Wall clock time and date at job start Tue Mar 31 2020 05:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87328 * 2 1 4 4 O 1.43742 * 110.00309 * 238.91590 * 2 1 3 5 5 C 1.44389 * 106.97183 * 267.02025 * 4 2 1 6 6 C 1.54992 * 103.48955 * 319.93502 * 5 4 2 7 7 C 1.54099 * 109.88096 * 121.00644 * 2 1 3 8 8 C 1.52997 * 110.49010 * 236.35442 * 7 2 1 9 9 C 1.50705 * 110.48844 * 358.86697 * 7 2 1 10 10 O 1.21281 * 120.00071 * 111.88667 * 9 7 2 11 11 N 1.34773 * 119.99716 * 291.89746 * 9 7 2 12 12 C 1.46504 * 120.00113 * 185.06400 * 11 9 7 13 13 H 1.09004 * 112.84467 * 331.48113 * 12 11 9 14 14 C 1.53783 * 113.69109 * 102.74392 * 12 11 9 15 15 C 1.53783 * 87.07829 * 89.13139 * 14 12 11 16 16 H 1.08998 * 113.60893 * 139.98290 * 15 14 12 17 17 N 1.46502 * 113.61137 * 270.88295 * 15 14 12 18 18 C 1.36937 * 119.99315 * 186.45301 * 17 15 14 19 19 H 1.07995 * 120.00396 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99662 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00115 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00059 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46806 * 90.00515 * 22 20 18 24 24 H 1.48497 * 109.47184 * 209.99989 * 22 20 18 25 25 H 1.48490 * 109.47134 * 330.00108 * 22 20 18 26 26 C 1.53779 * 113.61885 * 200.28531 * 12 11 9 27 27 H 1.09008 * 109.47241 * 305.10747 * 1 2 3 28 28 H 1.09001 * 109.47029 * 65.10173 * 1 2 3 29 29 H 1.08992 * 109.47351 * 185.10809 * 1 2 3 30 30 H 1.08995 * 110.61818 * 78.43998 * 5 4 2 31 31 H 1.08997 * 110.61574 * 201.43742 * 5 4 2 32 32 H 1.08992 * 110.91002 * 278.82725 * 6 5 4 33 33 H 1.08997 * 110.90643 * 155.22186 * 6 5 4 34 34 H 1.09001 * 109.47459 * 181.84750 * 8 7 2 35 35 H 1.09005 * 109.47151 * 301.84202 * 8 7 2 36 36 H 1.09001 * 109.47507 * 61.84312 * 8 7 2 37 37 H 0.97005 * 120.00256 * 5.05790 * 11 9 7 38 38 H 1.09004 * 113.61543 * 203.68105 * 14 12 11 39 39 H 1.08999 * 113.61277 * 334.58034 * 14 12 11 40 40 H 0.96995 * 120.00253 * 6.45005 * 17 15 14 41 41 H 0.96998 * 120.00555 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.61282 * 25.34103 * 26 12 11 43 43 H 1.08995 * 113.61432 * 156.25074 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6974 -1.1568 5 6 2.2333 -2.0703 -0.7629 6 6 2.8357 -1.9494 0.6601 7 6 2.0540 -0.7465 1.2421 8 6 2.9829 0.1558 2.0569 9 6 0.9061 -1.2254 2.0930 10 8 0.6796 -2.4126 2.1934 11 7 0.1310 -0.3342 2.7423 12 6 -0.9141 -0.8014 3.6565 13 1 -1.3071 -1.7812 3.3847 14 6 -0.5352 -0.6801 5.1420 15 6 -1.1330 0.7361 5.0976 16 1 -1.7027 0.9976 5.9893 17 7 -0.1672 1.7690 4.7145 18 6 -0.5234 3.0904 4.7613 19 1 -1.5161 3.3711 5.0809 20 6 0.3918 4.0691 4.3989 21 7 1.6017 3.7270 4.0098 22 14 -0.0943 5.8717 4.4620 23 1 0.2229 6.4232 5.8038 24 1 0.6593 6.6241 3.4269 25 1 -1.5511 6.0008 4.2054 26 6 -2.0063 0.2460 3.9305 27 1 -0.3634 0.5911 0.8408 28 1 -0.3633 0.4327 -0.9322 29 1 -0.3633 -1.0235 0.0915 30 1 1.2877 -2.6116 -0.7347 31 1 2.9366 -2.5589 -1.4371 32 1 3.9031 -1.7338 0.6136 33 1 2.6476 -2.8529 1.2401 34 1 3.3693 -0.3984 2.9123 35 1 3.8131 0.4826 1.4308 36 1 2.4282 1.0259 2.4081 37 1 0.2653 0.6165 2.6045 38 1 -1.0826 -1.3650 5.7896 39 1 0.5399 -0.6948 5.3209 40 1 0.7244 1.5169 4.4278 41 1 2.2412 4.4109 3.7562 42 1 -2.1186 0.9789 3.1315 43 1 -2.9557 -0.1858 4.2469 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022480154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:53 Heat of formation + Delta-G solvation = -48.309881 kcal Electronic energy + Delta-G solvation = -24172.078362 eV Core-core repulsion = 20832.316279 eV Total energy + Delta-G solvation = -3339.762083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92299 -39.05518 -37.49429 -33.94544 -33.57444 -32.43942 -30.91996 -29.84994 -28.49652 -25.26406 -24.70919 -24.40515 -23.40867 -21.71396 -21.52464 -19.37599 -18.67688 -17.40774 -16.95681 -16.37728 -15.69806 -15.26359 -14.86178 -14.71683 -14.40529 -14.10782 -13.84648 -13.33765 -13.24666 -13.18150 -12.77504 -12.33991 -12.25966 -11.94967 -11.87868 -11.76768 -11.59206 -11.40934 -11.03763 -10.95892 -10.84550 -10.81446 -10.51077 -10.34516 -10.25135 -9.83609 -9.60020 -9.58344 -9.38603 -8.98982 -8.51212 -7.11078 -5.91640 -3.20889 2.87350 3.35826 3.42275 3.43131 3.47544 3.97984 4.43537 4.47733 4.73906 4.87267 5.05740 5.13095 5.17599 5.24894 5.30989 5.39955 5.41339 5.48434 5.62172 5.65980 5.72471 5.77746 5.86587 5.92739 5.97733 6.07257 6.10522 6.11359 6.17500 6.26695 6.32112 6.34819 6.50982 6.57858 6.62804 6.81428 6.91842 7.07820 7.62180 7.95027 8.27889 8.55211 9.39142 9.93514 10.29038 11.30444 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.006112 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.091529 B = 4579.756591 C = 5482.619264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.106 0.894 4 O -0.371 6.371 5 C 0.047 3.953 6 C -0.137 4.137 7 C -0.112 4.112 8 C -0.140 4.140 9 C 0.536 3.464 10 O -0.553 6.553 11 N -0.698 5.698 12 C 0.125 3.875 13 H 0.088 0.912 14 C -0.165 4.165 15 C 0.162 3.838 16 H 0.054 0.946 17 N -0.709 5.709 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.179 4.179 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.415 0.585 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.384 0.616 41 H 0.257 0.743 42 H 0.074 0.926 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 -9.553 -5.618 11.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.030 3.970 3 H 0.124 0.876 4 O -0.290 6.290 5 C -0.030 4.030 6 C -0.175 4.175 7 C -0.115 4.115 8 C -0.197 4.197 9 C 0.323 3.677 10 O -0.432 6.432 11 N -0.351 5.351 12 C 0.019 3.981 13 H 0.106 0.894 14 C -0.204 4.204 15 C 0.051 3.949 16 H 0.072 0.928 17 N -0.350 5.350 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.221 4.221 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.256 0.744 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.219 0.781 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.278 -10.085 -5.713 11.594 hybrid contribution 0.064 1.311 0.155 1.321 sum -0.214 -8.774 -5.558 10.389 Atomic orbital electron populations 1.22590 0.95366 1.02716 1.03512 1.22785 0.94115 0.96897 0.83234 0.87577 1.88889 1.85943 1.20957 1.33238 1.23533 0.99982 0.84353 0.95123 1.23142 0.99595 0.98332 0.96412 1.22236 0.95376 0.97693 0.96228 1.21884 0.98990 0.99494 0.99375 1.20062 0.82529 0.86105 0.79053 1.90619 1.71476 1.16617 1.64497 1.46077 1.34311 1.10823 1.43911 1.21722 0.89027 0.98088 0.89257 0.89440 1.23745 1.01656 0.98721 0.96311 1.21202 0.91368 0.87714 0.94605 0.92783 1.42248 1.12239 1.01515 1.79039 1.19235 0.97709 0.82530 1.37916 0.90971 1.24720 0.95925 0.97989 1.01886 1.69615 1.04740 1.32494 1.51031 0.86187 0.77533 0.85136 0.77281 1.21725 1.21744 1.20769 1.24078 0.96966 0.98395 1.02624 0.90169 0.91531 0.92327 0.92104 0.89070 0.89966 0.88565 0.91971 0.91396 0.89650 0.74443 0.89572 0.91385 0.78112 0.93345 0.90740 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 8.29 37.16 0.31 -2.39 16 2 C 0.09 1.29 3.75 -26.16 -0.10 1.19 16 3 H 0.11 1.54 7.69 -51.93 -0.40 1.14 16 4 O -0.37 -5.50 11.20 -35.23 -0.39 -5.90 16 5 C 0.05 0.59 7.67 38.21 0.29 0.89 16 6 C -0.14 -1.80 6.08 -24.72 -0.15 -1.95 16 7 C -0.11 -1.64 0.83 -154.13 -0.13 -1.77 16 8 C -0.14 -2.06 8.11 37.16 0.30 -1.76 16 9 C 0.54 8.96 4.65 -10.98 -0.05 8.91 16 10 O -0.55 -10.44 15.08 5.56 0.08 -10.36 16 11 N -0.70 -11.65 3.39 -53.01 -0.18 -11.83 16 12 C 0.12 2.03 4.29 -67.12 -0.29 1.74 16 13 H 0.09 1.42 7.53 -51.93 -0.39 1.03 16 14 C -0.16 -2.69 7.58 -25.92 -0.20 -2.88 16 15 C 0.16 3.01 4.53 -67.11 -0.30 2.71 16 16 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 17 N -0.71 -16.00 4.50 -52.63 -0.24 -16.24 16 18 C -0.24 -6.18 9.99 -15.06 -0.15 -6.33 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.93 -25.24 13.06 55.49 0.72 -24.51 16 22 Si 0.91 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.18 -2.91 7.61 -25.92 -0.20 -3.11 16 27 H 0.08 1.23 5.74 -51.92 -0.30 0.93 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.90 7.22 -51.93 -0.37 0.53 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 33 H 0.10 1.34 6.89 -51.93 -0.36 0.98 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.45 7.48 -51.93 -0.39 1.06 16 37 H 0.42 7.46 5.40 -40.82 -0.22 7.24 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.38 9.07 6.85 -40.82 -0.28 8.79 16 41 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -27.86 337.20 -7.59 -35.46 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -6.89 Total: 17.32 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -0.76 Total: -5.08 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.31 Total: -52.58 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.31 Total: -16.26 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.86 -7.59 -35.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022480154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.854 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds