Wall clock time and date at job start Tue Mar 31 2020 05:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 110.41732 * 2 1 4 4 O 1.44428 * 110.37018 * 237.68572 * 2 1 3 5 5 C 1.44425 * 105.27276 * 200.65684 * 4 2 1 6 6 C 1.54487 * 104.80327 * 40.51641 * 5 4 2 7 7 C 1.54480 * 110.37075 * 122.30786 * 2 1 3 8 8 C 1.53003 * 110.50987 * 24.02725 * 7 2 1 9 9 C 1.50700 * 110.50852 * 261.45790 * 7 2 1 10 10 O 1.21271 * 120.00257 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99808 * 179.97438 * 9 7 2 12 12 C 1.46500 * 120.00073 * 179.97438 * 11 9 7 13 13 H 1.09000 * 112.84990 * 315.07382 * 12 11 9 14 14 C 1.53774 * 113.61209 * 86.27052 * 12 11 9 15 15 C 1.53774 * 87.08346 * 89.11705 * 14 12 11 16 16 H 1.09003 * 113.61638 * 140.06534 * 15 14 12 17 17 N 1.46501 * 113.61380 * 270.88185 * 15 14 12 18 18 C 1.36936 * 120.00016 * 202.06458 * 17 15 14 19 19 H 1.08004 * 120.00220 * 0.27387 * 18 17 15 20 20 C 1.38808 * 120.00089 * 180.02562 * 18 17 15 21 21 N 1.31625 * 119.99859 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47376 * 59.99601 * 22 20 18 24 24 H 1.48504 * 109.47120 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46848 * 299.99777 * 22 20 18 26 26 C 1.53779 * 113.61533 * 183.76801 * 12 11 9 27 27 H 1.08996 * 109.46932 * 297.69301 * 1 2 3 28 28 H 1.09001 * 109.46822 * 57.69352 * 1 2 3 29 29 H 1.09000 * 109.46635 * 177.68897 * 1 2 3 30 30 H 1.09003 * 110.37276 * 159.34516 * 5 4 2 31 31 H 1.08998 * 110.37697 * 281.68449 * 5 4 2 32 32 H 1.09003 * 110.50793 * 217.37623 * 6 5 4 33 33 H 1.08993 * 110.51225 * 94.66338 * 6 5 4 34 34 H 1.09005 * 109.47446 * 298.09223 * 8 7 2 35 35 H 1.08995 * 109.47517 * 58.09536 * 8 7 2 36 36 H 1.09001 * 109.47211 * 178.09664 * 8 7 2 37 37 H 0.97006 * 120.00025 * 0.02562 * 11 9 7 38 38 H 1.09003 * 113.61876 * 334.56609 * 14 12 11 39 39 H 1.09002 * 113.61200 * 203.66756 * 14 12 11 40 40 H 0.96999 * 120.00312 * 22.06644 * 17 15 14 41 41 H 0.97002 * 119.99947 * 180.02562 * 21 20 18 42 42 H 1.08994 * 113.61442 * 156.33738 * 26 12 11 43 43 H 1.08997 * 113.61451 * 25.43124 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7238 -1.1443 5 6 3.3874 -1.0872 -0.7994 6 6 3.3178 -1.5058 0.6860 7 6 2.0678 -0.7740 1.2240 8 6 1.0274 -1.7793 1.7220 9 6 2.4482 0.1802 2.3267 10 8 2.3105 1.3747 2.1692 11 7 2.9413 -0.2940 3.4879 12 6 3.3116 0.6336 4.5596 13 1 3.8795 1.4914 4.1996 14 6 2.1384 1.0132 5.4783 15 6 2.5149 -0.2084 6.3330 16 1 2.4391 -0.0309 7.4058 17 7 1.8519 -1.4454 5.9129 18 6 1.7142 -2.4826 6.7964 19 1 2.0905 -2.3870 7.8043 20 6 1.0865 -3.6548 6.3982 21 7 0.6240 -3.7696 5.1713 22 14 0.8980 -5.0694 7.6036 23 1 0.1059 -4.6186 8.7759 24 1 0.1990 -6.1976 6.9374 25 1 2.2400 -5.5167 8.0554 26 6 3.9421 -0.0563 5.7809 27 1 -0.3633 0.4776 0.9099 28 1 -0.3633 0.5492 -0.8686 29 1 -0.3632 -1.0269 -0.0414 30 1 3.7242 -1.9224 -1.4136 31 1 4.0526 -0.2325 -0.9220 32 1 4.2109 -1.1773 1.2176 33 1 3.1955 -2.5853 0.7733 34 1 0.1313 -1.2469 2.0409 35 1 0.7733 -2.4683 0.9166 36 1 1.4364 -2.3388 2.5633 37 1 3.0518 -1.2495 3.6137 38 1 1.1630 0.9271 4.9993 39 1 2.2762 1.9647 5.9919 40 1 1.5104 -1.5298 5.0090 41 1 0.1850 -4.5887 4.8931 42 1 4.5730 0.6028 6.3772 43 1 4.4229 -1.0058 5.5461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022480155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:54 Heat of formation + Delta-G solvation = -70.928580 kcal Electronic energy + Delta-G solvation = -23888.255216 eV Core-core repulsion = 20547.512312 eV Total energy + Delta-G solvation = -3340.742904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97672 -40.42805 -38.85282 -35.47734 -35.08056 -33.83390 -32.46718 -31.67338 -28.76453 -26.77021 -26.53730 -26.13952 -24.58691 -23.28356 -22.46218 -20.50323 -20.09982 -19.19456 -18.30726 -17.32847 -16.75287 -16.65064 -16.47713 -16.27795 -16.05780 -15.41919 -15.27230 -15.18954 -14.80246 -14.48639 -13.66589 -13.58238 -13.49756 -13.31733 -13.14166 -13.10035 -12.76694 -12.74452 -12.58820 -12.52337 -12.21633 -12.17667 -11.88830 -11.81066 -11.69727 -11.63927 -11.08018 -10.87357 -10.85927 -10.57284 -9.93719 -8.96571 -7.89963 -5.17929 1.51536 1.52297 1.54964 1.58076 2.15124 2.58699 2.85190 3.41188 3.42581 3.60486 3.63198 3.71593 3.83156 3.91495 4.02756 4.15684 4.22624 4.28107 4.37954 4.40283 4.53037 4.62542 4.65010 4.77829 4.84430 4.87505 4.90262 4.98069 5.00352 5.01257 5.04834 5.08630 5.18286 5.24280 5.36353 5.37797 5.55573 5.71654 5.82332 6.32459 6.52840 7.18241 7.39448 8.13029 8.39085 9.31319 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.005697 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.440857 B = 4913.748182 C = 5856.081653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.092 3.908 3 H 0.072 0.928 4 O -0.382 6.382 5 C 0.046 3.954 6 C -0.142 4.142 7 C -0.107 4.107 8 C -0.124 4.124 9 C 0.530 3.470 10 O -0.575 6.575 11 N -0.696 5.696 12 C 0.125 3.875 13 H 0.091 0.909 14 C -0.159 4.159 15 C 0.145 3.855 16 H 0.064 0.936 17 N -0.718 5.718 18 C -0.247 4.247 19 H 0.074 0.926 20 C -0.063 4.063 21 N -0.953 5.953 22 Si 0.966 3.034 23 H -0.285 1.285 24 H -0.298 1.298 25 H -0.280 1.280 26 C -0.157 4.157 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.407 0.593 38 H 0.040 0.960 39 H 0.113 0.887 40 H 0.378 0.622 41 H 0.251 0.749 42 H 0.117 0.883 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.585 5.955 -8.136 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.034 3.966 3 H 0.090 0.910 4 O -0.301 6.301 5 C -0.031 4.031 6 C -0.180 4.180 7 C -0.111 4.111 8 C -0.181 4.181 9 C 0.317 3.683 10 O -0.455 6.455 11 N -0.346 5.346 12 C 0.020 3.980 13 H 0.109 0.891 14 C -0.199 4.199 15 C 0.035 3.965 16 H 0.082 0.918 17 N -0.358 5.358 18 C -0.379 4.379 19 H 0.092 0.908 20 C -0.256 4.256 21 N -0.603 5.603 22 Si 0.796 3.204 23 H -0.212 1.212 24 H -0.224 1.224 25 H -0.206 1.206 26 C -0.197 4.197 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.136 0.864 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.244 0.756 38 H 0.058 0.942 39 H 0.131 0.869 40 H 0.212 0.788 41 H 0.060 0.940 42 H 0.135 0.865 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.369 6.619 -8.265 12.357 hybrid contribution -0.360 -1.262 0.709 1.492 sum 6.008 5.357 -7.556 11.041 Atomic orbital electron populations 1.21838 0.92388 1.03358 1.02455 1.22826 0.96120 0.94903 0.82751 0.91029 1.89097 1.28182 1.74778 1.38073 1.23548 0.84036 1.01039 0.94457 1.23089 0.95930 1.02049 0.96912 1.22125 0.98498 0.96003 0.94465 1.21771 0.97314 0.97463 1.01577 1.20522 0.75782 0.88699 0.83317 1.90616 1.55603 1.17467 1.81855 1.45865 1.63887 1.10976 1.13900 1.21818 0.96805 0.92765 0.86597 0.89131 1.23815 0.97736 0.99818 0.98481 1.21465 0.92216 0.85971 0.96848 0.91787 1.42363 1.68116 1.12090 1.13236 1.19551 1.30684 0.93279 0.94392 0.90836 1.25383 1.01667 1.00404 0.98163 1.69747 1.45090 1.27589 1.17859 0.85340 0.77507 0.79264 0.78292 1.21208 1.22429 1.20643 1.23974 0.99104 1.00663 0.96005 0.91851 0.90906 0.90949 0.86425 0.91613 0.89763 0.88510 0.92885 0.90309 0.92204 0.75590 0.94154 0.86909 0.78763 0.94048 0.86463 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 8.38 71.99 0.60 -3.24 16 2 C 0.09 2.66 3.19 31.10 0.10 2.76 16 3 H 0.07 2.27 6.90 -2.39 -0.02 2.26 16 4 O -0.38 -10.49 11.34 -148.98 -1.69 -12.18 16 5 C 0.05 0.99 7.63 72.49 0.55 1.54 16 6 C -0.14 -3.39 6.37 31.61 0.20 -3.18 16 7 C -0.11 -3.15 0.81 -51.91 -0.04 -3.19 16 8 C -0.12 -3.93 6.99 71.98 0.50 -3.42 16 9 C 0.53 17.90 6.34 87.66 0.56 18.45 16 10 O -0.58 -22.22 15.37 -3.00 -0.05 -22.27 16 11 N -0.70 -22.92 4.25 -440.06 -1.87 -24.80 16 12 C 0.13 3.89 4.01 45.51 0.18 4.08 16 13 H 0.09 2.66 8.02 -2.39 -0.02 2.64 16 14 C -0.16 -5.25 7.61 31.12 0.24 -5.01 16 15 C 0.15 5.35 4.55 45.52 0.21 5.56 16 16 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 17 N -0.72 -33.34 5.00 -320.45 -1.60 -34.94 16 18 C -0.25 -12.81 9.98 84.03 0.84 -11.97 16 19 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 20 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 21 N -0.95 -53.04 13.06 21.65 0.28 -52.75 16 22 Si 0.97 43.83 29.55 68.60 2.03 45.85 16 23 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 26 C -0.16 -4.66 7.57 31.12 0.24 -4.43 16 27 H 0.06 1.80 7.74 -2.39 -0.02 1.78 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.87 6.65 -2.39 -0.02 1.86 16 30 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.91 7.73 -2.39 -0.02 1.89 16 33 H 0.10 2.18 7.74 -2.39 -0.02 2.16 16 34 H 0.05 1.78 6.82 -2.38 -0.02 1.77 16 35 H 0.08 2.26 7.63 -2.39 -0.02 2.25 16 36 H 0.06 2.19 7.49 -2.39 -0.02 2.17 16 37 H 0.41 14.09 7.08 -92.70 -0.66 13.44 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.38 18.46 6.35 -92.71 -0.59 17.88 16 41 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 42 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -60.98 340.23 1.51 -59.47 By element: Atomic # 1 Polarization: 46.79 SS G_CDS: -0.23 Total: 46.56 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 4.64 Total: -4.95 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -3.19 Total: -112.49 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -1.74 Total: -34.45 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -60.98 1.51 -59.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022480155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.457 kcal (2) G-P(sol) polarization free energy of solvation -60.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds