Wall clock time and date at job start Tue Mar 31 2020 05:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 110.41732 * 2 1 4 4 O 1.44428 * 110.37018 * 237.68572 * 2 1 3 5 5 C 1.44425 * 105.27276 * 200.65684 * 4 2 1 6 6 C 1.54487 * 104.80327 * 40.51641 * 5 4 2 7 7 C 1.54480 * 110.37075 * 122.30786 * 2 1 3 8 8 C 1.53003 * 110.50987 * 24.02725 * 7 2 1 9 9 C 1.50700 * 110.50852 * 261.45790 * 7 2 1 10 10 O 1.21271 * 120.00257 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99808 * 179.97438 * 9 7 2 12 12 C 1.46500 * 120.00073 * 179.97438 * 11 9 7 13 13 H 1.09000 * 112.84990 * 315.07382 * 12 11 9 14 14 C 1.53774 * 113.61209 * 86.27052 * 12 11 9 15 15 C 1.53774 * 87.08346 * 89.11705 * 14 12 11 16 16 H 1.09003 * 113.61638 * 140.06534 * 15 14 12 17 17 N 1.46501 * 113.61380 * 270.88185 * 15 14 12 18 18 C 1.36936 * 120.00016 * 202.06458 * 17 15 14 19 19 H 1.08004 * 120.00220 * 0.27387 * 18 17 15 20 20 C 1.38808 * 120.00089 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99859 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47376 * 59.99601 * 22 20 18 24 24 H 1.48504 * 109.47120 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46848 * 299.99777 * 22 20 18 26 26 C 1.53779 * 113.61533 * 183.76801 * 12 11 9 27 27 H 1.08996 * 109.46932 * 297.69301 * 1 2 3 28 28 H 1.09001 * 109.46822 * 57.69352 * 1 2 3 29 29 H 1.09000 * 109.46635 * 177.68897 * 1 2 3 30 30 H 1.09003 * 110.37276 * 159.34516 * 5 4 2 31 31 H 1.08998 * 110.37697 * 281.68449 * 5 4 2 32 32 H 1.09003 * 110.50793 * 217.37623 * 6 5 4 33 33 H 1.08993 * 110.51225 * 94.66338 * 6 5 4 34 34 H 1.09005 * 109.47446 * 298.09223 * 8 7 2 35 35 H 1.08995 * 109.47517 * 58.09536 * 8 7 2 36 36 H 1.09001 * 109.47211 * 178.09664 * 8 7 2 37 37 H 0.97006 * 120.00025 * 0.02562 * 11 9 7 38 38 H 1.09003 * 113.61876 * 334.56609 * 14 12 11 39 39 H 1.09002 * 113.61200 * 203.66756 * 14 12 11 40 40 H 0.96999 * 120.00312 * 22.06644 * 17 15 14 41 41 H 0.97002 * 119.99947 * 180.02562 * 21 20 18 42 42 H 1.08994 * 113.61442 * 156.33738 * 26 12 11 43 43 H 1.08997 * 113.61451 * 25.43124 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7238 -1.1443 5 6 3.3874 -1.0872 -0.7994 6 6 3.3178 -1.5058 0.6860 7 6 2.0678 -0.7740 1.2240 8 6 1.0274 -1.7793 1.7220 9 6 2.4482 0.1802 2.3267 10 8 2.3105 1.3747 2.1692 11 7 2.9413 -0.2940 3.4879 12 6 3.3116 0.6336 4.5596 13 1 3.8795 1.4914 4.1996 14 6 2.1384 1.0132 5.4783 15 6 2.5149 -0.2084 6.3330 16 1 2.4391 -0.0309 7.4058 17 7 1.8519 -1.4454 5.9129 18 6 1.7142 -2.4826 6.7964 19 1 2.0905 -2.3870 7.8043 20 6 1.0865 -3.6548 6.3982 21 7 0.6240 -3.7696 5.1713 22 14 0.8980 -5.0694 7.6036 23 1 0.1059 -4.6186 8.7759 24 1 0.1990 -6.1976 6.9374 25 1 2.2400 -5.5167 8.0554 26 6 3.9421 -0.0563 5.7809 27 1 -0.3633 0.4776 0.9099 28 1 -0.3633 0.5492 -0.8686 29 1 -0.3632 -1.0269 -0.0414 30 1 3.7242 -1.9224 -1.4136 31 1 4.0526 -0.2325 -0.9220 32 1 4.2109 -1.1773 1.2176 33 1 3.1955 -2.5853 0.7733 34 1 0.1313 -1.2469 2.0409 35 1 0.7733 -2.4683 0.9166 36 1 1.4364 -2.3388 2.5633 37 1 3.0518 -1.2495 3.6137 38 1 1.1630 0.9271 4.9993 39 1 2.2762 1.9647 5.9919 40 1 1.5104 -1.5298 5.0090 41 1 0.1850 -4.5887 4.8931 42 1 4.5730 0.6028 6.3772 43 1 4.4229 -1.0058 5.5461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022480155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:55 Heat of formation + Delta-G solvation = -52.497235 kcal Electronic energy + Delta-G solvation = -23887.455973 eV Core-core repulsion = 20547.512312 eV Total energy + Delta-G solvation = -3339.943661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.72046 -39.12052 -37.48403 -33.89490 -33.61217 -32.43114 -31.34236 -29.86693 -27.60578 -25.46122 -25.18940 -24.45458 -23.08763 -22.19753 -21.12254 -19.13790 -18.72464 -17.38434 -17.04501 -15.97270 -15.59818 -15.34071 -15.05467 -14.86241 -14.57108 -14.13378 -13.94131 -13.65122 -13.18893 -13.03627 -12.49400 -12.37035 -12.15679 -11.99768 -11.78320 -11.62976 -11.46074 -11.37320 -11.16049 -10.92738 -10.84751 -10.64362 -10.56978 -10.37464 -10.26174 -9.84764 -9.68540 -9.59566 -9.28731 -9.00762 -8.54319 -7.09294 -5.89211 -3.17994 2.89944 3.37096 3.42104 3.42728 3.44701 3.93382 4.49177 4.55057 4.72330 4.86358 5.00885 5.10866 5.18913 5.23220 5.29774 5.40599 5.48259 5.51154 5.58790 5.63468 5.74202 5.79755 5.87228 5.90650 5.97094 6.05928 6.12590 6.19586 6.22060 6.25512 6.32024 6.37376 6.58483 6.64036 6.68045 6.79951 6.89872 7.07170 7.62376 7.89817 8.30567 8.54348 9.41724 9.97187 10.33119 11.32770 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.005697 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.440857 B = 4913.748182 C = 5856.081653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.085 0.915 4 O -0.372 6.372 5 C 0.048 3.952 6 C -0.145 4.145 7 C -0.110 4.110 8 C -0.136 4.136 9 C 0.531 3.469 10 O -0.549 6.549 11 N -0.697 5.697 12 C 0.126 3.874 13 H 0.079 0.921 14 C -0.167 4.167 15 C 0.164 3.836 16 H 0.063 0.937 17 N -0.706 5.706 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.179 4.179 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.410 0.590 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.385 0.615 41 H 0.257 0.743 42 H 0.082 0.918 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 5.723 -8.154 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.103 0.897 4 O -0.291 6.291 5 C -0.029 4.029 6 C -0.183 4.183 7 C -0.113 4.113 8 C -0.193 4.193 9 C 0.317 3.683 10 O -0.427 6.427 11 N -0.349 5.349 12 C 0.021 3.979 13 H 0.097 0.903 14 C -0.207 4.207 15 C 0.052 3.948 16 H 0.081 0.919 17 N -0.346 5.346 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.221 4.221 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.248 0.752 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.059 6.360 -8.308 11.622 hybrid contribution 0.019 -1.268 0.674 1.436 sum 5.078 5.092 -7.634 10.488 Atomic orbital electron populations 1.21861 0.92935 1.03068 1.02333 1.22918 0.95606 0.95590 0.82683 0.89717 1.89109 1.26819 1.74886 1.38269 1.23340 0.85040 0.99744 0.94789 1.23066 0.96979 1.01918 0.96326 1.22155 0.97675 0.96472 0.95046 1.21916 0.97751 0.97502 1.02145 1.20183 0.76408 0.88759 0.82956 1.90635 1.54440 1.16326 1.81346 1.45821 1.64191 1.11102 1.13777 1.21723 0.97147 0.92461 0.86543 0.90307 1.23832 0.98874 0.99325 0.98704 1.21181 0.90327 0.86835 0.96452 0.91889 1.42257 1.67316 1.11171 1.13865 1.19242 1.31800 0.92614 0.93976 0.91063 1.24723 1.00891 0.98223 0.96706 1.69611 1.44008 1.27521 1.16622 0.86252 0.77639 0.81964 0.80190 1.21287 1.21692 1.21293 1.24142 1.00951 1.00488 0.96507 0.90887 0.92206 0.91234 0.88971 0.92432 0.90326 0.89197 0.91591 0.91509 0.89862 0.75242 0.91366 0.89824 0.77938 0.93351 0.89933 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.38 37.16 0.31 -1.65 16 2 C 0.09 1.32 3.19 -25.95 -0.08 1.24 16 3 H 0.09 1.35 6.90 -51.93 -0.36 0.99 16 4 O -0.37 -5.38 11.34 -35.23 -0.40 -5.78 16 5 C 0.05 0.57 7.63 37.94 0.29 0.86 16 6 C -0.14 -1.82 6.37 -25.16 -0.16 -1.98 16 7 C -0.11 -1.63 0.81 -154.09 -0.12 -1.75 16 8 C -0.14 -2.12 6.99 37.16 0.26 -1.86 16 9 C 0.53 9.00 6.34 -10.98 -0.07 8.93 16 10 O -0.55 -10.64 15.37 5.56 0.09 -10.56 16 11 N -0.70 -11.60 4.25 -53.02 -0.23 -11.83 16 12 C 0.13 2.06 4.01 -67.12 -0.27 1.80 16 13 H 0.08 1.25 8.02 -51.93 -0.42 0.84 16 14 C -0.17 -2.87 7.61 -25.93 -0.20 -3.07 16 15 C 0.16 3.12 4.55 -67.12 -0.31 2.81 16 16 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 17 N -0.71 -16.37 5.00 -52.64 -0.26 -16.63 16 18 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 19 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -25.50 13.06 55.49 0.72 -24.78 16 22 Si 0.91 21.29 29.55 -169.99 -5.02 16.26 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 C -0.18 -2.87 7.57 -25.92 -0.20 -3.07 16 27 H 0.07 1.02 7.74 -51.93 -0.40 0.61 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.91 6.65 -51.93 -0.35 0.57 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.95 7.73 -51.93 -0.40 0.55 16 33 H 0.09 1.08 7.74 -51.93 -0.40 0.67 16 34 H 0.07 1.07 6.82 -51.93 -0.35 0.72 16 35 H 0.07 0.97 7.63 -51.93 -0.40 0.57 16 36 H 0.08 1.48 7.49 -51.93 -0.39 1.09 16 37 H 0.41 7.08 7.08 -40.82 -0.29 6.79 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.39 9.24 6.35 -40.82 -0.26 8.98 16 41 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -28.75 340.23 -7.71 -36.45 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -6.94 Total: 16.34 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -0.79 Total: -4.61 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.24 Total: -53.24 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.31 Total: -16.33 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.75 -7.71 -36.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022480155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.045 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds