Wall clock time and date at job start Tue Mar 31 2020 05:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.48771 * 2 1 4 4 C 1.53091 * 109.47846 * 120.02428 * 2 1 3 5 5 C 1.53182 * 109.16039 * 177.59170 * 4 2 1 6 6 H 1.09000 * 109.54333 * 183.06627 * 5 4 2 7 7 C 1.50694 * 109.54271 * 62.88762 * 5 4 2 8 8 O 1.21280 * 120.00219 * 0.02562 * 7 5 4 9 9 N 1.34785 * 120.00021 * 180.02562 * 7 5 4 10 10 C 1.46491 * 119.99873 * 180.02562 * 9 7 5 11 11 H 1.09000 * 112.85566 * 23.80309 * 10 9 7 12 12 C 1.53791 * 113.61423 * 154.99986 * 10 9 7 13 13 C 1.53780 * 87.08107 * 89.11086 * 12 10 9 14 14 H 1.08996 * 113.62260 * 270.80279 * 13 12 10 15 15 N 1.46505 * 113.61139 * 139.98168 * 13 12 10 16 16 C 1.36931 * 119.99788 * 156.53173 * 15 13 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 13 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 C 1.53791 * 87.17106 * 25.39428 * 13 12 10 25 25 C 1.53181 * 109.03577 * 303.02220 * 5 4 2 26 26 C 1.53094 * 109.16320 * 56.97769 * 25 5 4 27 27 O 1.42896 * 109.41844 * 302.39501 * 26 25 5 28 28 H 1.09006 * 109.47026 * 299.97623 * 1 2 3 29 29 H 1.08998 * 109.47091 * 59.96834 * 1 2 3 30 30 H 1.08996 * 109.47516 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.51961 * 57.68836 * 4 2 1 32 32 H 1.08997 * 109.57924 * 297.52533 * 4 2 1 33 33 H 0.97007 * 119.99664 * 359.97438 * 9 7 5 34 34 H 1.08999 * 113.60762 * 334.56820 * 12 10 9 35 35 H 1.08995 * 113.61663 * 203.66727 * 12 10 9 36 36 H 0.97000 * 119.99792 * 336.52968 * 15 13 12 37 37 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 38 38 H 1.09000 * 113.61165 * 89.15635 * 24 13 12 39 39 H 1.08997 * 113.61059 * 220.05721 * 24 13 12 40 40 H 1.09000 * 109.52240 * 176.88489 * 25 5 4 41 41 H 1.09002 * 109.52102 * 297.07591 * 25 5 4 42 42 H 1.09005 * 109.47833 * 182.40641 * 26 25 5 43 43 H 1.09003 * 109.47482 * 62.37851 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 3.5711 -0.7708 1.2122 6 1 3.9392 -1.3312 2.0716 7 6 4.1211 0.6317 1.2517 8 8 3.3649 1.5783 1.3051 9 7 5.4535 0.8340 1.2278 10 6 5.9881 2.1973 1.2668 11 1 5.2969 2.9104 1.7160 12 6 7.4157 2.2832 1.8322 13 6 7.9142 2.0718 0.3929 14 1 8.0442 1.0232 0.1254 15 7 9.0754 2.8953 0.0472 16 6 9.9139 2.5067 -0.9632 17 1 9.7190 1.5933 -1.5055 18 6 11.0110 3.2900 -1.2946 19 7 11.2482 4.4034 -0.6341 20 14 12.1506 2.7638 -2.6781 21 1 11.3810 2.6699 -3.9446 22 1 13.2374 3.7639 -2.8316 23 1 12.7395 1.4388 -2.3574 24 6 6.5757 2.6659 -0.0768 25 6 4.0176 -1.4600 -0.0809 26 6 3.4306 -0.7093 -1.2790 27 8 2.0065 -0.6742 -1.1664 28 1 -0.3633 0.5135 0.8903 29 1 -0.3633 0.5143 -0.8897 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6442 -1.7374 1.2710 32 1 1.7149 -0.1852 2.1405 33 1 6.0583 0.0767 1.1854 34 1 7.6682 1.4648 2.5064 35 1 7.6650 3.2622 2.2414 36 1 9.2502 3.7159 0.5340 37 1 12.0151 4.9506 -0.8655 38 1 6.5952 3.7498 -0.1906 39 1 6.1513 2.1560 -0.9416 40 1 5.1059 -1.4497 -0.1421 41 1 3.6613 -2.4901 -0.0863 42 1 3.7099 -1.2204 -2.2005 43 1 3.8192 0.3089 -1.2958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020834764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:10 Heat of formation + Delta-G solvation = -62.330313 kcal Electronic energy + Delta-G solvation = -22883.169965 eV Core-core repulsion = 19542.799910 eV Total energy + Delta-G solvation = -3340.370055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84072 -39.02724 -37.62908 -34.24508 -33.83781 -32.99569 -32.23151 -29.87221 -28.06761 -25.35915 -25.16020 -24.26000 -23.03637 -22.24479 -21.56047 -19.75721 -18.98466 -17.19515 -16.84538 -16.40072 -16.35901 -15.76366 -15.26858 -15.02996 -14.62142 -14.29745 -14.01814 -13.82638 -13.58218 -12.92308 -12.71243 -12.63378 -12.56001 -12.17641 -12.10557 -12.04322 -11.88947 -11.64254 -11.25935 -10.94886 -10.90361 -10.81475 -10.59345 -10.34051 -10.27310 -9.95445 -9.84240 -9.59440 -9.31076 -8.94378 -8.80699 -7.01861 -5.82878 -3.12171 2.58285 3.16094 3.40112 3.44825 3.45834 3.68124 4.35812 4.48439 4.54579 4.55193 4.74674 4.88288 5.01666 5.08331 5.16922 5.24559 5.32926 5.38664 5.42902 5.44497 5.46348 5.54241 5.61909 5.70815 5.75758 5.82259 5.83519 5.88077 6.01300 6.05653 6.16419 6.20978 6.28328 6.47637 6.58635 6.65750 7.04214 7.16729 7.54667 7.63524 8.23450 8.35423 9.46644 10.03751 10.38097 11.39369 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028223 B = 0.003469 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.866520 B = 8070.112533 C = 8538.215943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 H 0.085 0.915 4 C -0.126 4.126 5 C -0.113 4.113 6 H 0.101 0.899 7 C 0.516 3.484 8 O -0.540 6.540 9 N -0.705 5.705 10 C 0.114 3.886 11 H 0.095 0.905 12 C -0.159 4.159 13 C 0.167 3.833 14 H 0.072 0.928 15 N -0.712 5.712 16 C -0.247 4.247 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.175 4.175 25 C -0.147 4.147 26 C 0.059 3.941 27 O -0.383 6.383 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.400 0.600 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.615 -12.309 4.864 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 H 0.103 0.897 4 C -0.164 4.164 5 C -0.135 4.135 6 H 0.119 0.881 7 C 0.303 3.697 8 O -0.417 6.417 9 N -0.355 5.355 10 C 0.009 3.991 11 H 0.113 0.887 12 C -0.198 4.198 13 C 0.055 3.945 14 H 0.090 0.910 15 N -0.350 5.350 16 C -0.378 4.378 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.217 4.217 25 C -0.185 4.185 26 C -0.018 4.018 27 O -0.302 6.302 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.234 0.766 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.127 -11.758 4.624 22.096 hybrid contribution 1.352 -0.237 -0.390 1.427 sum -16.775 -11.994 4.234 21.052 Atomic orbital electron populations 1.21731 0.93415 1.02318 1.02401 1.22377 0.94829 0.97071 0.84137 0.89689 1.21991 0.92821 1.01688 0.99926 1.21443 0.97689 0.94020 1.00316 0.88119 1.20558 0.82376 0.91148 0.75666 1.90642 1.57496 1.43981 1.49588 1.45758 1.06591 1.08962 1.74184 1.21874 0.94905 0.83149 0.99185 0.88677 1.23836 0.93949 1.02596 0.99462 1.21611 0.86611 0.94947 0.91364 0.91004 1.42392 1.26395 1.25857 1.40394 1.19236 1.03880 1.05376 1.09316 0.91182 1.24770 0.98998 0.97175 0.99821 1.69647 1.30450 1.14773 1.43088 0.86263 0.80441 0.77461 0.81989 1.21188 1.21641 1.21210 1.24327 0.99976 1.01881 0.95538 1.22202 1.01668 1.00609 0.94009 1.22549 0.81391 0.99872 0.97978 1.87885 1.20587 1.78195 1.43543 0.91153 0.92006 0.92276 0.90681 0.90216 0.76585 0.91783 0.89036 0.78002 0.93335 0.89616 0.92524 0.90149 0.89853 0.88546 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.56 37.16 0.36 -0.99 16 2 C 0.07 0.85 2.97 -26.68 -0.08 0.77 16 3 H 0.09 1.21 5.80 -51.93 -0.30 0.91 16 4 C -0.13 -1.24 4.56 -26.59 -0.12 -1.36 16 5 C -0.11 -1.08 3.04 -91.59 -0.28 -1.35 16 6 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 7 C 0.52 6.54 5.82 -10.98 -0.06 6.47 16 8 O -0.54 -8.65 13.44 5.56 0.07 -8.58 16 9 N -0.70 -8.57 5.14 -52.93 -0.27 -8.84 16 10 C 0.11 1.67 4.33 -67.03 -0.29 1.38 16 11 H 0.10 1.49 7.46 -51.93 -0.39 1.10 16 12 C -0.16 -2.44 7.58 -25.91 -0.20 -2.64 16 13 C 0.17 3.12 4.34 -67.11 -0.29 2.83 16 14 H 0.07 1.30 8.11 -51.93 -0.42 0.87 16 15 N -0.71 -17.36 5.41 -52.63 -0.28 -17.65 16 16 C -0.25 -6.71 9.97 -15.06 -0.15 -6.86 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 20 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 C -0.17 -3.02 7.69 -25.82 -0.20 -3.21 16 25 C -0.15 -1.27 5.57 -26.59 -0.15 -1.42 16 26 C 0.06 0.64 6.62 37.21 0.25 0.89 16 27 O -0.38 -4.78 10.41 -35.23 -0.37 -5.15 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.79 8.03 -51.93 -0.42 0.38 16 33 H 0.40 4.01 8.12 -40.82 -0.33 3.68 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 36 H 0.39 10.02 7.91 -40.82 -0.32 9.69 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.61 7.52 -51.93 -0.39 0.22 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -31.59 341.88 -8.46 -40.05 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -7.15 Total: 10.99 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.31 Total: -5.91 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.17 Total: -53.54 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.29 Total: -13.73 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.59 -8.46 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020834764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.283 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds