Wall clock time and date at job start Tue Mar 31 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.48771 * 2 1 4 4 C 1.53091 * 109.47846 * 120.02428 * 2 1 3 5 5 C 1.53182 * 109.16039 * 177.59170 * 4 2 1 6 6 H 1.09000 * 109.54333 * 183.06627 * 5 4 2 7 7 C 1.50694 * 109.54271 * 62.88762 * 5 4 2 8 8 O 1.21280 * 120.00219 * 0.02562 * 7 5 4 9 9 N 1.34785 * 120.00021 * 180.02562 * 7 5 4 10 10 C 1.46491 * 119.99873 * 180.02562 * 9 7 5 11 11 H 1.09000 * 112.85566 * 23.80309 * 10 9 7 12 12 C 1.53791 * 113.61423 * 154.99986 * 10 9 7 13 13 C 1.53780 * 87.08107 * 89.11086 * 12 10 9 14 14 H 1.08996 * 113.62260 * 270.80279 * 13 12 10 15 15 N 1.46505 * 113.61139 * 139.98168 * 13 12 10 16 16 C 1.36931 * 119.99788 * 156.53173 * 15 13 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 13 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 C 1.53791 * 87.17106 * 25.39428 * 13 12 10 25 25 C 1.53181 * 109.03577 * 303.02220 * 5 4 2 26 26 C 1.53094 * 109.16320 * 56.97769 * 25 5 4 27 27 O 1.42896 * 109.41844 * 302.39501 * 26 25 5 28 28 H 1.09006 * 109.47026 * 299.97623 * 1 2 3 29 29 H 1.08998 * 109.47091 * 59.96834 * 1 2 3 30 30 H 1.08996 * 109.47516 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.51961 * 57.68836 * 4 2 1 32 32 H 1.08997 * 109.57924 * 297.52533 * 4 2 1 33 33 H 0.97007 * 119.99664 * 359.97438 * 9 7 5 34 34 H 1.08999 * 113.60762 * 334.56820 * 12 10 9 35 35 H 1.08995 * 113.61663 * 203.66727 * 12 10 9 36 36 H 0.97000 * 119.99792 * 336.52968 * 15 13 12 37 37 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 38 38 H 1.09000 * 113.61165 * 89.15635 * 24 13 12 39 39 H 1.08997 * 113.61059 * 220.05721 * 24 13 12 40 40 H 1.09000 * 109.52240 * 176.88489 * 25 5 4 41 41 H 1.09002 * 109.52102 * 297.07591 * 25 5 4 42 42 H 1.09005 * 109.47833 * 182.40641 * 26 25 5 43 43 H 1.09003 * 109.47482 * 62.37851 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 3.5711 -0.7708 1.2122 6 1 3.9392 -1.3312 2.0716 7 6 4.1211 0.6317 1.2517 8 8 3.3649 1.5783 1.3051 9 7 5.4535 0.8340 1.2278 10 6 5.9881 2.1973 1.2668 11 1 5.2969 2.9104 1.7160 12 6 7.4157 2.2832 1.8322 13 6 7.9142 2.0718 0.3929 14 1 8.0442 1.0232 0.1254 15 7 9.0754 2.8953 0.0472 16 6 9.9139 2.5067 -0.9632 17 1 9.7190 1.5933 -1.5055 18 6 11.0110 3.2900 -1.2946 19 7 11.2482 4.4034 -0.6341 20 14 12.1506 2.7638 -2.6781 21 1 11.3810 2.6699 -3.9446 22 1 13.2374 3.7639 -2.8316 23 1 12.7395 1.4388 -2.3574 24 6 6.5757 2.6659 -0.0768 25 6 4.0176 -1.4600 -0.0809 26 6 3.4306 -0.7093 -1.2790 27 8 2.0065 -0.6742 -1.1664 28 1 -0.3633 0.5135 0.8903 29 1 -0.3633 0.5143 -0.8897 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6442 -1.7374 1.2710 32 1 1.7149 -0.1852 2.1405 33 1 6.0583 0.0767 1.1854 34 1 7.6682 1.4648 2.5064 35 1 7.6650 3.2622 2.2414 36 1 9.2502 3.7159 0.5340 37 1 12.0151 4.9506 -0.8655 38 1 6.5952 3.7498 -0.1906 39 1 6.1513 2.1560 -0.9416 40 1 5.1059 -1.4497 -0.1421 41 1 3.6613 -2.4901 -0.0863 42 1 3.7099 -1.2204 -2.2005 43 1 3.8192 0.3089 -1.2958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020834764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:09 Heat of formation + Delta-G solvation = -84.288311 kcal Electronic energy + Delta-G solvation = -22884.122136 eV Core-core repulsion = 19542.799910 eV Total energy + Delta-G solvation = -3341.322225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.81691 -40.20502 -38.78375 -35.79494 -34.91483 -34.05991 -33.38539 -31.71377 -28.84389 -26.74493 -26.52124 -25.62089 -24.11176 -23.51301 -22.56528 -20.71762 -20.38038 -19.13017 -17.88990 -17.28736 -17.26231 -16.89758 -16.68277 -16.17183 -15.83492 -15.69960 -15.33129 -15.00700 -14.81707 -14.29819 -13.81578 -13.55234 -13.47355 -13.35415 -13.29677 -13.24120 -12.91658 -12.81456 -12.77600 -12.57283 -12.21729 -12.03750 -11.86906 -11.74832 -11.68835 -11.45332 -11.20892 -10.84268 -10.78697 -10.23097 -10.00063 -8.99691 -7.95110 -5.23763 1.47904 1.50489 1.56510 1.59694 2.15132 2.56522 2.85420 3.36410 3.55750 3.68686 3.71099 3.77984 3.86079 3.95111 3.97797 4.12227 4.28618 4.31180 4.31879 4.43536 4.54581 4.68245 4.70029 4.74313 4.81567 4.86287 4.89308 4.91115 4.97767 5.05549 5.08911 5.11890 5.19971 5.22563 5.26648 5.33495 5.50416 5.71268 6.26768 6.30583 6.57126 7.26062 7.33047 8.09701 8.31868 9.28073 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028223 B = 0.003469 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.866520 B = 8070.112533 C = 8538.215943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.051 0.949 4 C -0.124 4.124 5 C -0.108 4.108 6 H 0.134 0.866 7 C 0.513 3.487 8 O -0.577 6.577 9 N -0.697 5.697 10 C 0.135 3.865 11 H 0.087 0.913 12 C -0.142 4.142 13 C 0.154 3.846 14 H 0.084 0.916 15 N -0.728 5.728 16 C -0.245 4.245 17 H 0.079 0.921 18 C -0.076 4.076 19 N -0.971 5.971 20 Si 0.972 3.028 21 H -0.280 1.280 22 H -0.298 1.298 23 H -0.274 1.274 24 C -0.172 4.172 25 C -0.140 4.140 26 C 0.051 3.949 27 O -0.397 6.397 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.414 0.586 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.177 -15.229 5.361 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 H 0.069 0.931 4 C -0.162 4.162 5 C -0.129 4.129 6 H 0.152 0.848 7 C 0.301 3.699 8 O -0.457 6.457 9 N -0.348 5.348 10 C 0.028 3.972 11 H 0.105 0.895 12 C -0.181 4.181 13 C 0.044 3.956 14 H 0.102 0.898 15 N -0.366 5.366 16 C -0.377 4.377 17 H 0.097 0.903 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.801 3.199 21 H -0.206 1.206 22 H -0.225 1.225 23 H -0.200 1.200 24 C -0.215 4.215 25 C -0.178 4.178 26 C -0.025 4.025 27 O -0.317 6.317 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.251 0.749 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -18.725 -14.747 5.125 24.379 hybrid contribution 1.415 0.671 -0.562 1.663 sum -17.310 -14.076 4.563 22.773 Atomic orbital electron populations 1.21735 0.92126 1.03186 1.02576 1.22395 0.95984 0.95592 0.84996 0.93078 1.21986 0.93129 1.02499 0.98546 1.21522 0.97341 0.91900 1.02118 0.84841 1.21236 0.81963 0.92287 0.74393 1.90643 1.58348 1.45586 1.51079 1.45646 1.06943 1.08217 1.73960 1.21503 0.94416 0.84506 0.96772 0.89498 1.23644 0.93552 1.03217 0.97697 1.21961 0.85004 0.94767 0.93832 0.89773 1.42602 1.27725 1.26212 1.40014 1.19675 1.03680 1.05091 1.09247 0.90294 1.25577 1.01062 0.97608 1.02604 1.69808 1.31059 1.16186 1.45072 0.85234 0.78253 0.77130 0.79297 1.20593 1.22456 1.20013 1.24170 0.99592 1.00632 0.97064 1.22204 1.02452 1.01044 0.92070 1.22682 0.80863 0.98930 1.00041 1.87866 1.21496 1.78090 1.44216 0.90200 0.92708 0.90961 0.88460 0.90521 0.74927 0.89324 0.89725 0.79445 0.94046 0.91616 0.92813 0.88675 0.87675 0.87275 0.95731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.56 71.98 0.69 -1.83 16 2 C 0.07 1.52 2.97 30.63 0.09 1.61 16 3 H 0.05 1.50 5.80 -2.39 -0.01 1.49 16 4 C -0.12 -2.13 4.56 30.69 0.14 -1.99 16 5 C -0.11 -1.71 3.04 -11.42 -0.03 -1.75 16 6 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 7 C 0.51 12.15 5.82 87.65 0.51 12.66 16 8 O -0.58 -18.39 13.44 -3.03 -0.04 -18.43 16 9 N -0.70 -15.45 5.14 -439.75 -2.26 -17.71 16 10 C 0.13 3.80 4.33 45.58 0.20 4.00 16 11 H 0.09 2.68 7.46 -2.39 -0.02 2.66 16 12 C -0.14 -4.14 7.58 31.12 0.24 -3.90 16 13 C 0.15 5.61 4.34 45.52 0.20 5.81 16 14 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 15 N -0.73 -35.61 5.41 -320.42 -1.73 -37.34 16 16 C -0.25 -13.25 9.97 84.04 0.84 -12.42 16 17 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 19 N -0.97 -58.99 13.06 21.65 0.28 -58.71 16 20 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C -0.17 -5.94 7.69 31.18 0.24 -5.70 16 25 C -0.14 -1.96 5.57 30.69 0.17 -1.79 16 26 C 0.05 1.05 6.62 72.01 0.48 1.53 16 27 O -0.40 -9.53 10.41 -148.98 -1.55 -11.08 16 28 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.08 1.38 8.03 -2.39 -0.02 1.36 16 33 H 0.41 6.93 8.12 -92.70 -0.75 6.17 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 36 H 0.37 19.81 7.91 -92.71 -0.73 19.07 16 37 H 0.25 14.86 8.31 -92.70 -0.77 14.08 16 38 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.09 1.07 7.52 -2.39 -0.02 1.05 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.02 0.62 7.38 -2.39 -0.02 0.61 16 Total: -1.00 -69.50 341.88 0.47 -69.03 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.48 Total: 34.49 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 4.22 Total: -7.62 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -3.71 Total: -113.77 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -1.59 Total: -29.51 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.50 0.47 -69.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020834764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.258 kcal (2) G-P(sol) polarization free energy of solvation -69.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds