Wall clock time and date at job start Tue Mar 31 2020 05:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49561 * 2 1 4 4 O 1.42905 * 109.48128 * 239.96896 * 2 1 3 5 5 C 1.42905 * 114.09831 * 178.85979 * 4 2 1 6 6 C 1.53092 * 109.41215 * 61.16158 * 5 4 2 7 7 C 1.53175 * 109.16344 * 302.38824 * 6 5 4 8 8 C 1.53098 * 109.47861 * 120.03136 * 2 1 3 9 9 H 1.08996 * 109.52270 * 57.68339 * 8 2 1 10 10 C 1.50701 * 109.52080 * 297.49425 * 8 2 1 11 11 O 1.21280 * 119.99850 * 0.31326 * 10 8 2 12 12 N 1.34775 * 119.99852 * 180.31852 * 10 8 2 13 13 C 1.46504 * 120.00007 * 180.02562 * 12 10 8 14 14 H 1.08999 * 112.84871 * 23.79573 * 13 12 10 15 15 C 1.53781 * 113.61497 * 154.99725 * 13 12 10 16 16 C 1.53781 * 87.07817 * 139.97969 * 15 13 12 17 17 H 1.09003 * 113.61596 * 89.19909 * 16 15 13 18 18 N 1.46509 * 113.61148 * 220.01692 * 16 15 13 19 19 C 1.36937 * 119.99954 * 205.00142 * 18 16 15 20 20 H 1.08001 * 119.99962 * 359.97438 * 19 18 16 21 21 C 1.38808 * 119.99811 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99850 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47017 * 89.99720 * 23 21 19 25 25 H 1.48500 * 109.46958 * 209.99732 * 23 21 19 26 26 H 1.48497 * 109.46864 * 329.99786 * 23 21 19 27 27 C 1.53781 * 87.08352 * 334.56324 * 16 15 13 28 28 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46705 * 300.03025 * 1 2 3 30 30 H 1.09004 * 109.46593 * 60.02691 * 1 2 3 31 31 H 1.08997 * 109.47832 * 181.14188 * 5 4 2 32 32 H 1.09000 * 109.48236 * 301.17758 * 5 4 2 33 33 H 1.09004 * 109.52333 * 62.30039 * 6 5 4 34 34 H 1.09001 * 109.52152 * 182.41684 * 6 5 4 35 35 H 1.09005 * 109.54265 * 176.84854 * 7 6 5 36 36 H 1.08996 * 109.54473 * 297.02360 * 7 6 5 37 37 H 0.97001 * 120.00195 * 359.97438 * 12 10 8 38 38 H 1.08994 * 113.60877 * 254.52641 * 15 13 12 39 39 H 1.08998 * 113.61615 * 25.42643 * 15 13 12 40 40 H 0.96999 * 119.99569 * 24.99648 * 18 16 15 41 41 H 0.97003 * 119.99466 * 179.97438 * 22 21 19 42 42 H 1.08995 * 113.61479 * 270.88581 * 27 16 15 43 43 H 1.09006 * 113.61145 * 139.97848 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 8 2.0066 -0.6742 -1.1664 5 6 3.4308 -0.7094 -1.2790 6 6 4.0176 -1.4602 -0.0808 7 6 3.5711 -0.7710 1.2122 8 6 2.0405 -0.7224 1.2496 9 1 1.6442 -1.7375 1.2709 10 6 1.5902 0.0214 2.4805 11 8 0.9214 1.0271 2.3705 12 7 1.9309 -0.4310 3.7035 13 6 1.4927 0.2918 4.9001 14 1 0.6013 0.8949 4.7276 15 6 1.4053 -0.5916 6.1559 16 6 1.9950 0.5953 6.9359 17 1 1.2414 1.2817 7.3220 18 7 2.9782 0.2017 7.9483 19 6 3.2059 1.0081 9.0314 20 1 2.6610 1.9343 9.1391 21 6 4.1378 0.6355 9.9903 22 7 4.8022 -0.4931 9.8587 23 14 4.4490 1.7358 11.4674 24 1 3.5304 1.3552 12.5704 25 1 5.8553 1.5753 11.9167 26 1 4.2086 3.1516 11.0893 27 6 2.6255 1.0521 5.6098 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5143 0.8897 30 1 -0.3633 0.5134 -0.8903 31 1 3.7100 -1.2204 -2.2004 32 1 3.8194 0.3089 -1.2958 33 1 3.6613 -2.4903 -0.0864 34 1 5.1058 -1.4510 -0.1426 35 1 3.9391 -1.3328 2.0707 36 1 3.9703 0.2428 1.2416 37 1 2.4656 -1.2355 3.7914 38 1 0.3840 -0.8398 6.4447 39 1 2.0606 -1.4620 6.1239 40 1 3.4677 -0.6300 7.8513 41 1 5.4537 -0.7532 10.5287 42 1 3.6144 0.6311 5.4286 43 1 2.5892 2.1309 5.4579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022008885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:05 Heat of formation + Delta-G solvation = -86.150542 kcal Electronic energy + Delta-G solvation = -22481.754669 eV Core-core repulsion = 19140.351691 eV Total energy + Delta-G solvation = -3341.402977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64138 -40.19025 -39.00138 -35.82086 -34.98502 -33.96116 -33.56826 -31.78816 -28.99711 -26.62007 -26.46806 -25.78537 -24.08358 -23.04308 -21.93850 -21.18303 -20.62540 -19.17529 -18.32661 -17.69373 -17.12691 -16.56867 -16.27508 -16.14544 -16.02148 -15.76774 -15.43937 -14.93851 -14.81213 -14.45641 -13.98894 -13.67133 -13.43569 -13.31458 -13.25793 -13.15839 -12.99434 -12.80324 -12.39600 -12.24272 -12.17757 -12.07083 -11.98954 -11.91696 -11.73832 -11.50948 -11.34185 -10.87923 -10.71405 -10.39656 -9.96618 -8.99027 -7.95956 -5.23866 1.48076 1.48720 1.57260 1.57520 2.13620 2.56563 2.85911 3.35899 3.52554 3.65033 3.69221 3.74678 3.86633 3.95658 3.99548 4.12466 4.16156 4.28579 4.31443 4.37638 4.47612 4.58943 4.73127 4.77473 4.82094 4.87456 4.88472 4.90441 4.95280 5.05964 5.08426 5.13845 5.15096 5.28853 5.31422 5.43169 5.51487 5.68448 6.24031 6.26725 6.56585 7.23662 7.33401 8.08909 8.32396 9.27140 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033337 B = 0.003038 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.704915 B = 9213.919442 C = 9678.520926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.110 3.890 3 H 0.049 0.951 4 O -0.391 6.391 5 C 0.049 3.951 6 C -0.148 4.148 7 C -0.116 4.116 8 C -0.130 4.130 9 H 0.121 0.879 10 C 0.520 3.480 11 O -0.574 6.574 12 N -0.703 5.703 13 C 0.137 3.863 14 H 0.107 0.893 15 C -0.140 4.140 16 C 0.149 3.851 17 H 0.078 0.922 18 N -0.724 5.724 19 C -0.246 4.246 20 H 0.075 0.925 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.970 3.030 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.271 1.271 27 C -0.169 4.169 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.412 0.588 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.071 0.929 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.352 -3.947 -22.074 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.067 0.933 4 O -0.311 6.311 5 C -0.027 4.027 6 C -0.185 4.185 7 C -0.154 4.154 8 C -0.152 4.152 9 H 0.139 0.861 10 C 0.308 3.692 11 O -0.454 6.454 12 N -0.353 5.353 13 C 0.031 3.969 14 H 0.125 0.875 15 C -0.179 4.179 16 C 0.038 3.962 17 H 0.096 0.904 18 N -0.361 5.361 19 C -0.377 4.377 20 H 0.093 0.907 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.799 3.201 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.196 1.196 27 C -0.211 4.211 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.249 0.751 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.961 -3.171 -22.139 22.909 hybrid contribution 1.037 0.116 1.278 1.650 sum -3.924 -3.054 -20.862 21.446 Atomic orbital electron populations 1.21913 0.92567 1.02872 1.03301 1.21708 0.95659 0.94054 0.83419 0.93271 1.87939 1.22539 1.78046 1.42533 1.22831 0.79973 1.00235 0.99675 1.22172 1.02423 1.00490 0.93459 1.21642 0.91594 1.01927 1.00218 1.21987 0.98890 1.01889 0.92423 0.86147 1.20805 0.78647 0.84533 0.85231 1.90641 1.40534 1.27131 1.87098 1.45931 1.54539 1.29962 1.04868 1.22136 0.97665 0.94532 0.82586 0.87519 1.23666 1.02131 0.98091 0.94058 1.21681 0.91408 0.96066 0.87023 0.90423 1.42500 1.45676 1.24529 1.23428 1.19693 1.17035 1.01754 0.99266 0.90681 1.25523 0.99886 0.99101 1.02077 1.69798 1.29990 1.24710 1.37346 0.85188 0.76512 0.78643 0.79720 1.21360 1.22248 1.19635 1.24148 0.98687 0.99643 0.98610 0.91651 0.90335 0.91851 0.86876 0.93179 0.90006 0.88688 0.89438 0.92190 0.75133 0.89987 0.89413 0.79179 0.93987 0.91035 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.28 71.98 0.67 -2.49 16 2 C 0.11 2.32 2.40 30.63 0.07 2.39 16 3 H 0.05 1.19 8.04 -2.39 -0.02 1.17 16 4 O -0.39 -7.81 10.41 -148.98 -1.55 -9.36 16 5 C 0.05 0.69 6.84 72.01 0.49 1.18 16 6 C -0.15 -1.75 6.14 30.68 0.19 -1.56 16 7 C -0.12 -1.77 5.18 30.71 0.16 -1.61 16 8 C -0.13 -2.41 2.23 -11.45 -0.03 -2.44 16 9 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 10 C 0.52 12.67 6.88 87.66 0.60 13.28 16 11 O -0.57 -18.08 13.41 -3.03 -0.04 -18.12 16 12 N -0.70 -15.97 5.26 -440.03 -2.31 -18.29 16 13 C 0.14 3.76 4.24 45.52 0.19 3.96 16 14 H 0.11 3.11 7.46 -2.39 -0.02 3.09 16 15 C -0.14 -4.05 7.58 31.12 0.24 -3.81 16 16 C 0.15 5.60 4.48 45.52 0.20 5.80 16 17 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 18 N -0.72 -35.30 5.40 -320.43 -1.73 -37.03 16 19 C -0.25 -13.42 9.97 84.03 0.84 -12.59 16 20 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 21 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 22 N -0.97 -58.04 13.06 21.65 0.28 -57.76 16 23 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 C -0.17 -5.68 7.68 31.12 0.24 -5.44 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.95 5.73 -2.39 -0.01 1.93 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 1.14 7.67 -2.38 -0.02 1.13 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.41 7.40 8.21 -92.71 -0.76 6.64 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.09 2.48 8.09 -2.39 -0.02 2.46 16 40 H 0.38 19.42 7.92 -92.71 -0.73 18.68 16 41 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -66.63 343.75 0.52 -66.11 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.49 Total: 33.84 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 4.33 Total: -7.03 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -3.76 Total: -113.08 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -1.59 Total: -27.49 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -66.63 0.52 -66.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022008885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.041 kcal (2) G-P(sol) polarization free energy of solvation -66.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds