Wall clock time and date at job start Tue Mar 31 2020 05:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.48648 * 2 1 4 4 C 1.53277 * 109.46639 * 240.01052 * 2 1 3 5 5 C 1.53187 * 109.06254 * 182.44694 * 4 2 1 6 6 H 1.08996 * 109.54038 * 176.85434 * 5 4 2 7 7 C 1.50701 * 109.54172 * 297.02777 * 5 4 2 8 8 O 1.21277 * 120.00077 * 359.82550 * 7 5 4 9 9 N 1.34778 * 119.99697 * 179.82164 * 7 5 4 10 10 C 1.46503 * 119.99792 * 180.02562 * 9 7 5 11 11 H 1.09006 * 112.84737 * 336.19760 * 10 9 7 12 12 C 1.53781 * 113.69000 * 107.46423 * 10 9 7 13 13 C 1.53781 * 87.07651 * 139.99285 * 12 10 9 14 14 H 1.09008 * 113.69046 * 220.00565 * 13 12 10 15 15 N 1.46498 * 113.61726 * 89.11830 * 13 12 10 16 16 C 1.36935 * 120.00239 * 107.49677 * 15 13 12 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 C 1.53777 * 87.08462 * 334.56718 * 13 12 10 25 25 C 1.53176 * 109.10860 * 56.94185 * 5 4 2 26 26 C 1.53088 * 109.16218 * 302.97329 * 25 5 4 27 27 O 1.42904 * 109.41697 * 57.61154 * 26 25 5 28 28 H 1.08997 * 109.47015 * 299.98100 * 1 2 3 29 29 H 1.09002 * 109.46898 * 59.97330 * 1 2 3 30 30 H 1.09000 * 109.47741 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.64303 * 62.53282 * 4 2 1 32 32 H 1.09000 * 109.50563 * 302.27635 * 4 2 1 33 33 H 0.96992 * 120.00031 * 0.02562 * 9 7 5 34 34 H 1.08991 * 113.61380 * 25.44443 * 12 10 9 35 35 H 1.08999 * 113.61114 * 254.53869 * 12 10 9 36 36 H 0.97004 * 119.99747 * 287.50416 * 15 13 12 37 37 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 38 38 H 1.08997 * 113.61802 * 139.97875 * 24 13 12 39 39 H 1.09000 * 113.61784 * 270.88574 * 24 13 12 40 40 H 1.08994 * 109.52222 * 62.88045 * 25 5 4 41 41 H 1.08995 * 109.51867 * 183.06816 * 25 5 4 42 42 H 1.09000 * 109.48079 * 177.59428 * 26 25 5 43 43 H 1.08996 * 109.48381 * 297.62813 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0408 -0.7223 -1.2517 5 6 3.5714 -0.7707 -1.2118 6 1 3.9409 -1.3316 -2.0702 7 6 4.1212 0.6318 -1.2515 8 8 3.3650 1.5782 -1.3094 9 7 5.4534 0.8344 -1.2224 10 6 5.9879 2.1979 -1.2604 11 1 5.2982 2.9105 -1.7130 12 6 6.5695 2.6712 0.0822 13 6 7.6981 3.3298 -0.7287 14 1 8.6823 3.2298 -0.2707 15 7 7.3997 4.7033 -1.1415 16 6 8.0388 5.7537 -0.5387 17 1 8.7633 5.5695 0.2409 18 6 7.7557 7.0552 -0.9295 19 7 6.8768 7.2794 -1.8833 20 14 8.6281 8.4880 -0.1076 21 1 7.8397 8.9394 1.0671 22 1 9.9773 8.0563 0.3379 23 1 8.7607 9.6073 -1.0745 24 6 7.4176 2.2837 -1.8204 25 6 4.0178 -1.4598 0.0813 26 6 3.4306 -0.7090 1.2793 27 8 2.0065 -0.6741 1.1665 28 1 -0.3633 0.5135 0.8901 29 1 -0.3633 0.5143 -0.8898 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7165 -0.1850 -2.1428 32 1 1.6448 -1.7376 -1.2730 33 1 6.0581 0.0775 -1.1764 34 1 6.9094 1.8570 0.7220 35 1 5.9340 3.3854 0.6058 36 1 6.7492 4.8688 -1.8419 37 1 6.4240 6.5355 -2.3104 38 1 7.4666 2.6850 -2.8326 39 1 7.9893 1.3635 -1.7006 40 1 3.6616 -2.4899 0.0868 41 1 5.1059 -1.4494 0.1426 42 1 3.7098 -1.2199 2.2008 43 1 3.8190 0.3093 1.2961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020834765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:12 Heat of formation + Delta-G solvation = -61.779903 kcal Electronic energy + Delta-G solvation = -22952.564569 eV Core-core repulsion = 19612.218382 eV Total energy + Delta-G solvation = -3340.346187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80418 -39.03248 -37.70832 -34.40091 -33.91068 -33.06010 -32.39924 -29.44522 -28.07597 -25.36611 -25.23293 -23.90357 -23.16829 -22.51709 -21.43852 -19.88413 -18.74794 -17.55198 -16.77711 -16.45209 -16.38278 -15.98306 -15.25782 -15.02442 -14.67652 -14.19589 -14.05409 -13.83889 -13.60865 -12.98948 -12.85233 -12.59805 -12.56782 -12.22229 -12.16216 -12.07506 -12.06147 -11.55368 -11.27386 -10.95463 -10.79235 -10.68223 -10.56497 -10.32186 -10.04311 -9.98444 -9.77701 -9.31070 -9.19776 -8.95118 -8.77344 -7.09977 -6.14047 -3.15407 2.62133 3.22157 3.50786 3.55792 3.66915 3.69596 4.35253 4.46771 4.52884 4.62974 4.72907 4.86406 4.98991 5.06178 5.12714 5.23947 5.26731 5.29603 5.38024 5.44574 5.45984 5.54184 5.60757 5.70937 5.72559 5.79227 5.79938 5.83645 5.97226 6.03380 6.06791 6.14931 6.26847 6.50694 6.59083 6.66905 6.90886 7.15506 7.56475 7.78882 8.27256 8.71211 9.17063 10.03332 10.16840 11.33806 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026302 B = 0.003532 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.304763 B = 7925.981654 C = 8272.851823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 H 0.086 0.914 4 C -0.127 4.127 5 C -0.114 4.114 6 H 0.099 0.901 7 C 0.511 3.489 8 O -0.534 6.534 9 N -0.716 5.716 10 C 0.125 3.875 11 H 0.110 0.890 12 C -0.183 4.183 13 C 0.177 3.823 14 H 0.069 0.931 15 N -0.717 5.717 16 C -0.338 4.338 17 H 0.067 0.933 18 C -0.042 4.042 19 N -0.941 5.941 20 Si 1.084 2.916 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.287 1.287 24 C -0.165 4.165 25 C -0.145 4.145 26 C 0.059 3.941 27 O -0.382 6.382 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.395 0.605 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.369 0.631 37 H 0.256 0.744 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 -21.469 2.345 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 H 0.104 0.896 4 C -0.165 4.165 5 C -0.136 4.136 6 H 0.117 0.883 7 C 0.297 3.703 8 O -0.411 6.411 9 N -0.366 5.366 10 C 0.021 3.979 11 H 0.128 0.872 12 C -0.225 4.225 13 C 0.064 3.936 14 H 0.087 0.913 15 N -0.356 5.356 16 C -0.469 4.469 17 H 0.085 0.915 18 C -0.240 4.240 19 N -0.585 5.585 20 Si 0.915 3.085 21 H -0.222 1.222 22 H -0.221 1.221 23 H -0.213 1.213 24 C -0.205 4.205 25 C -0.183 4.183 26 C -0.018 4.018 27 O -0.302 6.302 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.229 0.771 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.202 0.798 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.434 -19.162 2.612 20.381 hybrid contribution 0.208 -2.082 -0.441 2.138 sum -6.227 -21.243 2.171 22.243 Atomic orbital electron populations 1.21730 0.93313 1.02275 1.02540 1.22426 0.94920 0.97103 0.84000 0.89613 1.22026 0.92791 1.01635 1.00004 1.21457 0.97805 0.94186 1.00117 0.88253 1.20602 0.82696 0.91085 0.75880 1.90681 1.57450 1.43952 1.49001 1.46147 1.06575 1.09380 1.74511 1.22619 0.94208 0.82572 0.98528 0.87169 1.24296 1.01339 1.00319 0.96569 1.20833 0.95703 0.84489 0.92586 0.91264 1.42201 1.49293 0.99850 1.44290 1.20098 1.20868 0.87707 1.18188 0.91468 1.25828 1.00341 0.98393 0.99460 1.70850 1.28164 1.33598 1.25915 0.83181 0.74696 0.75437 0.75214 1.22222 1.22076 1.21338 1.23909 0.95112 1.00468 1.01021 1.22179 1.01347 1.00586 0.94191 1.22535 0.81637 0.99816 0.97813 1.87883 1.20425 1.78233 1.43642 0.91957 0.91053 0.92298 0.90111 0.90714 0.77063 0.91178 0.91153 0.79754 0.93287 0.91048 0.90194 0.89927 0.90435 0.88696 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.56 37.16 0.36 -1.11 16 2 C 0.07 0.90 2.98 -26.59 -0.08 0.83 16 3 H 0.09 1.33 5.81 -51.93 -0.30 1.03 16 4 C -0.13 -1.33 4.58 -26.49 -0.12 -1.46 16 5 C -0.11 -1.13 3.04 -91.58 -0.28 -1.41 16 6 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 7 C 0.51 6.96 5.82 -10.98 -0.06 6.90 16 8 O -0.53 -9.57 13.45 5.56 0.07 -9.50 16 9 N -0.72 -8.94 5.24 -53.01 -0.28 -9.21 16 10 C 0.12 2.00 4.11 -67.12 -0.28 1.73 16 11 H 0.11 2.16 7.46 -51.93 -0.39 1.77 16 12 C -0.18 -3.17 7.68 -25.92 -0.20 -3.37 16 13 C 0.18 3.45 4.56 -67.12 -0.31 3.15 16 14 H 0.07 1.34 8.10 -51.92 -0.42 0.92 16 15 N -0.72 -17.91 5.31 -52.64 -0.28 -18.19 16 16 C -0.34 -9.49 9.97 -15.06 -0.15 -9.64 16 17 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 18 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 19 N -0.94 -29.34 13.70 55.49 0.76 -28.58 16 20 Si 1.08 26.00 29.92 -169.99 -5.09 20.92 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C -0.17 -2.56 7.58 -25.92 -0.20 -2.75 16 25 C -0.15 -1.21 5.57 -26.59 -0.15 -1.36 16 26 C 0.06 0.63 6.62 37.20 0.25 0.88 16 27 O -0.38 -4.90 10.41 -35.23 -0.37 -5.27 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.89 8.02 -51.93 -0.42 0.47 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 3.63 8.13 -40.82 -0.33 3.30 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.37 9.60 6.73 -40.82 -0.27 9.33 16 37 H 0.26 7.90 6.77 -40.82 -0.28 7.62 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.52 7.51 -51.93 -0.39 0.13 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -33.52 340.17 -8.40 -41.92 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.04 Total: 11.75 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.31 Total: -8.96 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.20 Total: -55.98 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.29 Total: -14.76 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.09 Total: 20.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.52 -8.40 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020834765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.862 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds