Wall clock time and date at job start Tue Mar 31 2020 05:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.48648 * 2 1 4 4 C 1.53277 * 109.46639 * 240.01052 * 2 1 3 5 5 C 1.53187 * 109.06254 * 182.44694 * 4 2 1 6 6 H 1.08996 * 109.54038 * 176.85434 * 5 4 2 7 7 C 1.50701 * 109.54172 * 297.02777 * 5 4 2 8 8 O 1.21277 * 120.00077 * 359.82550 * 7 5 4 9 9 N 1.34778 * 119.99697 * 179.82164 * 7 5 4 10 10 C 1.46503 * 119.99792 * 180.02562 * 9 7 5 11 11 H 1.09006 * 112.84737 * 336.19760 * 10 9 7 12 12 C 1.53781 * 113.69000 * 107.46423 * 10 9 7 13 13 C 1.53781 * 87.07651 * 139.99285 * 12 10 9 14 14 H 1.09008 * 113.69046 * 220.00565 * 13 12 10 15 15 N 1.46498 * 113.61726 * 89.11830 * 13 12 10 16 16 C 1.36935 * 120.00239 * 107.49677 * 15 13 12 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 C 1.53777 * 87.08462 * 334.56718 * 13 12 10 25 25 C 1.53176 * 109.10860 * 56.94185 * 5 4 2 26 26 C 1.53088 * 109.16218 * 302.97329 * 25 5 4 27 27 O 1.42904 * 109.41697 * 57.61154 * 26 25 5 28 28 H 1.08997 * 109.47015 * 299.98100 * 1 2 3 29 29 H 1.09002 * 109.46898 * 59.97330 * 1 2 3 30 30 H 1.09000 * 109.47741 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.64303 * 62.53282 * 4 2 1 32 32 H 1.09000 * 109.50563 * 302.27635 * 4 2 1 33 33 H 0.96992 * 120.00031 * 0.02562 * 9 7 5 34 34 H 1.08991 * 113.61380 * 25.44443 * 12 10 9 35 35 H 1.08999 * 113.61114 * 254.53869 * 12 10 9 36 36 H 0.97004 * 119.99747 * 287.50416 * 15 13 12 37 37 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 38 38 H 1.08997 * 113.61802 * 139.97875 * 24 13 12 39 39 H 1.09000 * 113.61784 * 270.88574 * 24 13 12 40 40 H 1.08994 * 109.52222 * 62.88045 * 25 5 4 41 41 H 1.08995 * 109.51867 * 183.06816 * 25 5 4 42 42 H 1.09000 * 109.48079 * 177.59428 * 26 25 5 43 43 H 1.08996 * 109.48381 * 297.62813 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0408 -0.7223 -1.2517 5 6 3.5714 -0.7707 -1.2118 6 1 3.9409 -1.3316 -2.0702 7 6 4.1212 0.6318 -1.2515 8 8 3.3650 1.5782 -1.3094 9 7 5.4534 0.8344 -1.2224 10 6 5.9879 2.1979 -1.2604 11 1 5.2982 2.9105 -1.7130 12 6 6.5695 2.6712 0.0822 13 6 7.6981 3.3298 -0.7287 14 1 8.6823 3.2298 -0.2707 15 7 7.3997 4.7033 -1.1415 16 6 8.0388 5.7537 -0.5387 17 1 8.7633 5.5695 0.2409 18 6 7.7557 7.0552 -0.9295 19 7 6.8768 7.2794 -1.8833 20 14 8.6281 8.4880 -0.1076 21 1 7.8397 8.9394 1.0671 22 1 9.9773 8.0563 0.3379 23 1 8.7607 9.6073 -1.0745 24 6 7.4176 2.2837 -1.8204 25 6 4.0178 -1.4598 0.0813 26 6 3.4306 -0.7090 1.2793 27 8 2.0065 -0.6741 1.1665 28 1 -0.3633 0.5135 0.8901 29 1 -0.3633 0.5143 -0.8898 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7165 -0.1850 -2.1428 32 1 1.6448 -1.7376 -1.2730 33 1 6.0581 0.0775 -1.1764 34 1 6.9094 1.8570 0.7220 35 1 5.9340 3.3854 0.6058 36 1 6.7492 4.8688 -1.8419 37 1 6.4240 6.5355 -2.3104 38 1 7.4666 2.6850 -2.8326 39 1 7.9893 1.3635 -1.7006 40 1 3.6616 -2.4899 0.0868 41 1 5.1059 -1.4494 0.1426 42 1 3.7098 -1.2199 2.2008 43 1 3.8190 0.3093 1.2961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020834765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:11 Heat of formation + Delta-G solvation = -86.354260 kcal Electronic energy + Delta-G solvation = -22953.630193 eV Core-core repulsion = 19612.218382 eV Total energy + Delta-G solvation = -3341.411811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.83239 -40.29516 -38.91538 -36.09441 -35.02604 -34.21717 -33.48442 -31.37874 -28.89022 -26.64818 -26.57468 -25.58656 -24.51544 -23.56236 -22.47915 -21.03459 -20.11830 -19.55127 -17.82368 -17.56550 -17.31321 -17.05198 -16.75929 -16.20755 -15.99269 -15.59801 -15.40834 -15.24540 -14.85749 -14.49515 -13.93287 -13.59958 -13.51148 -13.40208 -13.29817 -13.14779 -12.96423 -12.85122 -12.68130 -12.56747 -12.08257 -11.91112 -11.87426 -11.72906 -11.54772 -11.47683 -11.25522 -10.93934 -10.77099 -10.27103 -10.02416 -9.17113 -8.43772 -5.38537 1.56743 1.56806 1.67899 1.81818 2.16480 2.68903 2.81392 3.34672 3.50672 3.52521 3.64713 3.68779 3.73769 3.80291 3.93468 4.07059 4.17969 4.18883 4.26017 4.38712 4.50589 4.64482 4.65981 4.69948 4.71897 4.77120 4.83406 4.88690 4.92629 5.00609 5.02380 5.06700 5.12145 5.17882 5.21842 5.28822 5.54626 5.63625 6.26074 6.43153 6.55950 7.04136 7.26733 7.93535 8.05622 9.07486 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026302 B = 0.003532 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.304763 B = 7925.981654 C = 8272.851823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.044 0.956 4 C -0.125 4.125 5 C -0.107 4.107 6 H 0.135 0.865 7 C 0.505 3.495 8 O -0.586 6.586 9 N -0.700 5.700 10 C 0.133 3.867 11 H 0.066 0.934 12 C -0.169 4.169 13 C 0.153 3.847 14 H 0.076 0.924 15 N -0.735 5.735 16 C -0.334 4.334 17 H 0.073 0.927 18 C -0.107 4.107 19 N -0.976 5.976 20 Si 1.132 2.868 21 H -0.287 1.287 22 H -0.267 1.267 23 H -0.293 1.293 24 C -0.137 4.137 25 C -0.136 4.136 26 C 0.049 3.951 27 O -0.396 6.396 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.418 0.582 34 H 0.107 0.893 35 H 0.028 0.972 36 H 0.357 0.643 37 H 0.241 0.759 38 H 0.059 0.941 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 -24.978 2.872 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 H 0.062 0.938 4 C -0.163 4.163 5 C -0.128 4.128 6 H 0.153 0.847 7 C 0.293 3.707 8 O -0.466 6.466 9 N -0.351 5.351 10 C 0.028 3.972 11 H 0.084 0.916 12 C -0.211 4.211 13 C 0.042 3.958 14 H 0.094 0.906 15 N -0.375 5.375 16 C -0.465 4.465 17 H 0.091 0.909 18 C -0.297 4.297 19 N -0.624 5.624 20 Si 0.956 3.044 21 H -0.214 1.214 22 H -0.192 1.192 23 H -0.220 1.220 24 C -0.176 4.176 25 C -0.174 4.174 26 C -0.027 4.027 27 O -0.316 6.316 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.256 0.744 34 H 0.126 0.874 35 H 0.047 0.953 36 H 0.189 0.811 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.147 0.853 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.133 0.867 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.928 -22.776 3.164 23.517 hybrid contribution -0.273 -1.066 -0.534 1.223 sum -5.201 -23.842 2.630 24.544 Atomic orbital electron populations 1.21731 0.92174 1.03317 1.02434 1.22377 0.95994 0.95340 0.85189 0.93772 1.22021 0.93554 1.02484 0.98235 1.21540 0.97090 0.91619 1.02578 0.84738 1.21438 0.82450 0.92373 0.74445 1.90684 1.58719 1.46072 1.51106 1.45881 1.06823 1.08449 1.73968 1.22103 0.93977 0.83813 0.97345 0.91624 1.24154 0.99622 1.00267 0.97073 1.21199 0.96417 0.83021 0.95114 0.90635 1.42412 1.49129 1.01756 1.44199 1.20490 1.19921 0.88708 1.17386 0.90897 1.27303 1.00908 1.01658 0.99862 1.70972 1.30319 1.33061 1.28052 0.82578 0.75028 0.72425 0.74331 1.21449 1.19197 1.21969 1.23738 0.94458 1.00638 0.98800 1.22199 1.02758 1.00919 0.91493 1.22739 0.80761 0.98864 1.00354 1.87861 1.21786 1.77951 1.43977 0.92727 0.90610 0.90548 0.91182 0.88066 0.74402 0.87432 0.95282 0.81071 0.94818 0.92201 0.85306 0.87435 0.87925 0.86656 0.96075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.56 71.98 0.69 -2.20 16 2 C 0.07 1.71 2.98 30.69 0.09 1.80 16 3 H 0.04 1.48 5.81 -2.39 -0.01 1.46 16 4 C -0.13 -2.42 4.58 30.75 0.14 -2.28 16 5 C -0.11 -1.80 3.04 -11.42 -0.03 -1.83 16 6 H 0.13 1.40 8.14 -2.39 -0.02 1.39 16 7 C 0.50 13.32 5.82 87.66 0.51 13.83 16 8 O -0.59 -22.04 13.45 -3.02 -0.04 -22.08 16 9 N -0.70 -15.99 5.24 -440.03 -2.30 -18.30 16 10 C 0.13 4.25 4.11 45.52 0.19 4.43 16 11 H 0.07 2.74 7.46 -2.38 -0.02 2.72 16 12 C -0.17 -5.81 7.68 31.12 0.24 -5.57 16 13 C 0.15 5.88 4.56 45.52 0.21 6.09 16 14 H 0.08 2.80 8.10 -2.38 -0.02 2.78 16 15 N -0.74 -37.84 5.31 -320.45 -1.70 -39.54 16 16 C -0.33 -19.05 9.97 84.03 0.84 -18.21 16 17 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 18 C -0.11 -6.33 5.50 84.86 0.47 -5.86 16 19 N -0.98 -63.18 13.70 21.65 0.30 -62.88 16 20 Si 1.13 52.85 29.92 68.60 2.05 54.90 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 C -0.14 -3.96 7.58 31.12 0.24 -3.73 16 25 C -0.14 -1.71 5.57 30.68 0.17 -1.54 16 26 C 0.05 0.97 6.62 72.01 0.48 1.45 16 27 O -0.40 -9.81 10.41 -148.98 -1.55 -11.36 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.50 8.02 -2.39 -0.02 1.48 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.42 5.80 8.13 -92.71 -0.75 5.05 16 34 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.36 19.68 6.73 -92.71 -0.62 19.06 16 37 H 0.24 15.74 6.77 -92.71 -0.63 15.12 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.13 2.51 8.12 -2.39 -0.02 2.49 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.10 0.81 7.51 -2.39 -0.02 0.79 16 42 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.02 0.54 7.38 -2.39 -0.02 0.52 16 Total: -1.00 -78.78 340.17 0.74 -78.04 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.23 Total: 34.85 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 4.22 Total: -13.62 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -3.71 Total: -120.73 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.59 Total: -33.44 kcal Atomic # 14 Polarization: 52.85 SS G_CDS: 2.05 Total: 54.90 kcal Total: -78.78 0.74 -78.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020834765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.316 kcal (2) G-P(sol) polarization free energy of solvation -78.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds