Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.46731 * 2 1 4 4 C 1.42901 * 113.99700 * 180.02562 * 3 2 1 5 5 C 1.53789 * 113.61654 * 150.00153 * 4 3 2 6 6 C 1.53785 * 87.08017 * 89.19600 * 5 4 3 7 7 C 1.52998 * 113.61013 * 139.98392 * 6 5 4 8 8 C 1.50696 * 109.47102 * 175.00317 * 7 6 5 9 9 O 1.21286 * 119.99875 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00329 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00123 * 179.97438 * 10 8 7 12 12 C 1.53499 * 114.20527 * 205.00082 * 11 10 8 13 13 N 1.47066 * 87.98642 * 220.14732 * 12 11 10 14 14 C 1.36935 * 136.05905 * 207.08539 * 13 12 11 15 15 H 1.07996 * 120.00461 * 6.76058 * 14 13 12 16 16 C 1.38816 * 119.99877 * 186.76278 * 14 13 12 17 17 N 1.31618 * 119.99884 * 172.25761 * 16 14 13 18 18 Si 1.86798 * 120.00153 * 352.25282 * 16 14 13 19 19 H 1.48497 * 109.47359 * 175.36223 * 18 16 14 20 20 H 1.48503 * 109.47030 * 295.36478 * 18 16 14 21 21 H 1.48505 * 109.46945 * 55.36328 * 18 16 14 22 22 C 1.47070 * 87.88468 * 27.34150 * 13 12 11 23 23 C 1.53780 * 87.07970 * 25.43487 * 6 5 4 24 24 H 1.09003 * 109.47390 * 60.00101 * 1 2 3 25 25 H 1.09003 * 109.46784 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47234 * 299.99828 * 1 2 3 27 27 H 1.09005 * 109.46979 * 240.00162 * 2 1 3 28 28 H 1.08990 * 109.47496 * 120.00103 * 2 1 3 29 29 H 1.08997 * 112.85535 * 18.80228 * 4 3 2 30 30 H 1.08995 * 113.60960 * 334.64710 * 5 4 3 31 31 H 1.08995 * 113.61544 * 203.74662 * 5 4 3 32 32 H 1.08995 * 113.61725 * 270.80182 * 6 5 4 33 33 H 1.08994 * 109.47858 * 54.99741 * 7 6 5 34 34 H 1.09005 * 109.47155 * 294.99722 * 7 6 5 35 35 H 0.97001 * 119.99820 * 359.97438 * 10 8 7 36 36 H 1.08993 * 113.28511 * 338.06582 * 11 10 8 37 37 H 1.09001 * 113.46838 * 105.36625 * 12 11 10 38 38 H 1.08996 * 113.52140 * 334.93417 * 12 11 10 39 39 H 0.97004 * 120.00412 * 4.87236 * 17 16 14 40 40 H 1.09004 * 113.46535 * 87.44030 * 22 13 12 41 41 H 1.08996 * 113.46991 * 217.87726 * 22 13 12 42 42 H 1.08996 * 113.61673 * 89.11844 * 23 6 5 43 43 H 1.09006 * 113.60988 * 220.01442 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9483 2.7254 -0.7051 6 6 3.8416 3.4321 0.6566 7 6 5.0046 4.3831 0.9462 8 6 4.7464 5.1132 2.2389 9 8 3.7317 4.8948 2.8665 10 7 5.6428 6.0089 2.6977 11 6 5.3915 6.7191 3.9542 12 6 6.1071 8.0725 4.0661 13 7 6.3852 7.7504 5.4739 14 6 6.5996 8.4615 6.6243 15 1 6.4739 9.5341 6.6275 16 6 6.9785 7.8036 7.7865 17 7 7.3320 8.4955 8.8489 18 14 6.9865 5.9365 7.8426 19 1 7.5325 5.4828 9.1469 20 1 5.5994 5.4305 7.6837 21 1 7.8340 5.4119 6.7417 22 6 6.3380 6.3285 5.1012 23 6 4.0048 2.0452 1.3006 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9278 0.5458 -0.3246 30 1 3.2628 3.1183 -1.4559 31 1 4.9710 2.6342 -1.0708 32 1 2.8677 3.8870 0.8373 33 1 5.0957 5.1039 0.1337 34 1 5.9290 3.8116 1.0302 35 1 6.4545 6.1833 2.1960 36 1 4.3374 6.7468 4.2300 37 1 5.4422 8.9269 3.9395 38 1 7.0045 8.1422 3.4514 39 1 7.2605 9.4629 8.8437 40 1 7.2963 5.9375 4.7591 41 1 5.8699 5.6971 5.8563 42 1 5.0430 1.7681 1.4833 43 1 3.3649 1.8891 2.1691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030827796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -4.566372 kcal Electronic energy + Delta-G solvation = -21930.921276 eV Core-core repulsion = 18593.056054 eV Total energy + Delta-G solvation = -3337.865222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25621 -39.36206 -37.99268 -36.45361 -33.67321 -32.18529 -31.47406 -29.91747 -27.58345 -25.89435 -25.38470 -23.88823 -23.13565 -22.24634 -20.32308 -19.82813 -19.56580 -17.48867 -16.92845 -16.83092 -16.12982 -15.90997 -15.67828 -15.27669 -15.07109 -14.50735 -13.84818 -13.77959 -13.40183 -13.18484 -13.14418 -12.73911 -12.47155 -12.31233 -12.22341 -11.95288 -11.69382 -11.58118 -11.48340 -11.36553 -11.02472 -10.65782 -10.56235 -10.37640 -10.29156 -9.70228 -9.63838 -9.50072 -9.21189 -8.87899 -8.51269 -7.18721 -6.34419 -3.25952 2.82198 3.29868 3.35699 3.43308 3.47570 3.66486 4.35170 4.40773 4.58394 4.58886 4.62515 4.76245 4.77577 4.90530 4.99627 5.04739 5.06836 5.11415 5.28193 5.40845 5.42625 5.44138 5.46705 5.55464 5.59505 5.63767 5.77288 5.81284 5.91129 5.98249 6.05576 6.14943 6.26478 6.30932 6.32452 6.47626 6.99801 7.03006 7.05705 7.73632 8.21516 8.44817 8.95254 9.47238 10.31912 11.18412 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028619 B = 0.003012 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.134008 B = 9293.187329 C = 9796.424954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.366 6.366 4 C 0.063 3.937 5 C -0.138 4.138 6 C -0.084 4.084 7 C -0.134 4.134 8 C 0.510 3.490 9 O -0.539 6.539 10 N -0.719 5.719 11 C 0.100 3.900 12 C 0.116 3.884 13 N -0.623 5.623 14 C -0.306 4.306 15 H 0.085 0.915 16 C -0.023 4.023 17 N -0.931 5.931 18 Si 1.071 2.929 19 H -0.294 1.294 20 H -0.292 1.292 21 H -0.288 1.288 22 C 0.087 3.913 23 C -0.153 4.153 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.120 0.880 37 H 0.050 0.950 38 H 0.040 0.960 39 H 0.261 0.739 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 -16.089 -23.403 29.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.285 6.285 4 C 0.005 3.995 5 C -0.175 4.175 6 C -0.103 4.103 7 C -0.174 4.174 8 C 0.296 3.704 9 O -0.415 6.415 10 N -0.370 5.370 11 C -0.005 4.005 12 C -0.012 4.012 13 N -0.351 5.351 14 C -0.432 4.432 15 H 0.102 0.898 16 C -0.222 4.222 17 N -0.574 5.574 18 Si 0.904 3.096 19 H -0.222 1.222 20 H -0.220 1.220 21 H -0.215 1.215 22 C -0.040 4.040 23 C -0.190 4.190 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.232 0.768 36 H 0.138 0.862 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.951 -17.216 -21.729 28.581 hybrid contribution 0.379 1.274 -1.168 1.769 sum -6.572 -15.943 -22.898 28.665 Atomic orbital electron populations 1.21751 0.93731 1.02194 1.03288 1.22516 0.95618 0.83876 0.99933 1.87912 1.19789 1.26192 1.94586 1.22997 0.81609 0.97595 0.97314 1.23296 1.01303 0.95639 0.97302 1.22239 0.99147 0.93819 0.95083 1.21728 1.00427 0.99434 0.95784 1.20697 0.83302 0.79432 0.86960 1.90706 1.27248 1.64374 1.59213 1.46060 1.23529 1.42315 1.25062 1.23449 1.01025 0.93240 0.82809 1.22642 0.96300 0.94888 0.87327 1.45701 1.85081 1.01230 1.03101 1.20106 1.45732 0.91954 0.85391 0.89767 1.25758 0.97400 1.06967 0.92065 1.70929 1.47338 1.08218 1.30867 0.83684 0.76092 0.75063 0.74797 1.22171 1.21963 1.21466 1.23229 0.96642 0.89290 0.94797 1.23510 1.01284 0.96245 0.97999 0.91894 0.91156 0.91654 0.93513 0.93330 0.91139 0.90557 0.88982 0.87761 0.88827 0.88964 0.76795 0.86173 0.93126 0.94282 0.92870 0.93628 0.92839 0.89521 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.46 6.50 37.16 0.24 0.70 16 3 O -0.37 -3.94 10.28 -35.23 -0.36 -4.30 16 4 C 0.06 0.57 4.37 -25.91 -0.11 0.45 16 5 C -0.14 -1.10 7.47 -25.91 -0.19 -1.29 16 6 C -0.08 -0.88 3.09 -89.81 -0.28 -1.15 16 7 C -0.13 -1.26 5.54 -27.89 -0.15 -1.41 16 8 C 0.51 7.22 7.83 -10.99 -0.09 7.13 16 9 O -0.54 -10.03 15.35 5.55 0.09 -9.94 16 10 N -0.72 -9.98 5.39 -53.49 -0.29 -10.26 16 11 C 0.10 1.84 4.62 -67.67 -0.31 1.52 16 12 C 0.12 2.25 8.44 -8.50 -0.07 2.18 16 13 N -0.62 -15.60 3.70 -184.61 -0.68 -16.28 16 14 C -0.31 -8.97 11.08 -15.06 -0.17 -9.14 16 15 H 0.08 2.58 8.05 -52.49 -0.42 2.15 16 16 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 17 N -0.93 -29.77 13.70 55.49 0.76 -29.01 16 18 Si 1.07 27.62 25.13 -169.99 -4.27 23.35 16 19 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 20 H -0.29 -7.30 6.65 56.52 0.38 -6.93 16 21 H -0.29 -6.88 6.13 56.52 0.35 -6.53 16 22 C 0.09 1.90 5.53 -8.37 -0.05 1.86 16 23 C -0.15 -1.56 7.46 -25.92 -0.19 -1.76 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.10 1.37 7.67 -51.93 -0.40 0.98 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.69 7.84 -51.93 -0.41 0.28 16 35 H 0.40 4.21 8.76 -40.82 -0.36 3.85 16 36 H 0.12 2.41 7.45 -51.93 -0.39 2.03 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 40 H 0.05 0.95 7.73 -51.93 -0.40 0.55 16 41 H 0.05 1.25 4.65 -51.93 -0.24 1.01 16 42 H 0.09 0.76 7.90 -51.93 -0.41 0.35 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -35.43 347.31 -7.93 -43.36 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.32 Total: 0.25 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.09 Total: -2.39 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.21 Total: -55.56 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.28 Total: -14.25 kcal Atomic # 14 Polarization: 27.62 SS G_CDS: -4.27 Total: 23.35 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.43 -7.93 -43.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030827796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.793 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds