Wall clock time and date at job start Tue Mar 31 2020 05:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46625 * 2 1 4 4 C 1.50696 * 109.46928 * 240.00285 * 2 1 3 5 5 O 1.21286 * 119.99875 * 239.99962 * 4 2 1 6 6 N 1.34775 * 120.00329 * 60.00185 * 4 2 1 7 7 C 1.46499 * 120.00123 * 179.97438 * 6 4 2 8 8 C 1.53499 * 114.20527 * 205.00082 * 7 6 4 9 9 N 1.47066 * 87.98642 * 220.14732 * 8 7 6 10 10 C 1.36935 * 136.05905 * 207.08539 * 9 8 7 11 11 H 1.07996 * 120.00461 * 6.76058 * 10 9 8 12 12 C 1.38816 * 119.99877 * 186.76278 * 10 9 8 13 13 N 1.31618 * 119.99884 * 172.25761 * 12 10 9 14 14 Si 1.86798 * 120.00153 * 352.25282 * 12 10 9 15 15 H 1.48497 * 109.47359 * 175.36223 * 14 12 10 16 16 H 1.48503 * 109.47030 * 295.36478 * 14 12 10 17 17 H 1.48505 * 109.46945 * 55.36328 * 14 12 10 18 18 C 1.47070 * 87.88468 * 27.34150 * 9 8 7 19 19 C 1.52998 * 109.46985 * 120.00513 * 2 1 3 20 20 C 1.53181 * 109.54225 * 299.82095 * 19 2 1 21 21 C 1.53104 * 109.15857 * 183.24254 * 20 19 2 22 22 O 1.42898 * 109.48744 * 57.47394 * 21 20 19 23 23 C 1.42910 * 114.09904 * 298.89265 * 22 21 20 24 24 C 1.53089 * 109.41381 * 61.15520 * 23 22 21 25 25 H 1.09000 * 109.47559 * 299.99667 * 1 2 3 26 26 H 1.09008 * 109.47388 * 60.00075 * 1 2 3 27 27 H 1.09004 * 109.47182 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99820 * 359.97438 * 6 4 2 29 29 H 1.08993 * 113.28511 * 338.06582 * 7 6 4 30 30 H 1.09001 * 113.46838 * 105.36625 * 8 7 6 31 31 H 1.09000 * 113.46983 * 334.92687 * 8 7 6 32 32 H 0.97004 * 120.00412 * 4.87236 * 13 12 10 33 33 H 1.09004 * 113.46535 * 87.44030 * 18 9 8 34 34 H 1.08996 * 113.46991 * 217.87726 * 18 9 8 35 35 H 1.09003 * 109.54626 * 59.99562 * 19 2 1 36 36 H 1.09000 * 109.52459 * 303.06058 * 20 19 2 37 37 H 1.09006 * 109.51959 * 63.25088 * 20 19 2 38 38 H 1.09008 * 109.40202 * 297.49390 * 21 20 19 39 39 H 1.09001 * 109.48224 * 177.50631 * 21 20 19 40 40 H 1.09003 * 109.47500 * 301.17508 * 23 22 21 41 41 H 1.08999 * 109.48116 * 181.13819 * 23 22 21 42 42 H 1.09004 * 109.52256 * 182.49083 * 24 23 22 43 43 H 1.09001 * 109.52573 * 62.29809 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2498 -2.4546 7 6 2.1955 -0.9401 -3.6507 8 6 2.2901 -0.0491 -4.8970 9 7 1.7768 -1.1817 -5.6822 10 6 1.8794 -1.6096 -6.9789 11 1 2.5484 -1.1074 -7.6620 12 6 1.1234 -2.6888 -7.4156 13 7 1.1047 -3.0053 -8.6930 14 14 0.1327 -3.6920 -6.1902 15 1 -0.6688 -4.7094 -6.9165 16 1 1.0556 -4.3709 -5.2454 17 1 -0.7761 -2.7930 -5.4344 18 6 1.0996 -1.6492 -4.4633 19 6 2.0400 -0.7214 1.2492 20 6 1.5339 0.0020 2.5010 21 6 2.1149 -0.6781 3.7436 22 8 3.5419 -0.6685 3.6691 23 6 4.0722 -1.3720 2.5439 24 6 3.5717 -0.7184 1.2532 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.1488 0.5386 -2.5435 29 1 3.0824 -1.5461 -3.4663 30 1 3.3119 0.2301 -5.1546 31 1 1.6128 0.8046 -4.8728 32 1 1.6732 -2.5299 -9.3189 33 1 0.1084 -1.2174 -4.3247 34 1 1.1070 -2.7334 -4.3512 35 1 1.6772 -1.7493 1.2503 36 1 1.8539 1.0436 2.4743 37 1 0.4454 -0.0450 2.5338 38 1 1.7603 -1.7078 3.7920 39 1 1.7937 -0.1406 4.6359 40 1 3.7432 -2.4107 2.5767 41 1 5.1612 -1.3343 2.5719 42 1 3.9392 -1.2801 0.3942 43 1 3.9341 0.3082 1.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031497942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:42 Heat of formation + Delta-G solvation = -59.203579 kcal Electronic energy + Delta-G solvation = -22843.860290 eV Core-core repulsion = 19503.625821 eV Total energy + Delta-G solvation = -3340.234469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55746 -40.38947 -39.37202 -36.20648 -35.34374 -34.20758 -32.10764 -31.73800 -29.59047 -27.07595 -26.55455 -25.29167 -24.32031 -23.37297 -21.60975 -21.33521 -20.69409 -19.59439 -18.14967 -17.66081 -17.18238 -17.01114 -16.84136 -16.38552 -15.90435 -15.69882 -15.37006 -15.16810 -14.88450 -14.48833 -14.29391 -13.79656 -13.63138 -13.47620 -13.26289 -13.21673 -13.00191 -12.62815 -12.45658 -12.41483 -12.23903 -12.14421 -11.76541 -11.55271 -11.49249 -11.29332 -11.13121 -11.05789 -10.61634 -10.32819 -9.91716 -9.26690 -8.70453 -5.53157 1.35228 1.44143 1.61867 1.66476 2.12009 2.47931 2.94350 3.00962 3.20234 3.53643 3.58832 3.71753 3.82508 4.06289 4.13744 4.17712 4.27259 4.30906 4.38265 4.44849 4.46944 4.52062 4.58100 4.66547 4.71382 4.76167 4.82703 4.91906 4.99364 4.99927 5.03275 5.07103 5.12809 5.16094 5.31485 5.41813 5.47337 5.60044 5.89918 6.30321 6.60640 6.64729 7.26469 7.31437 8.19320 8.85317 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033961 B = 0.003500 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.273072 B = 7998.108807 C = 8043.423335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.121 0.879 4 C 0.512 3.488 5 O -0.576 6.576 6 N -0.702 5.702 7 C 0.128 3.872 8 C 0.120 3.880 9 N -0.657 5.657 10 C -0.292 4.292 11 H 0.056 0.944 12 C -0.082 4.082 13 N -0.968 5.968 14 Si 1.109 2.891 15 H -0.302 1.302 16 H -0.285 1.285 17 H -0.256 1.256 18 C 0.080 3.920 19 C -0.068 4.068 20 C -0.143 4.143 21 C 0.052 3.948 22 O -0.404 6.404 23 C 0.063 3.937 24 C -0.159 4.159 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.417 0.583 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.248 0.752 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.110 0.890 40 H 0.045 0.955 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 10.571 27.590 29.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.138 0.862 4 C 0.301 3.699 5 O -0.456 6.456 6 N -0.354 5.354 7 C 0.021 3.979 8 C -0.006 4.006 9 N -0.386 5.386 10 C -0.419 4.419 11 H 0.074 0.926 12 C -0.274 4.274 13 N -0.614 5.614 14 Si 0.936 3.064 15 H -0.230 1.230 16 H -0.213 1.213 17 H -0.181 1.181 18 C -0.046 4.046 19 C -0.087 4.087 20 C -0.181 4.181 21 C -0.024 4.024 22 O -0.323 6.323 23 C -0.014 4.014 24 C -0.196 4.196 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.255 0.745 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.277 8.680 27.685 29.103 hybrid contribution 1.113 1.127 -1.474 2.164 sum -1.164 9.807 26.211 28.010 Atomic orbital electron populations 1.21880 0.91059 1.02798 1.04555 1.21387 0.98760 1.01115 0.90349 0.86161 1.21410 0.78952 0.84108 0.85440 1.90637 1.39607 1.28277 1.87071 1.45814 1.53199 1.31973 1.04417 1.22722 0.96962 0.95155 0.83095 1.22837 0.98862 0.91527 0.87355 1.45736 1.59341 1.27598 1.05941 1.19991 1.23152 1.13792 0.84994 0.92590 1.26985 1.01349 0.99029 1.00017 1.71019 1.41039 1.47401 1.01893 0.83225 0.75645 0.75324 0.72237 1.22954 1.21273 1.18075 1.23443 0.97175 0.98405 0.85545 1.20966 0.94926 0.99279 0.93559 1.22281 1.02199 1.00436 0.93170 1.22778 0.80081 1.00453 0.99086 1.87884 1.21894 1.76021 1.46519 1.22573 0.99171 0.94580 0.85078 1.22392 0.96401 1.01914 0.98907 0.88751 0.90813 0.93155 0.74532 0.87958 0.92834 0.90988 0.94245 0.91605 0.94435 0.92135 0.90239 0.88422 0.93275 0.87161 0.93629 0.88594 0.90579 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.74 71.98 0.63 -0.99 16 2 C -0.10 -1.45 2.32 -11.54 -0.03 -1.48 16 3 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 4 C 0.51 12.48 6.87 87.66 0.60 13.08 16 5 O -0.58 -19.13 13.28 -3.05 -0.04 -19.17 16 6 N -0.70 -16.45 5.28 -441.52 -2.33 -18.79 16 7 C 0.13 4.23 4.62 45.55 0.21 4.44 16 8 C 0.12 4.26 8.44 83.18 0.70 4.97 16 9 N -0.66 -31.59 3.70 -737.96 -2.73 -34.32 16 10 C -0.29 -17.13 11.08 84.03 0.93 -16.20 16 11 H 0.06 3.51 8.05 -2.91 -0.02 3.49 16 12 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 13 N -0.97 -63.29 13.70 21.65 0.30 -62.99 16 14 Si 1.11 55.08 25.13 68.60 1.72 56.80 16 15 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 16 H -0.29 -13.67 6.65 99.48 0.66 -13.01 16 17 H -0.26 -11.21 6.13 99.48 0.61 -10.60 16 18 C 0.08 3.24 5.53 83.27 0.46 3.70 16 19 C -0.07 -1.16 1.49 -10.68 -0.02 -1.18 16 20 C -0.14 -1.66 4.98 30.69 0.15 -1.51 16 21 C 0.05 0.72 6.84 72.02 0.49 1.21 16 22 O -0.40 -8.00 10.77 -148.98 -1.60 -9.61 16 23 C 0.06 1.22 6.84 72.01 0.49 1.71 16 24 C -0.16 -3.22 5.05 30.68 0.16 -3.07 16 25 H 0.09 0.62 6.51 -2.39 -0.02 0.60 16 26 H 0.07 0.69 7.56 -2.38 -0.02 0.67 16 27 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.42 6.80 8.17 -92.71 -0.76 6.05 16 29 H 0.10 3.85 7.45 -2.39 -0.02 3.83 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.16 8.13 -2.39 -0.02 2.14 16 32 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16 33 H 0.07 2.42 7.73 -2.38 -0.02 2.41 16 34 H 0.04 1.65 4.65 -2.39 -0.01 1.64 16 35 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.74 6.63 -2.38 -0.02 0.72 16 38 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 1.99 5.62 -2.38 -0.01 1.98 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -76.23 330.69 0.63 -75.59 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.06 Total: 12.28 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 5.25 Total: 0.20 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -4.76 Total: -116.10 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.64 Total: -28.77 kcal Atomic # 14 Polarization: 55.08 SS G_CDS: 1.72 Total: 56.80 kcal Total: -76.23 0.63 -75.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031497942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.391 kcal (2) G-P(sol) polarization free energy of solvation -76.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds