Wall clock time and date at job start Tue Mar 31 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.46731 * 2 1 4 4 C 1.42901 * 113.99700 * 180.02562 * 3 2 1 5 5 C 1.53789 * 113.61654 * 150.00153 * 4 3 2 6 6 C 1.53785 * 87.08017 * 89.19600 * 5 4 3 7 7 C 1.52998 * 113.61013 * 139.98392 * 6 5 4 8 8 C 1.50696 * 109.47102 * 175.00317 * 7 6 5 9 9 O 1.21286 * 119.99875 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00329 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00123 * 179.97438 * 10 8 7 12 12 C 1.53499 * 114.20527 * 205.00082 * 11 10 8 13 13 N 1.47066 * 87.98642 * 220.14732 * 12 11 10 14 14 C 1.36935 * 136.05905 * 207.08539 * 13 12 11 15 15 H 1.07996 * 120.00461 * 6.76058 * 14 13 12 16 16 C 1.38816 * 119.99877 * 186.76278 * 14 13 12 17 17 N 1.31618 * 119.99884 * 172.25761 * 16 14 13 18 18 Si 1.86798 * 120.00153 * 352.25282 * 16 14 13 19 19 H 1.48497 * 109.47359 * 175.36223 * 18 16 14 20 20 H 1.48503 * 109.47030 * 295.36478 * 18 16 14 21 21 H 1.48505 * 109.46945 * 55.36328 * 18 16 14 22 22 C 1.47070 * 87.88468 * 27.34150 * 13 12 11 23 23 C 1.53780 * 87.07970 * 25.43487 * 6 5 4 24 24 H 1.09003 * 109.47390 * 60.00101 * 1 2 3 25 25 H 1.09003 * 109.46784 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47234 * 299.99828 * 1 2 3 27 27 H 1.09005 * 109.46979 * 240.00162 * 2 1 3 28 28 H 1.08990 * 109.47496 * 120.00103 * 2 1 3 29 29 H 1.08997 * 112.85535 * 18.80228 * 4 3 2 30 30 H 1.08995 * 113.60960 * 334.64710 * 5 4 3 31 31 H 1.08995 * 113.61544 * 203.74662 * 5 4 3 32 32 H 1.08995 * 113.61725 * 270.80182 * 6 5 4 33 33 H 1.08994 * 109.47858 * 54.99741 * 7 6 5 34 34 H 1.09005 * 109.47155 * 294.99722 * 7 6 5 35 35 H 0.97001 * 119.99820 * 359.97438 * 10 8 7 36 36 H 1.08993 * 113.28511 * 338.06582 * 11 10 8 37 37 H 1.09001 * 113.46838 * 105.36625 * 12 11 10 38 38 H 1.08996 * 113.52140 * 334.93417 * 12 11 10 39 39 H 0.97004 * 120.00412 * 4.87236 * 17 16 14 40 40 H 1.09004 * 113.46535 * 87.44030 * 22 13 12 41 41 H 1.08996 * 113.46991 * 217.87726 * 22 13 12 42 42 H 1.08996 * 113.61673 * 89.11844 * 23 6 5 43 43 H 1.09006 * 113.60988 * 220.01442 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9483 2.7254 -0.7051 6 6 3.8416 3.4321 0.6566 7 6 5.0046 4.3831 0.9462 8 6 4.7464 5.1132 2.2389 9 8 3.7317 4.8948 2.8665 10 7 5.6428 6.0089 2.6977 11 6 5.3915 6.7191 3.9542 12 6 6.1071 8.0725 4.0661 13 7 6.3852 7.7504 5.4739 14 6 6.5996 8.4615 6.6243 15 1 6.4739 9.5341 6.6275 16 6 6.9785 7.8036 7.7865 17 7 7.3320 8.4955 8.8489 18 14 6.9865 5.9365 7.8426 19 1 7.5325 5.4828 9.1469 20 1 5.5994 5.4305 7.6837 21 1 7.8340 5.4119 6.7417 22 6 6.3380 6.3285 5.1012 23 6 4.0048 2.0452 1.3006 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9278 0.5458 -0.3246 30 1 3.2628 3.1183 -1.4559 31 1 4.9710 2.6342 -1.0708 32 1 2.8677 3.8870 0.8373 33 1 5.0957 5.1039 0.1337 34 1 5.9290 3.8116 1.0302 35 1 6.4545 6.1833 2.1960 36 1 4.3374 6.7468 4.2300 37 1 5.4422 8.9269 3.9395 38 1 7.0045 8.1422 3.4514 39 1 7.2605 9.4629 8.8437 40 1 7.2963 5.9375 4.7591 41 1 5.8699 5.6971 5.8563 42 1 5.0430 1.7681 1.4833 43 1 3.3649 1.8891 2.1691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030827796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:11 Heat of formation + Delta-G solvation = -31.271758 kcal Electronic energy + Delta-G solvation = -21932.079309 eV Core-core repulsion = 18593.056054 eV Total energy + Delta-G solvation = -3339.023255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.31696 -40.46077 -39.36994 -37.20958 -35.26000 -34.14904 -32.16268 -30.85911 -29.37396 -27.06799 -26.57211 -25.14128 -23.73057 -23.67005 -21.59855 -21.38210 -20.34708 -19.59573 -18.08188 -17.70379 -17.31969 -17.15641 -16.60698 -16.38255 -16.09583 -15.85420 -15.45826 -15.16799 -14.62321 -14.35168 -13.93279 -13.80591 -13.66785 -13.42116 -13.26872 -13.21924 -13.12794 -12.88103 -12.45303 -12.32803 -12.21725 -12.10250 -11.73900 -11.49602 -11.41864 -11.29692 -11.06277 -10.98016 -10.74102 -10.34816 -9.92501 -9.26351 -8.70224 -5.52834 1.35309 1.44489 1.63042 1.72191 2.17921 2.47876 2.70425 2.95227 3.20735 3.55152 3.62808 3.72334 3.88725 3.95649 4.03107 4.18837 4.19997 4.29529 4.32883 4.45452 4.49284 4.51623 4.58491 4.66103 4.70915 4.72499 4.80453 4.86497 4.93768 4.98280 5.01829 5.07931 5.13116 5.22037 5.24952 5.37180 5.53053 5.61248 5.89984 6.40672 6.64259 6.67054 7.26664 7.37526 8.19691 8.85434 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028619 B = 0.003012 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.134008 B = 9293.187329 C = 9796.424954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.396 6.396 4 C 0.058 3.942 5 C -0.120 4.120 6 C -0.093 4.093 7 C -0.120 4.120 8 C 0.506 3.494 9 O -0.590 6.590 10 N -0.704 5.704 11 C 0.126 3.874 12 C 0.121 3.879 13 N -0.659 5.659 14 C -0.291 4.291 15 H 0.056 0.944 16 C -0.083 4.083 17 N -0.967 5.967 18 Si 1.109 2.891 19 H -0.301 1.301 20 H -0.287 1.287 21 H -0.255 1.255 22 C 0.080 3.920 23 C -0.158 4.158 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.065 0.935 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.420 0.580 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.248 0.752 40 H 0.069 0.931 41 H 0.036 0.964 42 H 0.108 0.892 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 -18.198 -27.037 32.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.316 6.316 4 C 0.000 4.000 5 C -0.157 4.157 6 C -0.112 4.112 7 C -0.160 4.160 8 C 0.295 3.705 9 O -0.470 6.470 10 N -0.356 5.356 11 C 0.018 3.982 12 C -0.005 4.005 13 N -0.388 5.388 14 C -0.419 4.419 15 H 0.074 0.926 16 C -0.275 4.275 17 N -0.613 5.613 18 Si 0.936 3.064 19 H -0.229 1.229 20 H -0.215 1.215 21 H -0.180 1.180 22 C -0.046 4.046 23 C -0.196 4.196 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.258 0.742 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.126 0.874 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.553 -19.325 -25.465 32.446 hybrid contribution -0.149 1.983 -0.123 1.992 sum -5.701 -17.342 -25.588 31.433 Atomic orbital electron populations 1.21780 0.93440 1.03311 1.02394 1.22692 0.96012 0.83026 1.00811 1.87886 1.21131 1.27849 1.94692 1.23162 0.80982 0.99197 0.96659 1.23276 1.03027 0.93879 0.95522 1.22168 0.97819 0.94002 0.97219 1.21781 1.01104 0.99607 0.93459 1.21640 0.82134 0.78740 0.87992 1.90707 1.29460 1.65815 1.60991 1.45818 1.24590 1.41773 1.23450 1.22697 0.98927 0.92708 0.83856 1.22837 0.97584 0.95541 0.84522 1.45755 1.85543 1.03230 1.04242 1.19986 1.43336 0.91164 0.87371 0.92581 1.26993 0.97962 1.10552 0.91990 1.71020 1.50516 1.07484 1.32247 0.83221 0.76836 0.70872 0.75480 1.22882 1.21489 1.17959 1.23449 0.98253 0.87287 0.95573 1.23594 1.01866 0.96827 0.97292 0.92058 0.89052 0.93237 0.91635 0.93296 0.88817 0.90888 0.85595 0.91701 0.85630 0.85594 0.74226 0.88422 0.92927 0.90723 0.94265 0.91384 0.94573 0.87411 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.05 0.76 6.50 71.98 0.47 1.22 16 3 O -0.40 -8.27 10.28 -148.98 -1.53 -9.80 16 4 C 0.06 0.91 4.37 31.12 0.14 1.05 16 5 C -0.12 -1.49 7.47 31.12 0.23 -1.26 16 6 C -0.09 -1.75 3.09 -10.27 -0.03 -1.78 16 7 C -0.12 -1.76 5.54 29.85 0.17 -1.59 16 8 C 0.51 13.03 7.83 87.66 0.69 13.72 16 9 O -0.59 -21.80 15.35 -3.05 -0.05 -21.85 16 10 N -0.70 -17.00 5.39 -441.52 -2.38 -19.38 16 11 C 0.13 4.32 4.62 45.55 0.21 4.53 16 12 C 0.12 4.40 8.44 83.18 0.70 5.10 16 13 N -0.66 -32.28 3.70 -737.97 -2.73 -35.00 16 14 C -0.29 -17.30 11.08 84.03 0.93 -16.37 16 15 H 0.06 3.55 8.05 -2.91 -0.02 3.53 16 16 C -0.08 -5.08 5.50 84.86 0.47 -4.62 16 17 N -0.97 -63.68 13.70 21.65 0.30 -63.39 16 18 Si 1.11 55.84 25.13 68.60 1.72 57.56 16 19 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 20 H -0.29 -14.07 6.65 99.48 0.66 -13.41 16 21 H -0.25 -11.30 6.13 99.48 0.61 -10.69 16 22 C 0.08 3.33 5.53 83.27 0.46 3.79 16 23 C -0.16 -2.99 7.46 31.12 0.23 -2.75 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 1.02 7.87 -2.39 -0.02 1.00 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.13 0.75 8.10 -2.39 -0.02 0.73 16 32 H 0.06 1.74 7.67 -2.39 -0.02 1.72 16 33 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.13 1.10 7.84 -2.38 -0.02 1.08 16 35 H 0.42 6.68 8.76 -92.71 -0.81 5.87 16 36 H 0.10 3.88 7.45 -2.39 -0.02 3.87 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 40 H 0.07 2.55 7.73 -2.38 -0.02 2.53 16 41 H 0.04 1.64 4.65 -2.39 -0.01 1.63 16 42 H 0.11 1.52 7.90 -2.39 -0.02 1.50 16 43 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -81.63 347.31 0.73 -80.90 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.00 Total: 11.23 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 5.40 Total: -0.27 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -4.81 Total: -117.77 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.58 Total: -31.65 kcal Atomic # 14 Polarization: 55.84 SS G_CDS: 1.72 Total: 57.56 kcal Total: -81.63 0.73 -80.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030827796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.630 kcal (2) G-P(sol) polarization free energy of solvation -81.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds