865 1.20485 1.21788 1.21802 1.24345 1.01018 0.98616 0.98699 1.22203 1.01422 1.01170 0.93739 1.22538 0.81196 0.99454 0.98021 1.87942 1.20806 1.78077 1.43153 0.90911 0.91889 0.91612 0.90006 0.90112 0.77170 0.90901 0.90396 0.77969 0.93395 0.91353 0.91094 0.90277 0.90246 0.88518 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.57 37.16 0.36 -0.78 16 2 C 0.09 0.77 3.26 -26.68 -0.09 0.68 16 3 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.13 -1.38 4.02 -26.59 -0.11 -1.49 16 5 C -0.11 -1.10 2.61 -91.59 -0.24 -1.34 16 6 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 7 C 0.51 7.29 7.16 -10.98 -0.08 7.21 16 8 O -0.54 -10.22 15.57 5.56 0.09 -10.14 16 9 N -0.72 -9.25 5.26 -53.02 -0.28 -9.53 16 10 C 0.12 2.06 4.12 -67.12 -0.28 1.78 16 11 H 0.11 2.28 7.46 -51.93 -0.39 1.89 16 12 C -0.16 -2.58 7.57 -25.92 -0.20 -2.77 16 13 C 0.17 3.35 4.57 -67.02 -0.31 3.04 16 14 H 0.07 1.30 8.10 -51.93 -0.42 0.87 16 15 N -0.71 -17.74 5.31 -52.54 -0.28 -18.01 16 16 C -0.25 -6.80 9.97 -15.06 -0.15 -6.95 16 17 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 20 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C -0.18 -3.24 7.68 -25.82 -0.20 -3.44 16 25 C -0.15 -1.21 5.30 -26.59 -0.14 -1.35 16 26 C 0.06 0.48 6.84 37.20 0.25 0.74 16 27 O -0.38 -3.81 10.41 -35.23 -0.37 -4.18 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.08 1.03 8.02 -51.93 -0.42 0.61 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.39 3.71 8.24 -40.82 -0.34 3.38 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 36 H 0.39 10.41 7.90 -40.82 -0.32 10.09 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.08 0.50 7.70 -51.93 -0.40 0.10 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -33.20 348.04 -8.48 -41.68 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.32 Total: 10.27 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.27 Total: -5.11 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.17 Total: -55.16 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.28 Total: -14.31 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.20 -8.48 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020834762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.661 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds