Wall clock time and date at job start Tue Mar 31 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 110.27588 * 2 1 4 4 C 1.54946 * 110.31418 * 122.08865 * 2 1 3 5 5 C 1.55305 * 100.94347 * 155.45777 * 4 2 1 6 6 C 1.54376 * 102.25320 * 325.87020 * 5 4 2 7 7 H 1.09005 * 109.83260 * 261.75036 * 6 5 4 8 8 C 1.53005 * 109.83219 * 140.86975 * 6 5 4 9 9 C 1.50693 * 109.47196 * 175.18752 * 8 6 5 10 10 O 1.21284 * 120.00124 * 359.97438 * 9 8 6 11 11 N 1.34783 * 120.00276 * 180.02562 * 9 8 6 12 12 C 1.46493 * 120.00436 * 179.97438 * 11 9 8 13 13 H 1.08999 * 112.84752 * 336.19386 * 12 11 9 14 14 C 1.53955 * 113.74369 * 107.40026 * 12 11 9 15 15 C 1.53790 * 87.01854 * 139.94446 * 14 12 11 16 16 H 1.09000 * 113.61139 * 89.23141 * 15 14 12 17 17 N 1.46499 * 113.61381 * 220.04853 * 15 14 12 18 18 C 1.36939 * 119.99933 * 254.41150 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31612 * 120.00054 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99751 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47517 * 89.99708 * 22 20 18 24 24 H 1.48502 * 109.46736 * 209.99481 * 22 20 18 25 25 H 1.48496 * 109.47375 * 329.99177 * 22 20 18 26 26 C 1.53778 * 113.61547 * 205.00228 * 12 11 9 27 27 O 1.43244 * 107.66558 * 21.30913 * 6 5 4 28 28 H 1.09008 * 109.46960 * 297.90890 * 1 2 3 29 29 H 1.09001 * 109.47321 * 57.90442 * 1 2 3 30 30 H 1.08993 * 109.47210 * 177.91293 * 1 2 3 31 31 H 1.09004 * 111.11847 * 37.54230 * 4 2 1 32 32 H 1.08999 * 111.12504 * 273.38033 * 4 2 1 33 33 H 1.08997 * 110.85112 * 207.68045 * 5 4 2 34 34 H 1.09001 * 111.02123 * 84.13916 * 5 4 2 35 35 H 1.09000 * 109.47168 * 55.18351 * 8 6 5 36 36 H 1.09004 * 109.46784 * 295.18453 * 8 6 5 37 37 H 0.97006 * 119.99356 * 359.97438 * 11 9 8 38 38 H 1.08994 * 113.61397 * 25.42396 * 14 12 11 39 39 H 1.09000 * 113.66822 * 254.46994 * 14 12 11 40 40 H 0.97001 * 119.99790 * 74.13124 * 17 15 14 41 41 H 0.96998 * 120.00381 * 180.02562 * 21 20 18 42 42 H 1.09000 * 113.62078 * 105.38312 * 26 12 11 43 43 H 1.09004 * 113.61222 * 334.47579 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0679 -0.7719 1.2311 5 6 3.4710 -1.1996 0.7209 6 6 3.2139 -1.4398 -0.7822 7 1 3.0683 -2.5042 -0.9670 8 6 4.4017 -0.9290 -1.6002 9 6 4.1964 -1.2730 -3.0529 10 8 3.1985 -1.8686 -3.3998 11 7 5.1222 -0.9197 -3.9665 12 6 4.9229 -1.2546 -5.3786 13 1 4.2550 -2.1040 -5.5220 14 6 4.5729 -0.0418 -6.2600 15 6 5.4952 -0.6533 -7.3280 16 1 4.9849 -1.3383 -8.0050 17 7 6.3154 0.3361 -8.0313 18 6 6.0066 0.6919 -9.3171 19 1 5.1610 0.2398 -9.8141 20 6 6.7802 1.6337 -9.9814 21 7 6.4837 1.9753 -11.2174 22 14 8.2429 2.4151 -9.1217 23 1 9.4591 1.6017 -9.3758 24 1 8.4485 3.7895 -9.6454 25 1 7.9841 2.4757 -7.6608 26 6 6.2326 -1.3592 -6.1778 27 8 2.0300 -0.7179 -1.1415 28 1 -0.3633 0.4811 0.9082 29 1 -0.3634 0.5460 -0.8706 30 1 -0.3633 -1.0269 -0.0374 31 1 1.4481 -1.6412 1.4511 32 1 2.1480 -0.1188 2.1000 33 1 3.7986 -2.1170 1.2099 34 1 4.1999 -0.4025 0.8673 35 1 5.3182 -1.3978 -1.2417 36 1 4.4800 0.1527 -1.4905 37 1 5.9205 -0.4437 -3.6889 38 1 4.9346 0.9062 -5.8617 39 1 3.5250 -0.0048 -6.5574 40 1 7.0747 0.7422 -7.5847 41 1 7.0245 2.6331 -11.6818 42 1 6.5225 -2.3842 -6.4089 43 1 7.0488 -0.7719 -5.7570 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022652774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:21 Heat of formation + Delta-G solvation = -58.696502 kcal Electronic energy + Delta-G solvation = -22000.761732 eV Core-core repulsion = 18660.549251 eV Total energy + Delta-G solvation = -3340.212481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29943 -39.37939 -37.88335 -34.12795 -33.12590 -32.60376 -32.44236 -30.51350 -29.33335 -25.36155 -25.20360 -24.14727 -22.09925 -21.73996 -20.96509 -20.22733 -19.41507 -17.51043 -17.29428 -16.88620 -16.27036 -16.00344 -14.93942 -14.81256 -14.61079 -14.34180 -14.08335 -13.65649 -13.40600 -13.12724 -12.95447 -12.69415 -12.33810 -12.29952 -12.03442 -12.01827 -11.85230 -11.74242 -11.39724 -11.19694 -11.06060 -11.01761 -10.76433 -10.46445 -10.26379 -10.08648 -9.71598 -9.63588 -9.51709 -8.93470 -8.73325 -7.27948 -5.78758 -3.14644 2.76831 3.26736 3.34759 3.37019 3.43155 3.55906 4.13769 4.39385 4.43141 4.56544 4.70798 4.82274 4.88855 4.95116 5.05816 5.09273 5.17358 5.19867 5.26308 5.28249 5.35536 5.38420 5.44018 5.47165 5.58578 5.64888 5.77469 5.78975 5.90414 5.93239 6.07023 6.12037 6.22410 6.44020 6.58634 6.70213 6.94152 6.99003 7.65826 7.97878 8.38177 8.40936 9.18188 9.90485 10.10122 11.39531 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030833 B = 0.002832 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.904103 B = 9884.012262 C = 9965.673544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.069 3.931 3 H 0.067 0.933 4 C -0.151 4.151 5 C -0.153 4.153 6 C 0.098 3.902 7 H 0.087 0.913 8 C -0.155 4.155 9 C 0.512 3.488 10 O -0.530 6.530 11 N -0.720 5.720 12 C 0.120 3.880 13 H 0.110 0.890 14 C -0.176 4.176 15 C 0.174 3.826 16 H 0.087 0.913 17 N -0.735 5.735 18 C -0.247 4.247 19 H 0.092 0.908 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.886 3.114 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.161 4.161 27 O -0.356 6.356 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.397 0.603 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.069 0.931 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 -6.180 28.324 29.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.189 4.189 5 C -0.191 4.191 6 C 0.040 3.960 7 H 0.104 0.896 8 C -0.195 4.195 9 C 0.298 3.702 10 O -0.406 6.406 11 N -0.371 5.371 12 C 0.015 3.985 13 H 0.128 0.872 14 C -0.218 4.218 15 C 0.062 3.938 16 H 0.105 0.895 17 N -0.375 5.375 18 C -0.377 4.377 19 H 0.110 0.890 20 C -0.192 4.192 21 N -0.580 5.580 22 Si 0.716 3.284 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.201 4.201 27 O -0.275 6.275 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.230 0.770 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.520 -6.585 27.583 28.891 hybrid contribution 1.677 1.075 0.872 2.174 sum -3.844 -5.511 28.456 29.238 Atomic orbital electron populations 1.21863 0.93776 1.02916 1.02234 1.23016 0.95071 0.95579 0.85179 0.91490 1.23313 0.96116 1.00976 0.98486 1.23200 0.97934 1.02771 0.95165 1.22418 0.84686 0.97005 0.91907 0.89551 1.22157 1.00205 1.03820 0.93335 1.20479 0.83088 0.78954 0.87667 1.90719 1.27877 1.40566 1.81460 1.46063 1.23587 1.59466 1.07946 1.22456 0.98542 0.99467 0.78074 0.87180 1.24314 1.01542 0.97575 0.98363 1.21346 0.91411 0.90951 0.90073 0.89475 1.42705 1.33192 1.47626 1.13984 1.19151 1.11711 1.19034 0.87835 0.89030 1.24698 0.99036 0.99407 0.96027 1.69699 1.41303 1.36047 1.10955 0.86536 0.83816 0.79105 0.78954 1.21053 1.21717 1.20425 1.23852 0.96589 1.01483 0.98149 1.88698 1.41444 1.64363 1.32991 0.91486 0.91776 0.91872 0.90235 0.90055 0.89881 0.90302 0.88140 0.88613 0.76953 0.90424 0.91831 0.80523 0.93016 0.91185 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.62 37.15 0.36 -0.87 16 2 C 0.07 0.62 4.07 -25.71 -0.10 0.52 16 3 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 4 C -0.15 -0.98 6.57 -24.48 -0.16 -1.14 16 5 C -0.15 -0.98 6.55 -24.79 -0.16 -1.14 16 6 C 0.10 0.97 3.04 -26.01 -0.08 0.90 16 7 H 0.09 0.95 7.94 -51.93 -0.41 0.54 16 8 C -0.15 -1.42 5.27 -27.88 -0.15 -1.56 16 9 C 0.51 6.91 7.73 -10.99 -0.08 6.82 16 10 O -0.53 -9.46 15.09 -6.68 -0.10 -9.56 16 11 N -0.72 -9.01 5.36 -52.93 -0.28 -9.30 16 12 C 0.12 1.77 4.24 -67.03 -0.28 1.49 16 13 H 0.11 1.75 7.46 -51.93 -0.39 1.36 16 14 C -0.18 -3.07 7.70 -25.82 -0.20 -3.27 16 15 C 0.17 3.31 4.47 -67.11 -0.30 3.01 16 16 H 0.09 1.69 8.11 -51.93 -0.42 1.27 16 17 N -0.74 -17.23 5.21 -52.63 -0.27 -17.50 16 18 C -0.25 -6.98 10.45 -15.06 -0.16 -7.14 16 19 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 22 Si 0.89 21.92 27.74 -169.99 -4.71 17.21 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 C -0.16 -2.40 7.58 -25.92 -0.20 -2.59 16 27 O -0.36 -4.54 10.07 -47.47 -0.48 -5.01 16 28 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.42 7.85 -51.93 -0.41 0.01 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.40 3.89 8.73 -40.82 -0.36 3.54 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.36 8.23 5.77 -40.82 -0.24 7.99 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -34.82 348.89 -8.73 -43.55 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.30 Total: 8.90 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.61 Total: -4.96 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.22 Total: -55.38 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.58 Total: -14.58 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.82 -8.73 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022652774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.146 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds