Wall clock time and date at job start Tue Mar 31 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.87002 * 2 1 4 4 C 1.54106 * 109.87640 * 238.99682 * 2 1 3 5 5 C 1.54807 * 104.18688 * 238.39367 * 4 2 1 6 6 C 1.54994 * 102.09494 * 339.12124 * 5 4 2 7 7 H 1.09005 * 110.75004 * 278.45899 * 6 5 4 8 8 C 1.52994 * 110.62185 * 155.52387 * 6 5 4 9 9 C 1.50700 * 109.47587 * 179.47299 * 8 6 5 10 10 O 1.21283 * 119.99399 * 0.02562 * 9 8 6 11 11 N 1.34768 * 120.00181 * 179.97438 * 9 8 6 12 12 C 1.46508 * 119.99779 * 180.02562 * 11 9 8 13 13 H 1.08995 * 112.84840 * 23.80317 * 12 11 9 14 14 C 1.53783 * 113.61102 * 155.00258 * 12 11 9 15 15 C 1.53787 * 87.08006 * 139.97943 * 14 12 11 16 16 H 1.09003 * 113.61079 * 89.11501 * 15 14 12 17 17 N 1.46490 * 113.61523 * 219.93128 * 15 14 12 18 18 C 1.36939 * 120.00432 * 205.00173 * 17 15 14 19 19 H 1.08006 * 119.99417 * 359.97438 * 18 17 15 20 20 C 1.38804 * 120.00342 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00337 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99908 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47090 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46756 * 120.00000 * 22 20 18 25 25 H 1.48500 * 109.47261 * 239.99609 * 22 20 18 26 26 C 1.53782 * 113.61245 * 252.49987 * 12 11 9 27 27 O 1.43739 * 110.00806 * 121.08987 * 2 1 3 28 28 H 1.09001 * 109.47200 * 181.00760 * 1 2 3 29 29 H 1.09006 * 109.46698 * 301.00501 * 1 2 3 30 30 H 1.08998 * 109.47583 * 60.99920 * 1 2 3 31 31 H 1.08997 * 110.48714 * 357.07028 * 4 2 1 32 32 H 1.09000 * 110.48945 * 119.71900 * 4 2 1 33 33 H 1.09005 * 110.90346 * 97.31858 * 5 4 2 34 34 H 1.09000 * 110.90998 * 220.91594 * 5 4 2 35 35 H 1.08999 * 109.47216 * 299.47814 * 8 6 5 36 36 H 1.09001 * 109.47500 * 59.47298 * 8 6 5 37 37 H 0.96997 * 120.00769 * 0.02562 * 11 9 8 38 38 H 1.09004 * 113.61276 * 254.52316 * 14 12 11 39 39 H 1.08994 * 113.61888 * 25.43307 * 14 12 11 40 40 H 0.96998 * 120.00200 * 25.00210 * 17 15 14 41 41 H 0.96993 * 120.00262 * 180.02562 * 21 20 18 42 42 H 1.09004 * 113.61319 * 334.56222 * 26 12 11 43 43 H 1.08995 * 113.61287 * 105.47369 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0540 -0.7465 -1.2422 5 6 2.9227 -1.8882 -0.6604 6 6 3.2418 -1.3610 0.7617 7 1 4.0714 -0.6544 0.7345 8 6 3.5550 -2.5210 1.7087 9 6 3.8737 -1.9795 3.0785 10 8 3.8518 -0.7833 3.2777 11 7 4.1818 -2.8243 4.0822 12 6 4.4910 -2.2977 5.4140 13 1 4.0576 -1.3135 5.5910 14 6 4.2268 -3.3006 6.5495 15 6 5.5245 -2.7892 7.1971 16 1 5.3748 -1.9388 7.8623 17 7 6.3356 -3.8486 7.8018 18 6 7.2028 -3.5510 8.8190 19 1 7.2889 -2.5349 9.1751 20 6 7.9717 -4.5547 9.3916 21 7 7.8671 -5.7927 8.9573 22 14 9.1551 -4.1484 10.7788 23 1 9.0847 -2.6960 11.0800 24 1 8.7830 -4.9232 11.9898 25 1 10.5379 -4.5032 10.3697 26 6 5.9809 -2.3924 5.7831 27 8 2.0218 -0.6974 1.1566 28 1 -0.3634 -1.0275 0.0181 29 1 -0.3633 0.5294 0.8809 30 1 -0.3634 0.4982 -0.8988 31 1 1.2247 -1.1546 -1.8200 32 1 2.6597 -0.0826 -1.8590 33 1 2.3590 -2.8200 -0.6125 34 1 3.8358 -2.0170 -1.2416 35 1 2.6909 -3.1824 1.7715 36 1 4.4120 -3.0781 1.3300 37 1 4.1990 -3.7810 3.9231 38 1 3.3317 -3.0771 7.1299 39 1 4.2780 -4.3423 6.2328 40 1 6.2585 -4.7610 7.4817 41 1 8.4042 -6.4942 9.3577 42 1 6.5116 -3.1859 5.2569 43 1 6.5018 -1.4357 5.7449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022652775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:23 Heat of formation + Delta-G solvation = -86.118920 kcal Electronic energy + Delta-G solvation = -21857.983609 eV Core-core repulsion = 18516.582003 eV Total energy + Delta-G solvation = -3341.401606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21469 -40.33666 -39.12972 -35.76012 -34.29731 -33.66442 -33.13502 -31.82781 -30.05295 -26.60968 -26.47034 -25.52901 -23.72629 -22.36861 -21.79233 -21.37358 -20.65851 -19.16147 -18.09995 -17.55914 -17.37538 -16.82991 -16.44650 -16.13781 -15.90744 -15.63131 -15.13498 -14.93631 -14.48247 -14.21123 -14.04314 -13.65516 -13.31428 -13.21896 -13.16396 -13.08789 -12.88771 -12.77378 -12.49615 -12.22361 -12.18103 -12.08681 -11.99732 -11.75044 -11.69486 -11.50549 -11.48440 -10.89540 -10.70942 -10.55384 -9.92811 -8.98992 -7.95949 -5.23954 1.47826 1.48012 1.58255 1.72955 2.27570 2.56934 2.90057 3.35790 3.63463 3.68336 3.74254 3.85619 3.93439 3.97318 4.04727 4.05715 4.23413 4.27933 4.31372 4.42532 4.54761 4.60044 4.63998 4.76449 4.83826 4.88434 4.90411 4.93058 4.95402 5.10269 5.14560 5.15919 5.16796 5.23381 5.31821 5.40960 5.51705 5.70867 6.12492 6.26833 6.67001 7.33333 7.36573 8.08510 8.32619 9.27335 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.051962 B = 0.002497 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.723306 B =11210.006639 C =11350.480335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 H 0.054 0.946 4 C -0.147 4.147 5 C -0.142 4.142 6 C 0.085 3.915 7 H 0.055 0.945 8 C -0.129 4.129 9 C 0.506 3.494 10 O -0.582 6.582 11 N -0.709 5.709 12 C 0.135 3.865 13 H 0.098 0.902 14 C -0.139 4.139 15 C 0.149 3.851 16 H 0.076 0.924 17 N -0.723 5.723 18 C -0.244 4.244 19 H 0.075 0.925 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.294 1.294 26 C -0.168 4.168 27 O -0.391 6.391 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.414 0.586 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.073 0.927 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.815 6.113 -23.342 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.001 4.001 3 H 0.072 0.928 4 C -0.185 4.185 5 C -0.180 4.180 6 C 0.027 3.973 7 H 0.073 0.927 8 C -0.169 4.169 9 C 0.294 3.706 10 O -0.462 6.462 11 N -0.360 5.360 12 C 0.029 3.971 13 H 0.116 0.884 14 C -0.179 4.179 15 C 0.039 3.961 16 H 0.094 0.906 17 N -0.361 5.361 18 C -0.376 4.376 19 H 0.093 0.907 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.801 3.199 23 H -0.192 1.192 24 H -0.220 1.220 25 H -0.221 1.221 26 C -0.210 4.210 27 O -0.311 6.311 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.139 0.861 36 H 0.156 0.844 37 H 0.251 0.749 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.843 7.062 -22.839 27.625 hybrid contribution 0.994 -0.478 0.767 1.343 sum -12.849 6.584 -22.073 26.375 Atomic orbital electron populations 1.21911 0.92949 1.02827 1.02617 1.22903 0.95900 0.95658 0.85630 0.92798 1.23010 1.00765 0.97580 0.97110 1.23179 1.01533 0.99360 0.93895 1.22921 0.87836 0.92807 0.93747 0.92687 1.21848 1.06058 0.98904 0.90062 1.21296 0.75144 0.86394 0.87736 1.90694 1.53423 1.17608 1.84452 1.45947 1.69934 1.10762 1.09380 1.22056 0.95324 0.98146 0.81560 0.88381 1.23662 0.98639 0.99451 0.96128 1.21658 0.91043 0.91840 0.91567 0.90626 1.42491 1.46267 1.06824 1.40478 1.19724 1.14269 0.94145 1.09471 0.90739 1.25538 1.02738 0.95487 1.02955 1.69801 1.45287 1.00558 1.46195 0.85104 0.78325 0.77679 0.78842 1.19246 1.21957 1.22079 1.24144 0.96301 1.00751 0.99810 1.88972 1.39619 1.68137 1.34413 0.91791 0.93433 0.89308 0.88714 0.89857 0.88991 0.88283 0.86148 0.84384 0.74928 0.90277 0.89180 0.79134 0.93971 0.90790 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.37 71.98 0.67 -1.46 16 2 C 0.06 1.02 4.05 30.97 0.13 1.15 16 3 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.15 -1.69 6.64 31.59 0.21 -1.48 16 5 C -0.14 -1.61 6.59 31.89 0.21 -1.40 16 6 C 0.08 1.64 2.80 31.27 0.09 1.73 16 7 H 0.06 1.27 8.03 -2.38 -0.02 1.25 16 8 C -0.13 -2.17 5.48 29.85 0.16 -2.01 16 9 C 0.51 13.54 7.74 87.66 0.68 14.22 16 10 O -0.58 -21.37 15.16 7.85 0.12 -21.25 16 11 N -0.71 -17.48 5.35 -440.03 -2.36 -19.84 16 12 C 0.14 4.08 4.24 45.52 0.19 4.28 16 13 H 0.10 3.24 7.46 -2.39 -0.02 3.22 16 14 C -0.14 -4.30 7.58 31.12 0.24 -4.07 16 15 C 0.15 5.87 4.48 45.52 0.20 6.08 16 16 H 0.08 3.00 8.10 -2.39 -0.02 2.98 16 17 N -0.72 -36.03 5.40 -320.45 -1.73 -37.76 16 18 C -0.24 -13.57 9.97 84.03 0.84 -12.73 16 19 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 20 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 21 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 22 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 26 C -0.17 -5.95 7.68 31.12 0.24 -5.71 16 27 O -0.39 -9.88 10.29 -138.09 -1.42 -11.30 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.78 7.70 -2.39 -0.02 0.76 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.82 8.06 -2.38 -0.02 0.80 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.41 7.69 8.73 -92.71 -0.81 6.88 16 38 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.09 2.67 8.09 -2.39 -0.02 2.65 16 40 H 0.38 19.78 7.92 -92.71 -0.73 19.04 16 41 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -73.57 352.04 0.70 -72.87 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.54 Total: 32.60 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 4.32 Total: -5.22 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -3.81 Total: -115.93 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.30 Total: -32.54 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -73.57 0.70 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022652775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.248 kcal (2) G-P(sol) polarization free energy of solvation -73.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds