Wall clock time and date at job start Tue Mar 31 2020 05:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49561 * 2 1 4 4 O 1.42905 * 109.48128 * 239.96896 * 2 1 3 5 5 C 1.42905 * 114.09831 * 178.85979 * 4 2 1 6 6 C 1.53092 * 109.41215 * 61.16158 * 5 4 2 7 7 C 1.53175 * 109.16344 * 302.38824 * 6 5 4 8 8 C 1.53098 * 109.47861 * 120.03136 * 2 1 3 9 9 H 1.08996 * 109.52270 * 57.68339 * 8 2 1 10 10 C 1.50701 * 109.52080 * 297.49425 * 8 2 1 11 11 O 1.21280 * 119.99850 * 0.31326 * 10 8 2 12 12 N 1.34775 * 119.99852 * 180.31852 * 10 8 2 13 13 C 1.46504 * 120.00007 * 180.02562 * 12 10 8 14 14 H 1.08999 * 112.84871 * 23.79573 * 13 12 10 15 15 C 1.53781 * 113.61497 * 154.99725 * 13 12 10 16 16 C 1.53781 * 87.07817 * 139.97969 * 15 13 12 17 17 H 1.09003 * 113.61596 * 89.19909 * 16 15 13 18 18 N 1.46509 * 113.61148 * 220.01692 * 16 15 13 19 19 C 1.36937 * 119.99954 * 205.00142 * 18 16 15 20 20 H 1.08001 * 119.99962 * 359.97438 * 19 18 16 21 21 C 1.38808 * 119.99811 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99850 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47017 * 89.99720 * 23 21 19 25 25 H 1.48500 * 109.46958 * 209.99732 * 23 21 19 26 26 H 1.48497 * 109.46864 * 329.99786 * 23 21 19 27 27 C 1.53781 * 87.08352 * 334.56324 * 16 15 13 28 28 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46705 * 300.03025 * 1 2 3 30 30 H 1.09004 * 109.46593 * 60.02691 * 1 2 3 31 31 H 1.08997 * 109.47832 * 181.14188 * 5 4 2 32 32 H 1.09000 * 109.48236 * 301.17758 * 5 4 2 33 33 H 1.09004 * 109.52333 * 62.30039 * 6 5 4 34 34 H 1.09001 * 109.52152 * 182.41684 * 6 5 4 35 35 H 1.09005 * 109.54265 * 176.84854 * 7 6 5 36 36 H 1.08996 * 109.54473 * 297.02360 * 7 6 5 37 37 H 0.97001 * 120.00195 * 359.97438 * 12 10 8 38 38 H 1.08994 * 113.60877 * 254.52641 * 15 13 12 39 39 H 1.08998 * 113.61615 * 25.42643 * 15 13 12 40 40 H 0.96999 * 119.99569 * 24.99648 * 18 16 15 41 41 H 0.97003 * 119.99466 * 179.97438 * 22 21 19 42 42 H 1.08995 * 113.61479 * 270.88581 * 27 16 15 43 43 H 1.09006 * 113.61145 * 139.97848 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 8 2.0066 -0.6742 -1.1664 5 6 3.4308 -0.7094 -1.2790 6 6 4.0176 -1.4602 -0.0808 7 6 3.5711 -0.7710 1.2122 8 6 2.0405 -0.7224 1.2496 9 1 1.6442 -1.7375 1.2709 10 6 1.5902 0.0214 2.4805 11 8 0.9214 1.0271 2.3705 12 7 1.9309 -0.4310 3.7035 13 6 1.4927 0.2918 4.9001 14 1 0.6013 0.8949 4.7276 15 6 1.4053 -0.5916 6.1559 16 6 1.9950 0.5953 6.9359 17 1 1.2414 1.2817 7.3220 18 7 2.9782 0.2017 7.9483 19 6 3.2059 1.0081 9.0314 20 1 2.6610 1.9343 9.1391 21 6 4.1378 0.6355 9.9903 22 7 4.8022 -0.4931 9.8587 23 14 4.4490 1.7358 11.4674 24 1 3.5304 1.3552 12.5704 25 1 5.8553 1.5753 11.9167 26 1 4.2086 3.1516 11.0893 27 6 2.6255 1.0521 5.6098 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5143 0.8897 30 1 -0.3633 0.5134 -0.8903 31 1 3.7100 -1.2204 -2.2004 32 1 3.8194 0.3089 -1.2958 33 1 3.6613 -2.4903 -0.0864 34 1 5.1058 -1.4510 -0.1426 35 1 3.9391 -1.3328 2.0707 36 1 3.9703 0.2428 1.2416 37 1 2.4656 -1.2355 3.7914 38 1 0.3840 -0.8398 6.4447 39 1 2.0606 -1.4620 6.1239 40 1 3.4677 -0.6300 7.8513 41 1 5.4537 -0.7532 10.5287 42 1 3.6144 0.6311 5.4286 43 1 2.5892 2.1309 5.4579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022008885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:05 Heat of formation + Delta-G solvation = -64.994484 kcal Electronic energy + Delta-G solvation = -22480.837273 eV Core-core repulsion = 19140.351691 eV Total energy + Delta-G solvation = -3340.485582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66868 -39.09996 -37.81372 -34.36163 -33.87620 -32.78452 -32.58122 -29.92793 -28.15961 -25.37650 -25.15336 -24.36019 -22.85994 -22.01806 -20.98991 -20.17125 -19.27130 -17.44559 -17.13303 -16.61797 -16.11749 -15.54238 -15.23051 -15.06267 -14.72992 -14.46745 -14.27712 -13.80638 -13.26773 -13.06640 -12.89580 -12.80546 -12.46903 -12.26773 -12.02054 -11.95356 -11.60620 -11.32670 -11.28970 -11.21312 -10.93711 -10.63278 -10.61959 -10.51483 -10.36094 -10.07313 -9.81971 -9.70246 -9.44692 -8.94021 -8.77410 -7.01848 -5.83284 -3.12224 2.60029 3.14363 3.40447 3.46098 3.47497 3.63798 4.33520 4.43704 4.47632 4.55731 4.63439 4.84157 4.96101 5.05282 5.06395 5.19798 5.25526 5.28944 5.34837 5.41671 5.44416 5.51884 5.56101 5.64504 5.79396 5.79717 5.83366 5.91183 5.97091 6.07950 6.21774 6.22898 6.27677 6.48843 6.57489 6.72247 6.98905 7.02638 7.58372 7.66023 8.24912 8.35261 9.46686 10.03023 10.37597 11.39125 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033337 B = 0.003038 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.704915 B = 9213.919442 C = 9678.520926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 H 0.066 0.934 4 O -0.379 6.379 5 C 0.058 3.942 6 C -0.154 4.154 7 C -0.115 4.115 8 C -0.140 4.140 9 H 0.104 0.896 10 C 0.521 3.479 11 O -0.541 6.541 12 N -0.711 5.711 13 C 0.117 3.883 14 H 0.109 0.891 15 C -0.159 4.159 16 C 0.169 3.831 17 H 0.080 0.920 18 N -0.710 5.710 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.175 4.175 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.399 0.601 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.079 0.921 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 -3.299 -21.037 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.051 3.949 3 H 0.084 0.916 4 O -0.298 6.298 5 C -0.019 4.019 6 C -0.192 4.192 7 C -0.153 4.153 8 C -0.161 4.161 9 H 0.122 0.878 10 C 0.306 3.694 11 O -0.419 6.419 12 N -0.360 5.360 13 C 0.012 3.988 14 H 0.127 0.873 15 C -0.199 4.199 16 C 0.056 3.944 17 H 0.098 0.902 18 N -0.348 5.348 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.218 4.218 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.827 -2.526 -21.059 21.753 hybrid contribution 1.041 -0.125 1.057 1.489 sum -3.786 -2.651 -20.002 20.529 Atomic orbital electron populations 1.21977 0.92373 1.02540 1.04009 1.21805 0.95689 0.94664 0.82702 0.91596 1.87957 1.20836 1.78226 1.42828 1.22589 0.81316 0.99710 0.98287 1.22194 1.01449 1.00594 0.94946 1.21601 0.92898 1.02106 0.98727 1.22032 0.97802 1.01817 0.94496 0.87820 1.20329 0.79492 0.84949 0.84582 1.90643 1.39093 1.25554 1.86637 1.46076 1.54554 1.29764 1.05635 1.22515 0.99105 0.95233 0.81948 0.87267 1.23864 1.01546 0.99349 0.95124 1.21355 0.91887 0.93832 0.87343 0.90214 1.42359 1.44507 1.25090 1.22868 1.19318 1.17907 1.01623 0.98729 0.90977 1.24766 0.99325 0.97564 0.99196 1.69658 1.29017 1.22989 1.36455 0.86177 0.77179 0.79876 0.82893 1.21636 1.21751 1.20666 1.24323 0.98250 0.99760 0.99439 0.92563 0.88649 0.92128 0.88795 0.93116 0.90747 0.90352 0.90583 0.91042 0.76658 0.91492 0.90010 0.78107 0.93438 0.90266 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.28 37.16 0.34 -1.32 16 2 C 0.11 1.21 2.40 -26.68 -0.06 1.14 16 3 H 0.07 0.79 8.04 -51.93 -0.42 0.38 16 4 O -0.38 -4.10 10.41 -35.23 -0.37 -4.47 16 5 C 0.06 0.47 6.84 37.20 0.25 0.72 16 6 C -0.15 -1.12 6.14 -26.59 -0.16 -1.29 16 7 C -0.12 -1.01 5.18 -26.55 -0.14 -1.14 16 8 C -0.14 -1.42 2.23 -91.63 -0.20 -1.62 16 9 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 10 C 0.52 6.69 6.88 -10.99 -0.08 6.61 16 11 O -0.54 -8.66 13.41 5.56 0.07 -8.58 16 12 N -0.71 -8.74 5.26 -53.01 -0.28 -9.02 16 13 C 0.12 1.70 4.24 -67.11 -0.28 1.41 16 14 H 0.11 1.66 7.46 -51.93 -0.39 1.28 16 15 C -0.16 -2.44 7.58 -25.92 -0.20 -2.64 16 16 C 0.17 3.23 4.48 -67.11 -0.30 2.93 16 17 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 18 N -0.71 -17.32 5.40 -52.63 -0.28 -17.60 16 19 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 23 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 C -0.18 -3.01 7.68 -25.92 -0.20 -3.21 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.10 1.19 5.73 -51.93 -0.30 0.89 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.60 7.67 -51.93 -0.40 0.20 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.40 4.09 8.21 -40.82 -0.34 3.75 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 40 H 0.38 9.88 7.92 -40.82 -0.32 9.55 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -31.16 343.75 -8.44 -39.60 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -7.20 Total: 10.44 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -1.27 Total: -5.68 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.16 Total: -53.57 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.29 Total: -13.05 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.16 -8.44 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022008885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.391 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds