Wall clock time and date at job start Tue Mar 31 2020 05:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46625 * 2 1 4 4 C 1.50696 * 109.46928 * 240.00285 * 2 1 3 5 5 O 1.21286 * 119.99875 * 239.99962 * 4 2 1 6 6 N 1.34775 * 120.00329 * 60.00185 * 4 2 1 7 7 C 1.46499 * 120.00123 * 179.97438 * 6 4 2 8 8 C 1.53499 * 114.20527 * 205.00082 * 7 6 4 9 9 N 1.47066 * 87.98642 * 220.14732 * 8 7 6 10 10 C 1.36935 * 136.05905 * 207.08539 * 9 8 7 11 11 H 1.07996 * 120.00461 * 6.76058 * 10 9 8 12 12 C 1.38816 * 119.99877 * 186.76278 * 10 9 8 13 13 N 1.31618 * 119.99884 * 172.25761 * 12 10 9 14 14 Si 1.86798 * 120.00153 * 352.25282 * 12 10 9 15 15 H 1.48497 * 109.47359 * 175.36223 * 14 12 10 16 16 H 1.48503 * 109.47030 * 295.36478 * 14 12 10 17 17 H 1.48505 * 109.46945 * 55.36328 * 14 12 10 18 18 C 1.47070 * 87.88468 * 27.34150 * 9 8 7 19 19 C 1.52998 * 109.46985 * 120.00513 * 2 1 3 20 20 C 1.53181 * 109.54225 * 299.82095 * 19 2 1 21 21 C 1.53104 * 109.15857 * 183.24254 * 20 19 2 22 22 O 1.42898 * 109.48744 * 57.47394 * 21 20 19 23 23 C 1.42910 * 114.09904 * 298.89265 * 22 21 20 24 24 C 1.53089 * 109.41381 * 61.15520 * 23 22 21 25 25 H 1.09000 * 109.47559 * 299.99667 * 1 2 3 26 26 H 1.09008 * 109.47388 * 60.00075 * 1 2 3 27 27 H 1.09004 * 109.47182 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99820 * 359.97438 * 6 4 2 29 29 H 1.08993 * 113.28511 * 338.06582 * 7 6 4 30 30 H 1.09001 * 113.46838 * 105.36625 * 8 7 6 31 31 H 1.09000 * 113.46983 * 334.92687 * 8 7 6 32 32 H 0.97004 * 120.00412 * 4.87236 * 13 12 10 33 33 H 1.09004 * 113.46535 * 87.44030 * 18 9 8 34 34 H 1.08996 * 113.46991 * 217.87726 * 18 9 8 35 35 H 1.09003 * 109.54626 * 59.99562 * 19 2 1 36 36 H 1.09000 * 109.52459 * 303.06058 * 20 19 2 37 37 H 1.09006 * 109.51959 * 63.25088 * 20 19 2 38 38 H 1.09008 * 109.40202 * 297.49390 * 21 20 19 39 39 H 1.09001 * 109.48224 * 177.50631 * 21 20 19 40 40 H 1.09003 * 109.47500 * 301.17508 * 23 22 21 41 41 H 1.08999 * 109.48116 * 181.13819 * 23 22 21 42 42 H 1.09004 * 109.52256 * 182.49083 * 24 23 22 43 43 H 1.09001 * 109.52573 * 62.29809 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2498 -2.4546 7 6 2.1955 -0.9401 -3.6507 8 6 2.2901 -0.0491 -4.8970 9 7 1.7768 -1.1817 -5.6822 10 6 1.8794 -1.6096 -6.9789 11 1 2.5484 -1.1074 -7.6620 12 6 1.1234 -2.6888 -7.4156 13 7 1.1047 -3.0053 -8.6930 14 14 0.1327 -3.6920 -6.1902 15 1 -0.6688 -4.7094 -6.9165 16 1 1.0556 -4.3709 -5.2454 17 1 -0.7761 -2.7930 -5.4344 18 6 1.0996 -1.6492 -4.4633 19 6 2.0400 -0.7214 1.2492 20 6 1.5339 0.0020 2.5010 21 6 2.1149 -0.6781 3.7436 22 8 3.5419 -0.6685 3.6691 23 6 4.0722 -1.3720 2.5439 24 6 3.5717 -0.7184 1.2532 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.1488 0.5386 -2.5435 29 1 3.0824 -1.5461 -3.4663 30 1 3.3119 0.2301 -5.1546 31 1 1.6128 0.8046 -4.8728 32 1 1.6732 -2.5299 -9.3189 33 1 0.1084 -1.2174 -4.3247 34 1 1.1070 -2.7334 -4.3512 35 1 1.6772 -1.7493 1.2503 36 1 1.8539 1.0436 2.4743 37 1 0.4454 -0.0450 2.5338 38 1 1.7603 -1.7078 3.7920 39 1 1.7937 -0.1406 4.6359 40 1 3.7432 -2.4107 2.5767 41 1 5.1612 -1.3343 2.5719 42 1 3.9392 -1.2801 0.3942 43 1 3.9341 0.3082 1.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031497942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:42 Heat of formation + Delta-G solvation = -33.686339 kcal Electronic energy + Delta-G solvation = -22842.753780 eV Core-core repulsion = 19503.625821 eV Total energy + Delta-G solvation = -3339.127959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.52036 -39.25396 -38.09967 -35.37039 -33.87560 -32.26612 -31.31584 -30.96416 -27.75384 -25.83798 -25.42612 -24.17370 -23.34596 -22.05501 -20.44565 -20.11706 -19.58425 -17.53060 -17.09322 -16.55096 -16.14513 -16.06627 -15.44086 -15.33095 -14.74236 -14.50689 -14.19703 -13.85037 -13.67028 -13.40486 -13.18087 -12.57119 -12.51973 -12.11489 -12.04460 -11.94294 -11.79949 -11.62414 -11.51995 -11.36778 -11.03538 -10.80389 -10.56680 -10.42002 -10.40313 -9.78113 -9.66062 -9.35329 -9.24119 -8.90990 -8.56475 -7.22154 -6.37313 -3.29122 2.70119 3.25213 3.40335 3.44216 3.63678 3.69953 4.33482 4.44582 4.54645 4.55991 4.72519 4.80944 4.86269 4.97868 5.05966 5.08449 5.10617 5.18861 5.30693 5.37025 5.39137 5.49327 5.58926 5.60004 5.66662 5.69915 5.73040 5.82491 5.86453 5.96329 6.10746 6.15788 6.19682 6.22320 6.27918 6.44588 6.93806 7.01755 7.02041 7.64988 8.18706 8.34930 8.92273 9.44136 10.28430 11.15518 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033961 B = 0.003500 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.273072 B = 7998.108807 C = 8043.423335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 H 0.096 0.904 4 C 0.516 3.484 5 O -0.538 6.538 6 N -0.714 5.714 7 C 0.100 3.900 8 C 0.116 3.884 9 N -0.622 5.622 10 C -0.307 4.307 11 H 0.085 0.915 12 C -0.022 4.022 13 N -0.931 5.931 14 Si 1.071 2.929 15 H -0.294 1.294 16 H -0.292 1.292 17 H -0.288 1.288 18 C 0.088 3.912 19 C -0.068 4.068 20 C -0.153 4.153 21 C 0.061 3.939 22 O -0.388 6.388 23 C 0.062 3.938 24 C -0.161 4.161 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.398 0.602 29 H 0.121 0.879 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.261 0.739 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 8.569 24.467 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 H 0.114 0.886 4 C 0.302 3.698 5 O -0.415 6.415 6 N -0.365 5.365 7 C -0.006 4.006 8 C -0.012 4.012 9 N -0.350 5.350 10 C -0.433 4.433 11 H 0.103 0.897 12 C -0.221 4.221 13 N -0.573 5.573 14 Si 0.904 3.096 15 H -0.221 1.221 16 H -0.220 1.220 17 H -0.215 1.215 18 C -0.039 4.039 19 C -0.087 4.087 20 C -0.190 4.190 21 C -0.015 4.015 22 O -0.307 6.307 23 C -0.014 4.014 24 C -0.199 4.199 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.232 0.768 29 H 0.139 0.861 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.754 6.600 24.500 25.385 hybrid contribution 0.532 1.674 -0.574 1.848 sum -0.222 8.274 23.926 25.317 Atomic orbital electron populations 1.21840 0.92880 1.03030 1.02704 1.21370 0.97490 1.00760 0.93129 0.88594 1.20603 0.79956 0.84592 0.84627 1.90628 1.37995 1.26354 1.86544 1.46052 1.53009 1.31688 1.05721 1.23483 0.99017 0.96164 0.81890 1.22641 0.98282 0.91904 0.88331 1.45693 1.58000 1.24790 1.06525 1.20109 1.25131 1.14863 0.83195 0.89749 1.25755 0.99546 0.97472 0.99337 1.70927 1.39372 1.46187 1.00820 0.83685 0.76139 0.76122 0.73702 1.22129 1.21987 1.21471 1.23224 0.95429 0.98848 0.86420 1.20966 0.95839 0.99738 0.92122 1.22326 1.01033 1.00642 0.95019 1.22540 0.81329 0.99862 0.97812 1.87905 1.20247 1.75994 1.46535 1.22597 0.98771 0.94862 0.85209 1.22480 0.95318 1.02248 0.99835 0.91266 0.91903 0.91882 0.76752 0.86114 0.93089 0.94302 0.92832 0.93629 0.92818 0.90333 0.91018 0.90580 0.93306 0.89105 0.93179 0.89043 0.87875 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.74 37.16 0.32 -0.82 16 2 C -0.11 -0.99 2.32 -91.77 -0.21 -1.21 16 3 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.52 6.90 6.87 -10.99 -0.08 6.82 16 5 O -0.54 -9.12 13.28 5.55 0.07 -9.05 16 6 N -0.71 -9.53 5.28 -53.49 -0.28 -9.81 16 7 C 0.10 1.76 4.62 -67.67 -0.31 1.45 16 8 C 0.12 2.19 8.44 -8.50 -0.07 2.12 16 9 N -0.62 -15.28 3.70 -184.60 -0.68 -15.96 16 10 C -0.31 -8.89 11.08 -15.06 -0.17 -9.06 16 11 H 0.08 2.55 8.05 -52.49 -0.42 2.13 16 12 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 13 N -0.93 -29.52 13.70 55.49 0.76 -28.76 16 14 Si 1.07 27.25 25.13 -169.99 -4.27 22.98 16 15 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 16 H -0.29 -7.19 6.65 56.52 0.38 -6.81 16 17 H -0.29 -6.79 6.13 56.52 0.35 -6.44 16 18 C 0.09 1.86 5.53 -8.37 -0.05 1.82 16 19 C -0.07 -0.66 1.49 -90.44 -0.13 -0.79 16 20 C -0.15 -1.16 4.98 -26.58 -0.13 -1.29 16 21 C 0.06 0.50 6.84 37.21 0.25 0.76 16 22 O -0.39 -4.17 10.77 -35.23 -0.38 -4.55 16 23 C 0.06 0.63 6.84 37.20 0.25 0.88 16 24 C -0.16 -1.73 5.05 -26.59 -0.13 -1.86 16 25 H 0.07 0.41 6.51 -51.93 -0.34 0.08 16 26 H 0.06 0.45 7.56 -51.92 -0.39 0.06 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.40 4.16 8.17 -40.82 -0.33 3.83 16 29 H 0.12 2.32 7.45 -51.93 -0.39 1.93 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 33 H 0.05 0.93 7.73 -51.93 -0.40 0.53 16 34 H 0.05 1.23 4.65 -51.93 -0.24 0.99 16 35 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.47 6.63 -51.93 -0.34 0.12 16 38 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.35 5.62 -51.93 -0.29 1.06 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -33.96 330.69 -7.38 -41.34 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.03 Total: 0.76 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.55 Total: -1.93 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.20 Total: -54.53 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.31 Total: -13.60 kcal Atomic # 14 Polarization: 27.25 SS G_CDS: -4.27 Total: 22.98 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.96 -7.38 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031497942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.654 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds