Wall clock time and date at job start Tue Mar 31 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 110.27588 * 2 1 4 4 C 1.54946 * 110.31418 * 122.08865 * 2 1 3 5 5 C 1.55305 * 100.94347 * 155.45777 * 4 2 1 6 6 C 1.54376 * 102.25320 * 325.87020 * 5 4 2 7 7 H 1.09005 * 109.83260 * 261.75036 * 6 5 4 8 8 C 1.53005 * 109.83219 * 140.86975 * 6 5 4 9 9 C 1.50693 * 109.47196 * 175.18752 * 8 6 5 10 10 O 1.21284 * 120.00124 * 359.97438 * 9 8 6 11 11 N 1.34783 * 120.00276 * 180.02562 * 9 8 6 12 12 C 1.46493 * 120.00436 * 179.97438 * 11 9 8 13 13 H 1.08999 * 112.84752 * 336.19386 * 12 11 9 14 14 C 1.53955 * 113.74369 * 107.40026 * 12 11 9 15 15 C 1.53790 * 87.01854 * 139.94446 * 14 12 11 16 16 H 1.09000 * 113.61139 * 89.23141 * 15 14 12 17 17 N 1.46499 * 113.61381 * 220.04853 * 15 14 12 18 18 C 1.36939 * 119.99933 * 254.41150 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31612 * 120.00054 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99751 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47517 * 89.99708 * 22 20 18 24 24 H 1.48502 * 109.46736 * 209.99481 * 22 20 18 25 25 H 1.48496 * 109.47375 * 329.99177 * 22 20 18 26 26 C 1.53778 * 113.61547 * 205.00228 * 12 11 9 27 27 O 1.43244 * 107.66558 * 21.30913 * 6 5 4 28 28 H 1.09008 * 109.46960 * 297.90890 * 1 2 3 29 29 H 1.09001 * 109.47321 * 57.90442 * 1 2 3 30 30 H 1.08993 * 109.47210 * 177.91293 * 1 2 3 31 31 H 1.09004 * 111.11847 * 37.54230 * 4 2 1 32 32 H 1.08999 * 111.12504 * 273.38033 * 4 2 1 33 33 H 1.08997 * 110.85112 * 207.68045 * 5 4 2 34 34 H 1.09001 * 111.02123 * 84.13916 * 5 4 2 35 35 H 1.09000 * 109.47168 * 55.18351 * 8 6 5 36 36 H 1.09004 * 109.46784 * 295.18453 * 8 6 5 37 37 H 0.97006 * 119.99356 * 359.97438 * 11 9 8 38 38 H 1.08994 * 113.61397 * 25.42396 * 14 12 11 39 39 H 1.09000 * 113.66822 * 254.46994 * 14 12 11 40 40 H 0.97001 * 119.99790 * 74.13124 * 17 15 14 41 41 H 0.96998 * 120.00381 * 180.02562 * 21 20 18 42 42 H 1.09000 * 113.62078 * 105.38312 * 26 12 11 43 43 H 1.09004 * 113.61222 * 334.47579 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0679 -0.7719 1.2311 5 6 3.4710 -1.1996 0.7209 6 6 3.2139 -1.4398 -0.7822 7 1 3.0683 -2.5042 -0.9670 8 6 4.4017 -0.9290 -1.6002 9 6 4.1964 -1.2730 -3.0529 10 8 3.1985 -1.8686 -3.3998 11 7 5.1222 -0.9197 -3.9665 12 6 4.9229 -1.2546 -5.3786 13 1 4.2550 -2.1040 -5.5220 14 6 4.5729 -0.0418 -6.2600 15 6 5.4952 -0.6533 -7.3280 16 1 4.9849 -1.3383 -8.0050 17 7 6.3154 0.3361 -8.0313 18 6 6.0066 0.6919 -9.3171 19 1 5.1610 0.2398 -9.8141 20 6 6.7802 1.6337 -9.9814 21 7 6.4837 1.9753 -11.2174 22 14 8.2429 2.4151 -9.1217 23 1 9.4591 1.6017 -9.3758 24 1 8.4485 3.7895 -9.6454 25 1 7.9841 2.4757 -7.6608 26 6 6.2326 -1.3592 -6.1778 27 8 2.0300 -0.7179 -1.1415 28 1 -0.3633 0.4811 0.9082 29 1 -0.3634 0.5460 -0.8706 30 1 -0.3633 -1.0269 -0.0374 31 1 1.4481 -1.6412 1.4511 32 1 2.1480 -0.1188 2.1000 33 1 3.7986 -2.1170 1.2099 34 1 4.1999 -0.4025 0.8673 35 1 5.3182 -1.3978 -1.2417 36 1 4.4800 0.1527 -1.4905 37 1 5.9205 -0.4437 -3.6889 38 1 4.9346 0.9062 -5.8617 39 1 3.5250 -0.0048 -6.5574 40 1 7.0747 0.7422 -7.5847 41 1 7.0245 2.6331 -11.6818 42 1 6.5225 -2.3842 -6.4089 43 1 7.0488 -0.7719 -5.7570 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022652774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:20 Heat of formation + Delta-G solvation = -83.715390 kcal Electronic energy + Delta-G solvation = -22001.846632 eV Core-core repulsion = 18660.549251 eV Total energy + Delta-G solvation = -3341.297381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25010 -40.36575 -39.15769 -35.84282 -34.30528 -33.67108 -33.14739 -32.41160 -30.08977 -26.62945 -26.52971 -25.47390 -23.52134 -22.35116 -21.91413 -21.32634 -20.81718 -19.45454 -18.04649 -17.87040 -17.53891 -16.79552 -16.43523 -16.04364 -15.79913 -15.64543 -15.08959 -14.72158 -14.67017 -14.30618 -14.08587 -13.79830 -13.61377 -13.47789 -13.33641 -12.93195 -12.90516 -12.67665 -12.53846 -12.31922 -12.14806 -12.02341 -11.90405 -11.72591 -11.71976 -11.64441 -11.61720 -10.94054 -10.70518 -10.43249 -9.94567 -9.28835 -8.02743 -5.37034 1.37613 1.43189 1.50155 1.74100 2.27945 2.48977 2.91167 3.26770 3.58095 3.61462 3.70993 3.78776 3.82285 3.88002 3.94124 4.11153 4.20266 4.24785 4.28172 4.43362 4.52114 4.62490 4.63536 4.76229 4.83045 4.84021 4.88305 4.90432 4.93215 5.08318 5.10958 5.12526 5.14249 5.27094 5.34372 5.36403 5.67520 5.76704 6.21771 6.27879 6.67624 7.07033 7.38605 7.82305 8.03432 9.18970 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030833 B = 0.002832 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.904103 B = 9884.012262 C = 9965.673544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 H 0.072 0.928 4 C -0.145 4.145 5 C -0.142 4.142 6 C 0.088 3.912 7 H 0.064 0.936 8 C -0.145 4.145 9 C 0.506 3.494 10 O -0.582 6.582 11 N -0.709 5.709 12 C 0.135 3.865 13 H 0.098 0.902 14 C -0.173 4.173 15 C 0.152 3.848 16 H 0.073 0.927 17 N -0.737 5.737 18 C -0.238 4.238 19 H 0.052 0.948 20 C -0.069 4.069 21 N -0.986 5.986 22 Si 0.962 3.038 23 H -0.275 1.275 24 H -0.298 1.298 25 H -0.247 1.247 26 C -0.135 4.135 27 O -0.398 6.398 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.415 0.585 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.369 0.631 41 H 0.258 0.742 42 H 0.087 0.913 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 -5.918 32.350 32.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.000 4.000 3 H 0.090 0.910 4 C -0.183 4.183 5 C -0.180 4.180 6 C 0.029 3.971 7 H 0.082 0.918 8 C -0.184 4.184 9 C 0.294 3.706 10 O -0.461 6.461 11 N -0.360 5.360 12 C 0.028 3.972 13 H 0.116 0.884 14 C -0.215 4.215 15 C 0.042 3.958 16 H 0.091 0.909 17 N -0.379 5.379 18 C -0.369 4.369 19 H 0.071 0.929 20 C -0.260 4.260 21 N -0.636 5.636 22 Si 0.789 3.211 23 H -0.201 1.201 24 H -0.225 1.225 25 H -0.171 1.171 26 C -0.174 4.174 27 O -0.318 6.318 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.157 0.843 36 H 0.130 0.870 37 H 0.252 0.748 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.203 0.797 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.168 -6.348 31.690 32.475 hybrid contribution 0.788 0.928 -0.421 1.288 sum -2.380 -5.420 31.270 31.825 Atomic orbital electron populations 1.21888 0.93838 1.02342 1.02704 1.23246 0.95238 0.95935 0.85539 0.90992 1.23303 0.96009 1.00953 0.98008 1.23188 0.98228 1.04269 0.92272 1.22558 0.84265 0.95694 0.94534 0.91783 1.22212 1.01463 1.05067 0.89694 1.21339 0.82077 0.77704 0.89480 1.90706 1.29995 1.42880 1.82506 1.45922 1.24228 1.59254 1.06643 1.22061 0.98200 0.97428 0.79472 0.88410 1.24212 0.99984 0.98778 0.98561 1.21629 0.92517 0.90735 0.90901 0.90928 1.42621 1.34056 1.48705 1.12470 1.19097 1.10068 1.18069 0.89651 0.92945 1.25614 1.02904 1.00573 0.96879 1.69903 1.43227 1.37333 1.13182 0.85310 0.79366 0.77233 0.79233 1.20103 1.22508 1.17135 1.23650 0.96569 1.02114 0.95060 1.88666 1.42861 1.65003 1.35280 0.89019 0.93454 0.92777 0.90479 0.87721 0.88250 0.88330 0.84314 0.86978 0.74840 0.90307 0.93715 0.79672 0.93325 0.89487 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.62 71.98 0.69 -1.70 16 2 C 0.06 0.96 4.07 31.26 0.13 1.09 16 3 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 4 C -0.15 -1.51 6.57 32.05 0.21 -1.30 16 5 C -0.14 -1.34 6.55 31.85 0.21 -1.13 16 6 C 0.09 1.60 3.04 31.06 0.09 1.69 16 7 H 0.06 1.40 7.94 -2.38 -0.02 1.38 16 8 C -0.14 -2.21 5.27 29.85 0.16 -2.05 16 9 C 0.51 12.82 7.73 87.65 0.68 13.50 16 10 O -0.58 -20.91 15.09 8.66 0.13 -20.78 16 11 N -0.71 -15.88 5.36 -439.77 -2.36 -18.24 16 12 C 0.13 3.79 4.24 45.58 0.19 3.98 16 13 H 0.10 3.08 7.46 -2.39 -0.02 3.06 16 14 C -0.17 -5.99 7.70 31.18 0.24 -5.75 16 15 C 0.15 5.71 4.47 45.52 0.20 5.91 16 16 H 0.07 2.91 8.11 -2.39 -0.02 2.89 16 17 N -0.74 -33.88 5.21 -320.43 -1.67 -35.55 16 18 C -0.24 -13.70 10.45 84.03 0.88 -12.82 16 19 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 20 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 21 N -0.99 -63.96 13.97 21.65 0.30 -63.65 16 22 Si 0.96 44.81 27.74 68.60 1.90 46.72 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.25 -10.12 6.52 99.48 0.65 -9.47 16 26 C -0.13 -3.63 7.58 31.12 0.24 -3.39 16 27 O -0.40 -10.05 10.07 -137.28 -1.38 -11.43 16 28 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.83 8.06 -2.38 -0.02 0.81 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.10 0.57 7.85 -2.39 -0.02 0.55 16 35 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.41 6.42 8.73 -92.70 -0.81 5.61 16 38 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.37 15.77 5.77 -92.71 -0.53 15.23 16 41 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 42 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.10 2.35 8.09 -2.38 -0.02 2.33 16 Total: -1.00 -79.88 348.89 0.91 -78.97 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -0.40 Total: 29.53 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.39 Total: -5.57 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -3.73 Total: -117.44 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.25 Total: -32.21 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.72 kcal Total: -79.88 0.91 -78.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022652774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.747 kcal (2) G-P(sol) polarization free energy of solvation -79.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds