Wall clock time and date at job start Tue Mar 31 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.87002 * 2 1 4 4 C 1.54106 * 109.87640 * 238.99682 * 2 1 3 5 5 C 1.54807 * 104.18688 * 238.39367 * 4 2 1 6 6 C 1.54994 * 102.09494 * 339.12124 * 5 4 2 7 7 H 1.09005 * 110.75004 * 278.45899 * 6 5 4 8 8 C 1.52994 * 110.62185 * 155.52387 * 6 5 4 9 9 C 1.50700 * 109.47587 * 179.47299 * 8 6 5 10 10 O 1.21283 * 119.99399 * 0.02562 * 9 8 6 11 11 N 1.34768 * 120.00181 * 179.97438 * 9 8 6 12 12 C 1.46508 * 119.99779 * 180.02562 * 11 9 8 13 13 H 1.08995 * 112.84840 * 23.80317 * 12 11 9 14 14 C 1.53783 * 113.61102 * 155.00258 * 12 11 9 15 15 C 1.53787 * 87.08006 * 139.97943 * 14 12 11 16 16 H 1.09003 * 113.61079 * 89.11501 * 15 14 12 17 17 N 1.46490 * 113.61523 * 219.93128 * 15 14 12 18 18 C 1.36939 * 120.00432 * 205.00173 * 17 15 14 19 19 H 1.08006 * 119.99417 * 359.97438 * 18 17 15 20 20 C 1.38804 * 120.00342 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00337 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99908 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47090 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46756 * 120.00000 * 22 20 18 25 25 H 1.48500 * 109.47261 * 239.99609 * 22 20 18 26 26 C 1.53782 * 113.61245 * 252.49987 * 12 11 9 27 27 O 1.43739 * 110.00806 * 121.08987 * 2 1 3 28 28 H 1.09001 * 109.47200 * 181.00760 * 1 2 3 29 29 H 1.09006 * 109.46698 * 301.00501 * 1 2 3 30 30 H 1.08998 * 109.47583 * 60.99920 * 1 2 3 31 31 H 1.08997 * 110.48714 * 357.07028 * 4 2 1 32 32 H 1.09000 * 110.48945 * 119.71900 * 4 2 1 33 33 H 1.09005 * 110.90346 * 97.31858 * 5 4 2 34 34 H 1.09000 * 110.90998 * 220.91594 * 5 4 2 35 35 H 1.08999 * 109.47216 * 299.47814 * 8 6 5 36 36 H 1.09001 * 109.47500 * 59.47298 * 8 6 5 37 37 H 0.96997 * 120.00769 * 0.02562 * 11 9 8 38 38 H 1.09004 * 113.61276 * 254.52316 * 14 12 11 39 39 H 1.08994 * 113.61888 * 25.43307 * 14 12 11 40 40 H 0.96998 * 120.00200 * 25.00210 * 17 15 14 41 41 H 0.96993 * 120.00262 * 180.02562 * 21 20 18 42 42 H 1.09004 * 113.61319 * 334.56222 * 26 12 11 43 43 H 1.08995 * 113.61287 * 105.47369 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0540 -0.7465 -1.2422 5 6 2.9227 -1.8882 -0.6604 6 6 3.2418 -1.3610 0.7617 7 1 4.0714 -0.6544 0.7345 8 6 3.5550 -2.5210 1.7087 9 6 3.8737 -1.9795 3.0785 10 8 3.8518 -0.7833 3.2777 11 7 4.1818 -2.8243 4.0822 12 6 4.4910 -2.2977 5.4140 13 1 4.0576 -1.3135 5.5910 14 6 4.2268 -3.3006 6.5495 15 6 5.5245 -2.7892 7.1971 16 1 5.3748 -1.9388 7.8623 17 7 6.3356 -3.8486 7.8018 18 6 7.2028 -3.5510 8.8190 19 1 7.2889 -2.5349 9.1751 20 6 7.9717 -4.5547 9.3916 21 7 7.8671 -5.7927 8.9573 22 14 9.1551 -4.1484 10.7788 23 1 9.0847 -2.6960 11.0800 24 1 8.7830 -4.9232 11.9898 25 1 10.5379 -4.5032 10.3697 26 6 5.9809 -2.3924 5.7831 27 8 2.0218 -0.6974 1.1566 28 1 -0.3634 -1.0275 0.0181 29 1 -0.3633 0.5294 0.8809 30 1 -0.3634 0.4982 -0.8988 31 1 1.2247 -1.1546 -1.8200 32 1 2.6597 -0.0826 -1.8590 33 1 2.3590 -2.8200 -0.6125 34 1 3.8358 -2.0170 -1.2416 35 1 2.6909 -3.1824 1.7715 36 1 4.4120 -3.0781 1.3300 37 1 4.1990 -3.7810 3.9231 38 1 3.3317 -3.0771 7.1299 39 1 4.2780 -4.3423 6.2328 40 1 6.2585 -4.7610 7.4817 41 1 8.4042 -6.4942 9.3577 42 1 6.5116 -3.1859 5.2569 43 1 6.5018 -1.4357 5.7449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022652775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:23 Heat of formation + Delta-G solvation = -63.132065 kcal Electronic energy + Delta-G solvation = -21856.986825 eV Core-core repulsion = 18516.582003 eV Total energy + Delta-G solvation = -3340.404821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.20772 -39.32452 -37.79187 -34.01878 -33.11553 -32.59904 -32.38705 -30.02260 -29.20804 -25.22635 -25.08304 -24.17995 -22.42858 -21.41373 -21.13455 -20.23006 -19.19412 -17.28000 -17.07225 -16.50167 -16.18174 -16.08258 -15.20634 -14.79407 -14.52575 -14.34830 -13.95330 -13.59471 -13.30611 -13.02951 -12.92386 -12.60117 -12.42282 -12.34315 -11.92960 -11.88445 -11.81659 -11.39398 -11.23326 -11.06231 -10.95246 -10.92288 -10.60010 -10.46088 -10.28434 -10.01288 -9.77137 -9.69118 -9.48047 -8.90154 -8.66295 -6.97706 -5.80082 -3.08702 2.81307 3.33732 3.42357 3.48651 3.50599 3.58374 4.24526 4.39285 4.58562 4.62511 4.69841 4.79308 4.94406 5.07554 5.09679 5.16644 5.19133 5.28474 5.30085 5.40319 5.43887 5.45590 5.49302 5.53765 5.67083 5.78371 5.85105 5.89056 5.91680 5.98764 6.17416 6.28443 6.34176 6.57550 6.63886 6.80795 6.83520 7.10161 7.69840 7.73077 8.38565 8.43183 9.49988 10.06976 10.41583 11.42474 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.051962 B = 0.002497 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.723306 B =11210.006639 C =11350.480335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 H 0.066 0.934 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.095 3.905 7 H 0.077 0.923 8 C -0.138 4.138 9 C 0.511 3.489 10 O -0.534 6.534 11 N -0.718 5.718 12 C 0.118 3.882 13 H 0.108 0.892 14 C -0.159 4.159 15 C 0.168 3.832 16 H 0.079 0.921 17 N -0.711 5.711 18 C -0.242 4.242 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.176 4.176 27 O -0.356 6.356 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.398 0.602 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.079 0.921 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.091 6.546 -21.681 26.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.011 3.989 3 H 0.084 0.916 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.037 3.963 7 H 0.095 0.905 8 C -0.178 4.178 9 C 0.297 3.703 10 O -0.410 6.410 11 N -0.368 5.368 12 C 0.014 3.986 13 H 0.126 0.874 14 C -0.199 4.199 15 C 0.056 3.944 16 H 0.097 0.903 17 N -0.348 5.348 18 C -0.373 4.373 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.218 4.218 27 O -0.275 6.275 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.232 0.768 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.091 7.479 -21.146 25.970 hybrid contribution 0.811 -0.707 0.283 1.113 sum -12.280 6.772 -20.863 25.138 Atomic orbital electron populations 1.21917 0.93918 1.02639 1.02232 1.22694 0.95011 0.95991 0.85161 0.91644 1.23012 1.00122 0.97683 0.98172 1.23198 1.00553 0.99064 0.96180 1.22793 0.89037 0.92968 0.91514 0.90516 1.21770 1.03992 0.98818 0.93234 1.20466 0.76493 0.87026 0.86289 1.90710 1.51385 1.15392 1.83538 1.46065 1.70468 1.09850 1.10442 1.22455 0.97430 0.98585 0.80176 0.87416 1.23857 1.00351 0.99022 0.96639 1.21357 0.89409 0.92651 0.91027 0.90273 1.42363 1.45741 1.06195 1.40551 1.19370 1.14444 0.94136 1.09375 0.90935 1.24766 1.00571 0.95439 1.00216 1.69664 1.44044 0.99785 1.44671 0.86105 0.80742 0.77458 0.81826 1.20474 1.21846 1.21856 1.24319 0.94737 1.01499 1.01258 1.89005 1.38749 1.67480 1.32289 0.92037 0.91894 0.91520 0.90396 0.90749 0.90318 0.90078 0.88223 0.87606 0.76794 0.91577 0.90024 0.78119 0.93523 0.90282 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.37 37.16 0.35 -0.82 16 2 C 0.07 0.65 4.05 -26.15 -0.11 0.54 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.15 -1.05 6.64 -25.20 -0.17 -1.22 16 5 C -0.15 -1.08 6.59 -24.73 -0.16 -1.24 16 6 C 0.09 0.98 2.80 -25.68 -0.07 0.91 16 7 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 8 C -0.14 -1.33 5.48 -27.89 -0.15 -1.48 16 9 C 0.51 7.14 7.74 -10.99 -0.09 7.05 16 10 O -0.53 -9.72 15.16 -5.83 -0.09 -9.81 16 11 N -0.72 -9.46 5.35 -53.01 -0.28 -9.74 16 12 C 0.12 1.85 4.24 -67.11 -0.28 1.56 16 13 H 0.11 1.80 7.46 -51.93 -0.39 1.41 16 14 C -0.16 -2.56 7.58 -25.91 -0.20 -2.76 16 15 C 0.17 3.33 4.48 -67.12 -0.30 3.03 16 16 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 17 N -0.71 -17.66 5.40 -52.64 -0.28 -17.94 16 18 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 19 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 22 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 C -0.18 -3.14 7.68 -25.92 -0.20 -3.34 16 27 O -0.36 -4.55 10.29 -46.62 -0.48 -5.03 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.45 7.70 -51.93 -0.40 0.05 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.50 8.06 -51.93 -0.42 0.08 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.40 4.21 8.73 -40.82 -0.36 3.86 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 40 H 0.38 10.04 7.92 -40.82 -0.32 9.72 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -33.51 352.04 -9.09 -42.61 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.34 Total: 9.65 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.62 Total: -5.13 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.16 Total: -54.94 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.57 Total: -14.84 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.51 -9.09 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022652775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.523 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds