Wall clock time and date at job start Tue Mar 31 2020 05:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.48092 * 2 1 4 4 C 1.53096 * 109.48385 * 120.02539 * 2 1 3 5 5 C 1.53170 * 109.16626 * 177.60442 * 4 2 1 6 6 H 1.08998 * 109.54668 * 62.97193 * 5 4 2 7 7 C 1.50703 * 109.54299 * 183.15161 * 5 4 2 8 8 O 1.21278 * 120.00183 * 0.02562 * 7 5 4 9 9 N 1.34783 * 119.99755 * 179.97438 * 7 5 4 10 10 C 1.46499 * 119.99531 * 180.02562 * 9 7 5 11 11 H 1.08996 * 112.85385 * 23.80181 * 10 9 7 12 12 C 1.53781 * 113.61225 * 155.00207 * 10 9 7 13 13 C 1.53786 * 87.17350 * 139.93836 * 12 10 9 14 14 H 1.09000 * 113.61138 * 220.06261 * 13 12 10 15 15 N 1.46496 * 113.61518 * 89.15486 * 13 12 10 16 16 C 1.36940 * 119.99538 * 154.99700 * 15 13 12 17 17 H 1.07999 * 120.00330 * 0.02562 * 16 15 13 18 18 C 1.38814 * 119.99727 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00132 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46947 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47288 * 119.99638 * 20 18 16 23 23 H 1.48499 * 109.46888 * 240.00026 * 20 18 16 24 24 C 1.53782 * 113.61191 * 252.49880 * 10 9 7 25 25 C 1.53182 * 109.03330 * 303.01642 * 5 4 2 26 26 C 1.53086 * 109.16300 * 56.98419 * 25 5 4 27 27 O 1.42908 * 109.41395 * 302.38518 * 26 25 5 28 28 H 1.08998 * 109.46833 * 299.97225 * 1 2 3 29 29 H 1.08997 * 109.47238 * 59.97584 * 1 2 3 30 30 H 1.09009 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.52149 * 57.69317 * 4 2 1 32 32 H 1.09000 * 109.56941 * 297.54178 * 4 2 1 33 33 H 0.96997 * 119.99692 * 0.02562 * 9 7 5 34 34 H 1.09002 * 113.61445 * 254.52836 * 12 10 9 35 35 H 1.09002 * 113.61408 * 25.34566 * 12 10 9 36 36 H 0.97001 * 120.00117 * 335.00621 * 15 13 12 37 37 H 0.96996 * 120.00477 * 180.02562 * 19 18 16 38 38 H 1.08997 * 113.61668 * 334.56642 * 24 10 9 39 39 H 1.08994 * 113.61387 * 105.47377 * 24 10 9 40 40 H 1.08999 * 109.51739 * 176.88684 * 25 5 4 41 41 H 1.08997 * 109.52051 * 297.07316 * 25 5 4 42 42 H 1.09002 * 109.47936 * 182.40698 * 26 25 5 43 43 H 1.08995 * 109.49299 * 62.37897 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7705 1.2124 6 1 3.9689 0.2439 1.2426 7 6 4.0800 -1.5472 2.3994 8 8 3.2971 -2.0170 3.1975 9 7 5.4053 -1.7204 2.5734 10 6 5.8999 -2.4759 3.7270 11 1 5.1624 -3.1733 4.1241 12 6 7.2850 -3.1053 3.5032 13 6 7.6157 -2.7073 4.9513 14 1 8.6309 -2.3317 5.0799 15 7 7.2566 -3.7294 5.9375 16 6 7.9110 -3.7810 7.1393 17 1 8.6915 -3.0681 7.3603 18 6 7.5710 -4.7498 8.0735 19 7 6.6202 -5.6190 7.8040 20 14 8.4631 -4.8199 9.7132 21 1 9.4819 -3.7409 9.7690 22 1 7.4862 -4.6365 10.8165 23 1 9.1309 -6.1385 9.8574 24 6 6.5601 -1.5965 4.8020 25 6 4.0178 -1.4597 -0.0807 26 6 3.4310 -0.7091 -1.2788 27 8 2.0068 -0.6742 -1.1663 28 1 -0.3633 0.5134 0.8902 29 1 -0.3633 0.5142 -0.8897 30 1 -0.3634 -1.0278 -0.0005 31 1 1.6445 -1.7375 1.2710 32 1 1.7147 -0.1852 2.1404 33 1 6.0314 -1.3449 1.9348 34 1 7.2542 -4.1830 3.3427 35 1 7.8865 -2.5836 2.7587 36 1 6.5554 -4.3696 5.7391 37 1 6.3823 -6.2958 8.4569 38 1 6.9641 -0.6615 4.4138 39 1 5.9441 -1.4562 5.6901 40 1 5.1061 -1.4492 -0.1417 41 1 3.6617 -2.4899 -0.0861 42 1 3.7104 -1.2200 -2.2002 43 1 3.8193 0.3092 -1.2958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020834762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:07 Heat of formation + Delta-G solvation = -90.566253 kcal Electronic energy + Delta-G solvation = -22307.791983 eV Core-core repulsion = 18966.197526 eV Total energy + Delta-G solvation = -3341.594457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.51822 -40.22765 -39.13361 -35.76615 -34.90344 -34.10399 -33.54090 -31.63238 -28.87449 -26.82219 -26.51639 -25.71696 -24.19324 -23.52483 -21.87282 -21.05121 -20.16435 -19.36597 -18.11836 -17.50036 -17.20968 -16.79267 -16.65404 -16.22820 -15.73903 -15.62160 -15.20530 -15.15250 -14.81847 -14.46413 -14.08341 -13.62293 -13.53418 -13.33005 -13.29466 -13.17378 -12.85362 -12.82115 -12.61434 -12.37936 -12.13779 -12.09318 -11.84033 -11.75539 -11.70181 -11.42515 -11.33623 -10.94404 -10.84953 -10.36215 -9.97719 -9.04976 -7.97578 -5.27623 1.46060 1.47504 1.57570 1.60106 2.19799 2.53845 2.87891 3.34543 3.55144 3.61965 3.66932 3.75188 3.84051 3.89549 3.94533 4.20229 4.21807 4.28746 4.31871 4.46830 4.48704 4.54921 4.71550 4.76809 4.80063 4.82220 4.83422 4.98546 5.00648 5.05905 5.10870 5.14276 5.24125 5.25837 5.30268 5.33717 5.49866 5.68689 6.24996 6.33344 6.60691 7.29255 7.30634 8.05608 8.26618 9.26254 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038103 B = 0.002915 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.665839 B = 9604.218506 C = 9984.110817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.090 3.910 3 H 0.080 0.920 4 C -0.130 4.130 5 C -0.101 4.101 6 H 0.129 0.871 7 C 0.508 3.492 8 O -0.594 6.594 9 N -0.698 5.698 10 C 0.129 3.871 11 H 0.065 0.935 12 C -0.137 4.137 13 C 0.150 3.850 14 H 0.080 0.920 15 N -0.725 5.725 16 C -0.242 4.242 17 H 0.083 0.917 18 C -0.081 4.081 19 N -0.973 5.973 20 Si 0.977 3.023 21 H -0.261 1.261 22 H -0.297 1.297 23 H -0.292 1.292 24 C -0.170 4.170 25 C -0.143 4.143 26 C 0.061 3.939 27 O -0.402 6.402 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.418 0.582 34 H 0.058 0.942 35 H 0.128 0.872 36 H 0.371 0.629 37 H 0.251 0.749 38 H 0.108 0.892 39 H 0.032 0.968 40 H 0.107 0.893 41 H 0.055 0.945 42 H 0.111 0.889 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.817 15.727 -22.111 27.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.033 3.967 3 H 0.098 0.902 4 C -0.168 4.168 5 C -0.122 4.122 6 H 0.147 0.853 7 C 0.296 3.704 8 O -0.474 6.474 9 N -0.349 5.349 10 C 0.024 3.976 11 H 0.083 0.917 12 C -0.177 4.177 13 C 0.039 3.961 14 H 0.098 0.902 15 N -0.362 5.362 16 C -0.373 4.373 17 H 0.101 0.899 18 C -0.273 4.273 19 N -0.623 5.623 20 Si 0.806 3.194 21 H -0.185 1.185 22 H -0.224 1.224 23 H -0.220 1.220 24 C -0.212 4.212 25 C -0.181 4.181 26 C -0.015 4.015 27 O -0.321 6.321 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.256 0.744 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.202 0.798 37 H 0.059 0.941 38 H 0.126 0.874 39 H 0.051 0.949 40 H 0.126 0.874 41 H 0.074 0.926 42 H 0.129 0.871 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.337 15.345 -21.541 26.801 hybrid contribution 0.132 -0.720 1.391 1.572 sum -4.204 14.626 -20.149 25.250 Atomic orbital electron populations 1.21792 0.92576 1.02621 1.03362 1.22171 0.95708 0.95316 0.83549 0.90244 1.22039 0.93880 1.01642 0.99283 1.21429 0.97097 1.01217 0.92418 0.85346 1.21348 0.82479 0.79718 0.86892 1.90718 1.57138 1.51670 1.47917 1.45869 1.06888 1.54883 1.27308 1.22158 0.94512 0.94148 0.86785 0.91717 1.23736 0.94707 1.00990 0.98225 1.21295 0.96610 0.89401 0.88778 0.90210 1.42426 1.43261 1.35199 1.15317 1.19761 1.13531 1.11109 0.92946 0.89877 1.25666 1.00418 0.98488 1.02683 1.69848 1.34722 1.21109 1.36664 0.85020 0.77675 0.77497 0.79247 1.18492 1.22437 1.21951 1.24210 0.99638 0.99738 0.97660 1.22223 1.03154 0.99712 0.92983 1.22749 0.79869 1.00881 0.97982 1.87929 1.22530 1.78433 1.43244 0.89983 0.90861 0.93029 0.93149 0.90995 0.74358 0.92269 0.85373 0.79776 0.94057 0.87398 0.94942 0.87437 0.92646 0.87064 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.57 71.98 0.69 -1.49 16 2 C 0.09 1.45 3.26 30.63 0.10 1.55 16 3 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.13 -2.73 4.02 30.68 0.12 -2.60 16 5 C -0.10 -1.80 2.61 -11.42 -0.03 -1.83 16 6 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 7 C 0.51 14.09 7.16 87.66 0.63 14.72 16 8 O -0.59 -23.79 15.57 -3.02 -0.05 -23.83 16 9 N -0.70 -16.47 5.26 -440.03 -2.32 -18.78 16 10 C 0.13 4.21 4.12 45.52 0.19 4.39 16 11 H 0.06 2.78 7.46 -2.39 -0.02 2.76 16 12 C -0.14 -3.99 7.57 31.12 0.24 -3.75 16 13 C 0.15 5.66 4.57 45.58 0.21 5.87 16 14 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 15 N -0.72 -37.17 5.31 -320.15 -1.70 -38.87 16 16 C -0.24 -13.53 9.97 84.03 0.84 -12.70 16 17 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 18 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 19 N -0.97 -61.49 13.06 21.65 0.28 -61.21 16 20 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 24 C -0.17 -5.79 7.68 31.18 0.24 -5.55 16 25 C -0.14 -1.95 5.30 30.68 0.16 -1.79 16 26 C 0.06 0.70 6.84 72.01 0.49 1.20 16 27 O -0.40 -7.22 10.41 -148.98 -1.55 -8.77 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.05 1.35 8.02 -2.38 -0.02 1.33 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.42 5.94 8.24 -92.71 -0.76 5.17 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.13 2.48 8.12 -2.39 -0.02 2.47 16 36 H 0.37 20.94 7.90 -92.71 -0.73 20.21 16 37 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.11 0.86 7.70 -2.39 -0.02 0.84 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -77.31 348.04 0.54 -76.77 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.50 Total: 32.16 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 4.34 Total: -6.24 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -3.73 Total: -118.86 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.60 Total: -32.61 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -77.31 0.54 -76.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020834762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.797 kcal (2) G-P(sol) polarization free energy of solvation -77.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds